Wall clock time and date at job start Tue Mar 31 2020 18:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46758 * 2 1 4 4 C 1.52997 * 109.47131 * 239.99730 * 2 1 3 5 5 N 1.46900 * 109.46915 * 185.00277 * 4 2 1 6 6 C 1.46896 * 110.99796 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47028 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00065 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00158 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00023 * 180.02562 * 9 7 6 11 11 H 1.07991 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.38955 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99671 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00124 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46725 * 60.00173 * 14 12 10 16 16 H 1.48497 * 109.47073 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46915 * 300.00172 * 14 12 10 18 18 N 1.46494 * 109.46666 * 119.99430 * 2 1 3 19 19 C 1.34768 * 120.00548 * 274.99909 * 18 2 1 20 20 O 1.21281 * 120.00116 * 0.02562 * 19 18 2 21 21 C 1.50707 * 120.00316 * 180.02562 * 19 18 2 22 22 C 1.53004 * 109.47251 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47253 * 179.97438 * 22 21 19 24 24 C 1.38597 * 120.79551 * 89.99434 * 23 22 21 25 25 N 1.32337 * 119.09979 * 179.72102 * 24 23 22 26 26 C 1.31795 * 120.82153 * 0.28399 * 25 24 23 27 27 N 1.31796 * 121.75342 * 0.02562 * 26 25 24 28 28 C 1.32339 * 120.81472 * 359.96878 * 27 26 25 29 29 H 1.08998 * 109.47227 * 300.00560 * 1 2 3 30 30 H 1.09003 * 109.46682 * 60.00221 * 1 2 3 31 31 H 1.09001 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47043 * 304.99997 * 4 2 1 33 33 H 1.08999 * 109.46866 * 65.00100 * 4 2 1 34 34 H 1.00903 * 110.99699 * 303.95060 * 5 4 2 35 35 H 1.08997 * 109.47458 * 299.99698 * 6 5 4 36 36 H 1.08997 * 109.47278 * 60.00174 * 6 5 4 37 37 H 0.97002 * 120.00458 * 359.97438 * 9 7 6 38 38 H 0.97006 * 120.00101 * 180.02562 * 13 12 10 39 39 H 0.97008 * 119.99978 * 95.00347 * 18 2 1 40 40 H 1.08994 * 109.46796 * 60.00187 * 21 19 18 41 41 H 1.08998 * 109.47011 * 300.00199 * 21 19 18 42 42 H 1.09001 * 109.47020 * 59.99947 * 22 21 19 43 43 H 1.08997 * 109.46897 * 300.00424 * 22 21 19 44 44 H 1.08002 * 120.45366 * 0.02562 * 24 23 22 45 45 H 1.07992 * 119.12500 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.44447 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0304 -1.5149 -2.3765 7 6 5.5318 -1.6035 -2.2810 8 8 6.1068 -1.1385 -1.3195 9 7 6.2357 -2.1983 -3.2644 10 6 7.6015 -2.2793 -3.1772 11 1 8.1134 -1.8661 -2.3208 12 6 8.3272 -2.8931 -4.1909 13 7 7.7042 -3.3964 -5.2328 14 14 10.1882 -3.0028 -4.0725 15 1 10.5626 -3.7625 -2.8527 16 1 10.7203 -3.6991 -5.2714 17 1 10.7610 -1.6348 -3.9990 18 7 2.0183 -0.6905 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8582 1.1585 2.4117 21 6 2.6498 -0.7284 3.5876 22 6 2.7005 0.2546 4.7589 23 6 3.2027 -0.4558 5.9895 24 6 4.5574 -0.5024 6.2787 25 7 4.9609 -1.1306 7.3713 26 6 4.0934 -1.7114 8.1757 27 7 2.7987 -1.6926 7.9294 28 6 2.3217 -1.0834 6.8558 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 -1.2950 33 1 1.7517 -0.1584 -2.1369 34 1 3.9280 0.0825 -1.0823 35 1 3.6097 -2.5190 -2.4307 36 1 3.7560 -0.9571 -3.2718 37 1 5.7760 -2.5698 -4.0335 38 1 8.2108 -3.8252 -5.9403 39 1 2.2490 -1.6317 1.1527 40 1 3.6491 -1.1202 3.3980 41 1 1.9776 -1.5507 3.8326 42 1 1.7010 0.6461 4.9483 43 1 3.3725 1.0771 4.5141 44 1 5.2735 -0.0282 5.6240 45 1 4.4529 -2.2168 9.0597 46 1 1.2596 -1.0721 6.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569006845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:37 Heat of formation + Delta-G solvation = -36.940332 kcal Electronic energy + Delta-G solvation = -27398.248300 eV Core-core repulsion = 23322.485464 eV Total energy + Delta-G solvation = -4075.762836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34361 -39.91902 -38.35815 -36.83178 -35.03025 -34.31451 -33.99948 -33.68839 -31.58171 -31.23090 -30.10779 -27.64608 -25.88372 -25.02633 -24.90768 -23.34972 -22.61971 -21.19760 -20.36936 -19.27927 -17.95024 -17.93943 -17.92135 -17.35302 -16.74269 -15.91602 -15.60099 -15.28067 -14.96946 -14.77015 -14.58936 -14.54017 -14.05471 -13.97509 -13.88573 -13.76261 -13.63426 -13.38011 -13.15898 -12.63153 -12.57094 -12.44801 -12.05049 -11.83251 -11.58560 -11.52494 -11.45854 -11.15613 -11.13015 -11.04904 -10.98714 -10.47094 -10.24958 -10.02401 -9.62569 -9.53705 -9.52495 -9.09265 -8.53353 -8.16011 -8.00322 -6.45425 -3.86438 0.54061 0.75006 2.60354 3.09558 3.17582 3.23630 3.27920 3.46766 3.83754 3.86076 3.91152 4.01110 4.23895 4.26917 4.35366 4.47174 4.66493 4.72843 4.91255 4.94944 5.03387 5.07019 5.15656 5.19700 5.24587 5.31185 5.39811 5.40728 5.51708 5.54826 5.72783 5.75346 5.76999 5.85580 5.90313 5.99866 6.07036 6.20561 6.46077 6.62284 7.08611 7.50058 7.51440 7.53868 7.74690 8.01972 8.20124 8.56886 9.13923 9.49939 10.01146 10.72106 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.002229 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.798751 B =12556.101349 C =15111.119505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.550 6.550 21 C -0.138 4.138 22 C -0.055 4.055 23 C -0.185 4.185 24 C 0.153 3.847 25 N -0.517 5.517 26 C 0.285 3.715 27 N -0.520 5.520 28 C 0.149 3.851 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.351 0.649 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.406 0.594 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.195 0.805 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 3.288 15.748 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.358 5.358 19 C 0.303 3.697 20 O -0.428 6.428 21 C -0.178 4.178 22 C -0.094 4.094 23 C -0.189 4.189 24 C -0.013 4.013 25 N -0.230 5.230 26 C -0.003 4.003 27 N -0.234 5.234 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.170 0.830 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.241 0.759 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.187 0.813 45 H 0.211 0.789 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.382 3.294 17.455 23.498 hybrid contribution 0.389 0.162 -2.100 2.142 sum -14.994 3.456 15.355 21.738 Atomic orbital electron populations 1.22136 0.95023 1.02189 1.02600 1.20935 0.93545 0.97494 0.84084 0.89592 1.22317 0.89560 1.00693 0.95722 1.60078 1.03017 1.26877 1.39942 1.21677 0.95339 0.99843 0.91366 1.19793 0.87991 0.84689 0.85062 1.90529 1.71109 1.51892 1.33228 1.41860 1.07411 1.50902 1.19759 1.19648 0.81499 1.35328 1.06523 0.87982 1.25269 1.00737 0.96702 0.95202 1.69603 1.36835 1.38477 1.09368 0.85914 0.82063 0.78624 0.77617 1.19856 1.20956 1.19887 1.45848 1.66498 1.14481 1.08937 1.20490 0.77259 0.87220 0.84686 1.90692 1.50782 1.16031 1.85339 1.21660 1.04005 0.99382 0.92721 1.20200 1.03357 0.96877 0.88998 1.21750 0.96063 1.01406 0.99661 1.23298 0.93954 0.91649 0.92414 1.68465 1.40313 1.09390 1.04825 1.24990 0.84853 0.92877 0.97587 1.68440 1.17062 1.18175 1.19673 1.23189 1.00800 0.89462 0.88278 0.91911 0.91643 0.92343 0.90475 0.93911 0.82983 0.89611 0.93838 0.77470 0.91789 0.75901 0.88224 0.88925 0.89574 0.89297 0.81268 0.78860 0.81590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.46 2.81 -67.93 -0.19 1.27 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 4 C 0.05 0.49 5.24 -3.83 -0.02 0.47 16 5 N -0.67 -9.62 5.85 -115.07 -0.67 -10.30 16 6 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 7 C 0.44 9.99 7.82 -10.99 -0.09 9.91 16 8 O -0.58 -15.37 15.78 5.54 0.09 -15.29 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 14 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 N -0.71 -7.05 4.80 -53.81 -0.26 -7.31 16 19 C 0.52 5.58 7.79 -10.99 -0.09 5.50 16 20 O -0.55 -7.75 15.65 5.56 0.09 -7.66 16 21 C -0.14 -1.07 5.68 -27.88 -0.16 -1.23 16 22 C -0.06 -0.42 4.68 -27.88 -0.13 -0.55 16 23 C -0.18 -1.45 5.17 -104.36 -0.54 -1.99 16 24 C 0.15 1.36 11.01 -17.20 -0.19 1.17 16 25 N -0.52 -5.28 10.44 -14.58 -0.15 -5.43 16 26 C 0.28 2.58 12.29 -92.15 -1.13 1.45 16 27 N -0.52 -4.93 10.44 -14.58 -0.15 -5.08 16 28 C 0.15 1.17 11.01 -17.20 -0.19 0.98 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.41 3.66 8.60 -40.82 -0.35 3.31 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 43 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -34.14 398.05 -8.88 -43.02 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -6.82 Total: 14.79 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.64 Total: 8.89 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.57 Total: -65.56 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.14 -8.88 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569006845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.077 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds