Wall clock time and date at job start Tue Mar 31 2020 20:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47230 * 2 1 4 4 C 1.36933 * 120.00227 * 264.91525 * 3 2 1 5 5 H 1.07999 * 119.99801 * 188.69403 * 4 3 2 6 6 C 1.38802 * 119.99980 * 8.69311 * 4 3 2 7 7 N 1.31617 * 120.00259 * 29.85744 * 6 4 3 8 8 Si 1.86804 * 120.00240 * 209.85429 * 6 4 3 9 9 H 1.48496 * 109.46993 * 94.99639 * 8 6 4 10 10 H 1.48500 * 109.47243 * 214.99759 * 8 6 4 11 11 H 1.48501 * 109.47017 * 334.99994 * 8 6 4 12 12 C 1.46504 * 119.99473 * 84.91121 * 3 2 1 13 13 C 1.53001 * 109.47319 * 269.99910 * 12 3 2 14 14 C 1.53038 * 109.46112 * 175.00352 * 13 12 3 15 15 C 1.53195 * 109.31441 * 181.39125 * 14 13 12 16 16 N 1.46932 * 108.77069 * 305.36556 * 15 14 13 17 17 C 1.34782 * 120.62721 * 233.58427 * 16 15 14 18 18 O 1.21566 * 119.99637 * 184.31640 * 17 16 15 19 19 C 1.47723 * 119.99891 * 4.31999 * 17 16 15 20 20 C 1.40157 * 120.53262 * 314.33683 * 19 17 16 21 21 C 1.38148 * 118.32442 * 179.75733 * 20 19 17 22 22 C 1.38760 * 119.28428 * 0.52861 * 21 20 19 23 23 F 1.35099 * 119.49097 * 179.73213 * 22 21 20 24 24 N 1.32139 * 121.01291 * 359.45484 * 22 21 20 25 25 C 1.31698 * 121.84361 * 0.27721 * 24 22 21 26 26 C 1.46917 * 118.74050 * 53.85744 * 16 15 14 27 27 C 1.53035 * 109.46391 * 295.07387 * 13 12 3 28 28 H 1.09000 * 109.47382 * 299.99628 * 1 2 3 29 29 H 1.08999 * 109.47345 * 59.99879 * 1 2 3 30 30 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47382 * 240.00371 * 2 1 3 32 32 H 1.08999 * 109.47345 * 120.00121 * 2 1 3 33 33 H 0.97004 * 120.00390 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47058 * 150.00696 * 12 3 2 35 35 H 1.08996 * 109.47559 * 30.00355 * 12 3 2 36 36 H 1.09000 * 109.45833 * 55.03090 * 13 12 3 37 37 H 1.08992 * 109.49853 * 61.43518 * 14 13 12 38 38 H 1.08998 * 109.52380 * 301.35500 * 14 13 12 39 39 H 1.08997 * 109.59006 * 185.58063 * 15 14 13 40 40 H 1.09001 * 109.70452 * 65.21483 * 15 14 13 41 41 H 1.08003 * 120.83458 * 359.97438 * 20 19 17 42 42 H 1.07996 * 120.36328 * 180.26386 * 21 20 19 43 43 H 1.08001 * 119.70371 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.58762 * 65.92842 * 26 16 15 45 45 H 1.09004 * 109.58967 * 186.35074 * 26 16 15 46 46 H 1.09000 * 109.49642 * 298.56671 * 27 13 12 47 47 H 1.09004 * 109.50046 * 58.65703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3457 1.9917 -1.1812 5 1 2.8358 2.9541 -1.1739 6 6 2.0476 1.3738 -2.3878 7 7 1.0052 0.5753 -2.4784 8 14 3.1257 1.6754 -3.8832 9 1 4.1406 0.5963 -3.9874 10 1 2.2842 1.6833 -5.1067 11 1 3.8096 2.9862 -3.7441 12 6 2.1564 2.1093 1.2638 13 6 0.8498 2.8417 1.5759 14 6 0.9506 3.4994 2.9540 15 6 -0.3715 4.2023 3.2779 16 7 -0.6917 5.1331 2.1870 17 6 -0.9500 6.4305 2.4450 18 8 -1.2902 7.1732 1.5446 19 6 -0.8197 6.9500 3.8217 20 6 -1.3545 6.2390 4.9046 21 6 -1.2019 6.7643 6.1732 22 6 -0.5399 7.9734 6.3320 23 9 -0.3931 8.4937 7.5702 24 7 -0.0462 8.6211 5.2914 25 6 -0.1627 8.1566 4.0646 26 6 -0.7308 4.6214 0.8104 27 6 0.6006 3.9148 0.5137 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7967 0.1437 -3.3217 34 1 2.9672 2.8328 1.1796 35 1 2.3790 1.4058 2.0660 36 1 0.0247 2.1295 1.5728 37 1 1.7596 4.2297 2.9504 38 1 1.1516 2.7377 3.7073 39 1 -0.2723 4.7548 4.2123 40 1 -1.1670 3.4633 3.3729 41 1 -1.8698 5.3022 4.7516 42 1 -1.5973 6.2418 7.0317 43 1 0.2537 8.7148 3.2392 44 1 -1.5539 3.9142 0.7067 45 1 -0.8689 5.4503 0.1161 46 1 1.4130 4.6413 0.5329 47 1 0.5523 3.4485 -0.4704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570499762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:40 Heat of formation + Delta-G solvation = -20.152277 kcal Electronic energy + Delta-G solvation = -29551.466294 eV Core-core repulsion = 25456.511481 eV Total energy + Delta-G solvation = -4094.954813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.16729 -41.98099 -40.41326 -39.02398 -37.43631 -34.87134 -33.93881 -32.77725 -32.42538 -31.63235 -30.88800 -28.29876 -26.22096 -25.35783 -25.06380 -24.04676 -23.58888 -22.19992 -21.44727 -20.36431 -19.24607 -18.73651 -18.50568 -18.16160 -17.34971 -17.11450 -16.82944 -16.19870 -15.82540 -15.70690 -15.51650 -15.37608 -15.13962 -14.88903 -14.72048 -14.42139 -14.32178 -14.25491 -13.97290 -13.81386 -13.64294 -13.56657 -13.08531 -12.95652 -12.71299 -12.60249 -12.36246 -12.17429 -11.93259 -11.86465 -11.62381 -11.38511 -11.35644 -11.18999 -11.00648 -10.90063 -10.66260 -10.25600 -10.20420 -9.69171 -8.73565 -7.76548 -4.99907 -0.56736 -0.07692 1.46000 1.47378 1.53496 1.57324 1.84944 2.37962 2.42599 2.59175 3.21146 3.31158 3.39133 3.59961 3.71737 3.78920 3.94374 4.00490 4.12290 4.20757 4.27259 4.41327 4.51786 4.53842 4.64935 4.66445 4.72557 4.78874 4.81150 4.89815 4.92983 5.01178 5.11621 5.13191 5.22778 5.27963 5.32071 5.33098 5.38832 5.45262 5.66657 5.72669 5.76957 5.87911 6.28386 6.28453 6.41016 6.42791 6.96402 7.30349 8.03687 8.43148 9.25134 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002678 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.425780 B =10451.715710 C =10903.018005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.172 3.828 3 N -0.608 5.608 4 C -0.236 4.236 5 H 0.065 0.935 6 C -0.043 4.043 7 N -0.905 5.905 8 Si 0.929 3.071 9 H -0.296 1.296 10 H -0.304 1.304 11 H -0.279 1.279 12 C 0.153 3.847 13 C -0.100 4.100 14 C -0.123 4.123 15 C 0.093 3.907 16 N -0.593 5.593 17 C 0.563 3.437 18 O -0.578 6.578 19 C -0.193 4.193 20 C -0.009 4.009 21 C -0.173 4.173 22 C 0.309 3.691 23 F -0.113 7.113 24 N -0.540 5.540 25 C 0.181 3.819 26 C 0.121 3.879 27 C -0.109 4.109 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.243 0.757 34 H 0.035 0.965 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.188 0.812 42 H 0.196 0.804 43 H 0.172 0.828 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.040 0.960 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 6.643 20.923 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.047 3.953 3 N -0.329 5.329 4 C -0.366 4.366 5 H 0.083 0.917 6 C -0.239 4.239 7 N -0.552 5.552 8 Si 0.761 3.239 9 H -0.224 1.224 10 H -0.231 1.231 11 H -0.204 1.204 12 C 0.027 3.973 13 C -0.121 4.121 14 C -0.162 4.162 15 C -0.028 4.028 16 N -0.324 5.324 17 C 0.351 3.649 18 O -0.459 6.459 19 C -0.198 4.198 20 C -0.034 4.034 21 C -0.194 4.194 22 C 0.156 3.844 23 F -0.092 7.092 24 N -0.255 5.255 25 C 0.023 3.977 26 C -0.001 4.001 27 C -0.147 4.147 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.205 0.795 42 H 0.213 0.787 43 H 0.189 0.811 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.617 7.726 20.526 22.640 hybrid contribution 0.305 -0.364 -1.623 1.691 sum -5.312 7.362 18.904 20.970 Atomic orbital electron populations 1.22240 0.98375 0.98511 1.00800 1.20540 0.93235 0.84543 0.97003 1.44372 1.76070 1.10400 1.02102 1.19238 1.29853 1.03099 0.84447 0.91745 1.25077 0.98494 1.01596 0.98732 1.70290 1.24157 1.36147 1.24628 0.85805 0.79818 0.77323 0.80999 1.22386 1.23142 1.20426 1.20981 0.94999 0.94146 0.87130 1.21770 1.00058 0.96389 0.93842 1.21929 0.97051 1.00145 0.97036 1.22468 0.98153 0.92630 0.89535 1.48156 1.67072 1.08148 1.09012 1.18298 0.76886 0.81784 0.87931 1.90798 1.49219 1.57979 1.47871 1.20833 1.05985 0.98784 0.94203 1.22100 0.92813 0.98963 0.89551 1.22118 1.01662 0.94913 1.00682 1.18770 0.94699 0.90753 0.80212 1.91644 1.93359 1.87081 1.37091 1.67022 1.22393 1.36199 0.99884 1.22588 0.91908 0.91048 0.92120 1.21633 0.98310 0.98046 0.82110 1.21782 0.95133 0.97020 1.00757 0.94731 0.91809 0.95549 0.94147 0.95556 0.94737 0.94615 0.92415 0.91640 0.92374 0.88276 0.86992 0.88606 0.79534 0.78725 0.81095 0.90911 0.91298 0.94119 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 9.59 71.98 0.69 -5.13 16 2 C 0.17 7.58 5.65 86.38 0.49 8.07 16 3 N -0.61 -26.92 2.41 -702.01 -1.69 -28.61 16 4 C -0.24 -11.93 7.56 84.03 0.64 -11.30 16 5 H 0.06 3.30 7.97 -2.91 -0.02 3.28 16 6 C -0.04 -2.29 4.74 84.86 0.40 -1.89 16 7 N -0.91 -49.19 8.77 21.65 0.19 -49.00 16 8 Si 0.93 43.97 29.65 68.60 2.03 46.01 16 9 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 C 0.15 5.30 5.21 86.38 0.45 5.75 16 13 C -0.10 -2.89 2.29 -10.77 -0.02 -2.91 16 14 C -0.12 -2.40 5.36 30.67 0.16 -2.23 16 15 C 0.09 1.45 5.25 86.36 0.45 1.90 16 16 N -0.59 -13.86 2.97 -821.61 -2.44 -16.30 16 17 C 0.56 14.33 7.31 86.75 0.63 14.97 16 18 O -0.58 -19.80 16.43 -3.92 -0.06 -19.86 16 19 C -0.19 -3.61 5.20 -20.00 -0.10 -3.71 16 20 C -0.01 -0.10 7.45 22.71 0.17 0.07 16 21 C -0.17 -1.65 10.07 22.37 0.23 -1.43 16 22 C 0.31 5.21 8.41 84.77 0.71 5.92 16 23 F -0.11 -1.98 17.29 44.97 0.78 -1.20 16 24 N -0.54 -11.60 10.36 -195.72 -2.03 -13.63 16 25 C 0.18 3.73 10.86 85.02 0.92 4.65 16 26 C 0.12 3.59 6.45 86.51 0.56 4.14 16 27 C -0.11 -3.67 4.97 30.81 0.15 -3.52 16 28 H 0.03 1.26 5.95 -2.39 -0.01 1.24 16 29 H 0.06 3.14 6.05 -2.39 -0.01 3.13 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 2.06 6.11 -2.39 -0.01 2.05 16 32 H 0.03 1.03 7.96 -2.39 -0.02 1.01 16 33 H 0.24 13.17 8.31 -92.71 -0.77 12.40 16 34 H 0.04 1.28 8.03 -2.39 -0.02 1.26 16 35 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 36 H 0.07 2.02 5.80 -2.39 -0.01 2.01 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.15 4.20 -2.39 -0.01 1.14 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.19 0.90 6.63 -2.91 -0.02 0.88 16 42 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 43 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.07 2.31 7.03 -2.38 -0.02 2.29 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 2.81 6.26 -2.38 -0.01 2.79 16 Total: -1.00 -65.92 368.76 4.30 -61.62 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.99 Total: 7.61 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.53 Total: 13.35 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.96 Total: -107.54 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.92 4.30 -61.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570499762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.470 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds