Wall clock time and date at job start Tue Mar 31 2020 20:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47230 * 2 1 4 4 C 1.36933 * 120.00227 * 264.91525 * 3 2 1 5 5 H 1.07999 * 119.99801 * 188.69403 * 4 3 2 6 6 C 1.38802 * 119.99980 * 8.69311 * 4 3 2 7 7 N 1.31617 * 120.00259 * 29.85744 * 6 4 3 8 8 Si 1.86804 * 120.00240 * 209.85429 * 6 4 3 9 9 H 1.48496 * 109.46993 * 94.99639 * 8 6 4 10 10 H 1.48500 * 109.47243 * 214.99759 * 8 6 4 11 11 H 1.48501 * 109.47017 * 334.99994 * 8 6 4 12 12 C 1.46504 * 119.99473 * 84.91121 * 3 2 1 13 13 C 1.53001 * 109.47319 * 269.99910 * 12 3 2 14 14 C 1.53038 * 109.46112 * 175.00352 * 13 12 3 15 15 C 1.53195 * 109.31441 * 181.39125 * 14 13 12 16 16 N 1.46932 * 108.77069 * 305.36556 * 15 14 13 17 17 C 1.34782 * 120.62721 * 233.58427 * 16 15 14 18 18 O 1.21566 * 119.99637 * 184.31640 * 17 16 15 19 19 C 1.47723 * 119.99891 * 4.31999 * 17 16 15 20 20 C 1.40157 * 120.53262 * 314.33683 * 19 17 16 21 21 C 1.38148 * 118.32442 * 179.75733 * 20 19 17 22 22 C 1.38760 * 119.28428 * 0.52861 * 21 20 19 23 23 F 1.35099 * 119.49097 * 179.73213 * 22 21 20 24 24 N 1.32139 * 121.01291 * 359.45484 * 22 21 20 25 25 C 1.31698 * 121.84361 * 0.27721 * 24 22 21 26 26 C 1.46917 * 118.74050 * 53.85744 * 16 15 14 27 27 C 1.53035 * 109.46391 * 295.07387 * 13 12 3 28 28 H 1.09000 * 109.47382 * 299.99628 * 1 2 3 29 29 H 1.08999 * 109.47345 * 59.99879 * 1 2 3 30 30 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47382 * 240.00371 * 2 1 3 32 32 H 1.08999 * 109.47345 * 120.00121 * 2 1 3 33 33 H 0.97004 * 120.00390 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47058 * 150.00696 * 12 3 2 35 35 H 1.08996 * 109.47559 * 30.00355 * 12 3 2 36 36 H 1.09000 * 109.45833 * 55.03090 * 13 12 3 37 37 H 1.08992 * 109.49853 * 61.43518 * 14 13 12 38 38 H 1.08998 * 109.52380 * 301.35500 * 14 13 12 39 39 H 1.08997 * 109.59006 * 185.58063 * 15 14 13 40 40 H 1.09001 * 109.70452 * 65.21483 * 15 14 13 41 41 H 1.08003 * 120.83458 * 359.97438 * 20 19 17 42 42 H 1.07996 * 120.36328 * 180.26386 * 21 20 19 43 43 H 1.08001 * 119.70371 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.58762 * 65.92842 * 26 16 15 45 45 H 1.09004 * 109.58967 * 186.35074 * 26 16 15 46 46 H 1.09000 * 109.49642 * 298.56671 * 27 13 12 47 47 H 1.09004 * 109.50046 * 58.65703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3457 1.9917 -1.1812 5 1 2.8358 2.9541 -1.1739 6 6 2.0476 1.3738 -2.3878 7 7 1.0052 0.5753 -2.4784 8 14 3.1257 1.6754 -3.8832 9 1 4.1406 0.5963 -3.9874 10 1 2.2842 1.6833 -5.1067 11 1 3.8096 2.9862 -3.7441 12 6 2.1564 2.1093 1.2638 13 6 0.8498 2.8417 1.5759 14 6 0.9506 3.4994 2.9540 15 6 -0.3715 4.2023 3.2779 16 7 -0.6917 5.1331 2.1870 17 6 -0.9500 6.4305 2.4450 18 8 -1.2902 7.1732 1.5446 19 6 -0.8197 6.9500 3.8217 20 6 -1.3545 6.2390 4.9046 21 6 -1.2019 6.7643 6.1732 22 6 -0.5399 7.9734 6.3320 23 9 -0.3931 8.4937 7.5702 24 7 -0.0462 8.6211 5.2914 25 6 -0.1627 8.1566 4.0646 26 6 -0.7308 4.6214 0.8104 27 6 0.6006 3.9148 0.5137 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7967 0.1437 -3.3217 34 1 2.9672 2.8328 1.1796 35 1 2.3790 1.4058 2.0660 36 1 0.0247 2.1295 1.5728 37 1 1.7596 4.2297 2.9504 38 1 1.1516 2.7377 3.7073 39 1 -0.2723 4.7548 4.2123 40 1 -1.1670 3.4633 3.3729 41 1 -1.8698 5.3022 4.7516 42 1 -1.5973 6.2418 7.0317 43 1 0.2537 8.7148 3.2392 44 1 -1.5539 3.9142 0.7067 45 1 -0.8689 5.4503 0.1161 46 1 1.4130 4.6413 0.5329 47 1 0.5523 3.4485 -0.4704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570499762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:41 Heat of formation + Delta-G solvation = -4.612718 kcal Electronic energy + Delta-G solvation = -29550.792448 eV Core-core repulsion = 25456.511481 eV Total energy + Delta-G solvation = -4094.280967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.45164 -41.10560 -39.46789 -37.73736 -35.93060 -33.78806 -32.83966 -31.69482 -30.95948 -30.56489 -29.25030 -26.89317 -25.00942 -24.56015 -23.74005 -22.98403 -22.24969 -20.76300 -20.08016 -19.22917 -18.52506 -17.90389 -17.30809 -16.66072 -16.52827 -16.14510 -15.18547 -15.10503 -14.97115 -14.67455 -14.27461 -14.13048 -13.84599 -13.72481 -13.56728 -13.47401 -13.33231 -13.10411 -12.80645 -12.71670 -12.32161 -11.85925 -11.61244 -11.38456 -11.13180 -11.02177 -10.80904 -10.70037 -10.49195 -10.46651 -10.27841 -10.22686 -10.06579 -9.88684 -9.65694 -9.57327 -9.42502 -9.23253 -8.61863 -8.33904 -6.91204 -5.81263 -3.06422 0.17909 0.56526 2.44184 2.81295 3.08486 3.19720 3.39183 3.48549 3.49563 3.94423 4.16095 4.24797 4.40192 4.50208 4.78203 4.85179 5.02428 5.15876 5.19166 5.25273 5.27200 5.38498 5.44169 5.47505 5.54450 5.69926 5.82833 5.93174 6.02866 6.07194 6.13295 6.21263 6.36485 6.49261 6.54947 6.57945 6.68303 6.82505 6.92974 7.09745 7.10217 7.15357 7.18684 7.32246 7.61933 7.73274 7.99006 8.10400 8.32512 9.22545 9.86708 10.32487 11.22644 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002678 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.425780 B =10451.715710 C =10903.018005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 N -0.596 5.596 4 C -0.248 4.248 5 H 0.073 0.927 6 C 0.002 3.998 7 N -0.888 5.888 8 Si 0.884 3.116 9 H -0.291 1.291 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.158 3.842 13 C -0.111 4.111 14 C -0.130 4.130 15 C 0.095 3.905 16 N -0.595 5.595 17 C 0.562 3.438 18 O -0.533 6.533 19 C -0.185 4.185 20 C -0.020 4.020 21 C -0.198 4.198 22 C 0.323 3.677 23 F -0.109 7.109 24 N -0.514 5.514 25 C 0.190 3.810 26 C 0.111 3.889 27 C -0.119 4.119 28 H 0.014 0.986 29 H 0.097 0.903 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.003 0.997 33 H 0.251 0.749 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.177 0.823 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 7.300 17.236 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 N -0.317 5.317 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.196 4.196 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.206 1.206 12 C 0.030 3.970 13 C -0.132 4.132 14 C -0.169 4.169 15 C -0.028 4.028 16 N -0.327 5.327 17 C 0.348 3.652 18 O -0.411 6.411 19 C -0.191 4.191 20 C -0.046 4.046 21 C -0.219 4.219 22 C 0.169 3.831 23 F -0.088 7.088 24 N -0.228 5.228 25 C 0.033 3.967 26 C -0.010 4.010 27 C -0.157 4.157 28 H 0.033 0.967 29 H 0.116 0.884 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.194 0.806 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.071 0.929 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.930 8.382 16.789 19.401 hybrid contribution 0.043 -0.610 -0.565 0.832 sum -4.887 7.772 16.224 18.641 Atomic orbital electron populations 1.22477 0.99242 0.98136 1.01569 1.20632 0.92573 0.84632 0.97649 1.44231 1.75971 1.10023 1.01456 1.19171 1.31355 1.03788 0.83326 0.90927 1.24636 0.97419 1.00494 0.97047 1.70157 1.23296 1.34905 1.24947 0.86533 0.81219 0.77764 0.83059 1.21818 1.22189 1.20649 1.20792 0.93847 0.93887 0.88450 1.22001 1.02161 0.97184 0.91887 1.21994 0.96036 0.99647 0.99244 1.22194 0.98477 0.92512 0.89620 1.48144 1.67460 1.07724 1.09380 1.17909 0.77964 0.82149 0.87172 1.90819 1.47206 1.56894 1.46147 1.21074 1.04495 0.98341 0.95144 1.21784 0.93900 0.98377 0.90494 1.21787 1.03886 0.96487 0.99730 1.18409 0.94200 0.89767 0.80693 1.91650 1.93273 1.86840 1.37008 1.67107 1.21214 1.35092 0.99365 1.22661 0.91205 0.90662 0.92215 1.21959 0.99460 0.98874 0.80675 1.22010 0.94396 0.96955 1.02342 0.96749 0.88407 0.96558 0.90671 0.97890 0.93854 0.93941 0.94575 0.91022 0.91909 0.91138 0.89906 0.90955 0.82635 0.82653 0.80584 0.91389 0.89338 0.92895 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.59 37.16 0.36 -2.94 16 2 C 0.17 3.81 5.65 -4.04 -0.02 3.79 16 3 N -0.60 -13.29 2.41 -173.24 -0.42 -13.71 16 4 C -0.25 -6.14 7.56 -15.06 -0.11 -6.25 16 5 H 0.07 1.81 7.97 -52.49 -0.42 1.40 16 6 C 0.00 0.05 4.74 -17.43 -0.08 -0.03 16 7 N -0.89 -23.41 8.77 55.49 0.49 -22.92 16 8 Si 0.88 20.79 29.65 -169.99 -5.04 15.76 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.16 2.86 5.21 -4.04 -0.02 2.84 16 13 C -0.11 -1.72 2.29 -90.58 -0.21 -1.93 16 14 C -0.13 -1.53 5.36 -26.61 -0.14 -1.67 16 15 C 0.09 0.95 5.25 -3.71 -0.02 0.93 16 16 N -0.59 -7.55 2.97 -173.66 -0.52 -8.07 16 17 C 0.56 7.48 7.31 -12.38 -0.09 7.39 16 18 O -0.53 -8.99 16.43 5.31 0.09 -8.90 16 19 C -0.19 -1.94 5.20 -104.83 -0.54 -2.49 16 20 C -0.02 -0.15 7.45 -38.89 -0.29 -0.44 16 21 C -0.20 -1.42 10.07 -39.42 -0.40 -1.81 16 22 C 0.32 3.16 8.41 -17.23 -0.14 3.01 16 23 F -0.11 -1.08 17.29 2.25 0.04 -1.04 16 24 N -0.51 -5.83 10.36 -13.22 -0.14 -5.97 16 25 C 0.19 2.04 10.86 -17.13 -0.19 1.85 16 26 C 0.11 1.65 6.45 -3.49 -0.02 1.63 16 27 C -0.12 -2.00 4.97 -26.39 -0.13 -2.13 16 28 H 0.01 0.27 5.95 -51.93 -0.31 -0.04 16 29 H 0.10 2.39 6.05 -51.93 -0.31 2.08 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.90 6.11 -51.93 -0.32 1.59 16 32 H 0.00 0.06 7.96 -51.93 -0.41 -0.35 16 33 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.04 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.04 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.07 1.21 5.80 -51.93 -0.30 0.91 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.66 4.20 -51.93 -0.22 0.44 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.16 0.87 6.63 -52.48 -0.35 0.53 16 42 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.42 7.03 -51.93 -0.36 1.05 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.11 2.28 6.26 -51.93 -0.32 1.96 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -28.61 368.76 -8.67 -37.28 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.68 Total: 0.26 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.06 Total: 1.75 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.58 Total: -50.66 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.04 Total: 15.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.61 -8.67 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570499762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds