Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 O 1.42908 * 109.46941 * 240.00716 * 2 1 3 5 5 C 1.42897 * 113.99779 * 90.00158 * 4 2 1 6 6 C 1.50700 * 109.46923 * 180.02562 * 5 4 2 7 7 C 1.35349 * 126.91313 * 0.03847 * 6 5 4 8 8 N 1.33777 * 106.49799 * 179.97438 * 7 6 5 9 9 N 1.28634 * 108.88349 * 359.97438 * 8 7 6 10 10 N 1.28715 * 110.18090 * 359.97438 * 9 8 7 11 11 H 0.97000 * 125.86523 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47327 * 120.00849 * 2 1 3 13 13 O 1.21275 * 119.99914 * 119.99996 * 12 2 1 14 14 N 1.34773 * 119.99723 * 299.99714 * 12 2 1 15 15 C 1.47400 * 125.59269 * 0.02562 * 14 12 2 16 16 C 1.54847 * 104.81291 * 204.60712 * 15 14 12 17 17 C 1.55119 * 101.78066 * 322.81964 * 16 15 14 18 18 H 1.09002 * 113.46164 * 158.33262 * 17 16 15 19 19 C 1.54047 * 108.25857 * 285.18222 * 17 16 15 20 20 N 1.46702 * 106.82753 * 135.80716 * 19 17 16 21 21 C 1.36932 * 125.31939 * 161.84642 * 20 19 17 22 22 H 1.08000 * 120.00440 * 359.97438 * 21 20 19 23 23 C 1.38823 * 119.99868 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99965 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46858 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.46761 * 119.99966 * 25 23 21 28 28 H 1.48493 * 109.47191 * 240.00149 * 25 23 21 29 29 C 1.46632 * 109.35787 * 341.81830 * 20 19 17 30 30 C 1.46737 * 125.58794 * 179.71956 * 14 12 2 31 31 H 1.08998 * 111.32534 * 56.12098 * 30 14 12 32 32 H 1.08993 * 109.47537 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46803 * 299.99565 * 1 2 3 34 34 H 1.09005 * 109.47375 * 59.98693 * 1 2 3 35 35 H 1.08995 * 109.47914 * 60.00107 * 5 4 2 36 36 H 1.09001 * 109.46975 * 299.99846 * 5 4 2 37 37 H 1.07997 * 126.75207 * 359.97438 * 7 6 5 38 38 H 1.08996 * 110.37110 * 323.44702 * 15 14 12 39 39 H 1.09006 * 110.36345 * 85.77386 * 15 14 12 40 40 H 1.09004 * 110.96389 * 80.94433 * 16 15 14 41 41 H 1.09002 * 110.96709 * 204.69366 * 16 15 14 42 42 H 1.08995 * 109.98899 * 255.14636 * 19 17 16 43 43 H 1.09002 * 109.98561 * 16.46672 * 19 17 16 44 44 H 0.96994 * 119.99739 * 179.97438 * 24 23 21 45 45 H 1.08998 * 109.75758 * 120.92784 * 29 20 19 46 46 H 1.09005 * 109.76215 * 241.63203 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2000 0.1832 -2.2941 6 6 2.7001 -0.6280 -3.4615 7 6 2.9406 -1.9598 -3.4824 8 7 3.3687 -2.2492 -4.7164 9 7 3.3914 -1.1683 -5.4134 10 7 2.9973 -0.1718 -4.7003 11 1 2.9268 0.7483 -4.9992 12 6 2.0323 -0.7106 1.2303 13 8 2.7296 -1.6966 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 0.8706 0.9314 2.7322 16 6 1.3032 1.3996 4.1434 17 6 1.5516 0.0482 4.8632 18 1 2.2075 0.1321 5.7297 19 6 0.1848 -0.5838 5.1884 20 7 0.2791 -2.0046 4.8354 21 6 -0.5644 -2.9880 5.2785 22 1 -1.3788 -2.7418 5.9437 23 6 -0.3728 -4.3017 4.8725 24 7 0.6199 -4.6019 4.0621 25 14 -1.5232 -5.6434 5.4774 26 1 -2.5492 -5.0496 6.3717 27 1 -2.1906 -6.2839 4.3158 28 1 -0.7445 -6.6631 6.2250 29 6 1.4175 -2.2068 3.9336 30 6 2.1215 -0.8469 3.7293 31 1 3.2065 -0.9269 3.7952 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5140 -0.8899 35 1 2.9319 0.9515 -2.0450 36 1 1.2537 0.6550 -2.5587 37 1 2.8120 -2.6526 -2.6640 38 1 1.0627 1.7133 1.9975 39 1 -0.1847 0.6583 2.7299 40 1 2.2184 1.9898 4.0950 41 1 0.5049 1.9599 4.6302 42 1 -0.0313 -0.4776 6.2514 43 1 -0.5969 -0.1045 4.5990 44 1 0.7540 -5.5198 3.7788 45 1 2.1203 -2.9107 4.3794 46 1 1.0657 -2.5935 2.9771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575834019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = 65.151911 kcal Electronic energy + Delta-G solvation = -29782.062221 eV Core-core repulsion = 25710.726437 eV Total energy + Delta-G solvation = -4071.335784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.49070 -40.41573 -38.78304 -37.21908 -34.89284 -33.72010 -32.90087 -32.10478 -30.91818 -30.76057 -28.61182 -26.97139 -26.49045 -24.72461 -24.37742 -23.22005 -22.27308 -21.94514 -20.82589 -19.79353 -18.94684 -18.38986 -17.42887 -16.85474 -16.66822 -16.34108 -15.93254 -15.56082 -15.11305 -14.81857 -14.41105 -14.33066 -14.02138 -13.79991 -13.46213 -13.18501 -13.05252 -12.71194 -12.47529 -12.31717 -12.21730 -11.95137 -11.87324 -11.55006 -11.48383 -11.11514 -11.07147 -10.99860 -10.79973 -10.74111 -10.47627 -10.31335 -10.25870 -10.12968 -9.85161 -9.69872 -9.36693 -9.20208 -8.57715 -8.21791 -6.80200 -5.65925 -3.02424 1.27667 2.17095 2.42122 2.83792 3.02197 3.42304 3.46705 3.50484 3.65524 4.20029 4.47063 4.51553 4.58257 4.62349 4.69844 4.73872 4.77540 4.94331 4.95424 5.08140 5.15125 5.28508 5.40536 5.45540 5.51462 5.53951 5.56795 5.69278 5.71606 5.81432 5.97017 6.08829 6.11723 6.14553 6.28027 6.41349 6.49793 6.52876 6.60782 6.73779 6.86270 7.56366 7.66611 7.87622 7.93362 8.23685 8.30811 8.53172 9.25284 9.86181 10.49175 11.43726 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.003119 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.065306 B = 8974.313817 C =10468.871688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 H 0.084 0.916 4 O -0.343 6.343 5 C 0.138 3.862 6 C -0.021 4.021 7 C -0.011 4.011 8 N -0.266 5.266 9 N -0.081 5.081 10 N -0.388 5.388 11 H 0.446 0.554 12 C 0.527 3.473 13 O -0.506 6.506 14 N -0.601 5.601 15 C 0.098 3.902 16 C -0.125 4.125 17 C -0.111 4.111 18 H 0.097 0.903 19 C 0.143 3.857 20 N -0.602 5.602 21 C -0.235 4.235 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.913 5.913 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.178 3.822 30 C 0.115 3.885 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.200 0.800 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.051 0.949 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 20.011 -9.705 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.020 3.980 3 H 0.102 0.898 4 O -0.260 6.260 5 C 0.059 3.941 6 C -0.155 4.155 7 C -0.168 4.168 8 N -0.134 5.134 9 N -0.061 5.061 10 N -0.111 5.111 11 H 0.291 0.709 12 C 0.313 3.687 13 O -0.380 6.380 14 N -0.338 5.338 15 C -0.025 4.025 16 C -0.163 4.163 17 C -0.130 4.130 18 H 0.115 0.885 19 C 0.017 3.983 20 N -0.329 5.329 21 C -0.363 4.363 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.560 5.560 25 Si 0.741 3.259 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.052 3.948 30 C 0.012 3.988 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.217 0.783 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.648 18.361 -11.239 21.689 hybrid contribution -1.152 0.528 1.139 1.704 sum 1.496 18.889 -10.099 21.472 Atomic orbital electron populations 1.22382 0.93260 1.04827 1.03154 1.21869 0.95316 0.95789 0.84998 0.89784 1.88044 1.86739 1.32897 1.18305 1.20469 0.99578 0.90550 0.83488 1.21744 1.08757 0.96410 0.88542 1.23632 1.02423 0.94189 0.96531 1.75152 1.16357 1.18071 1.03774 1.78294 1.17785 0.90361 1.19651 1.44909 1.45661 1.12414 1.08139 0.70875 1.19670 0.81259 0.84998 0.82787 1.90777 1.36941 1.24765 1.85485 1.48296 1.51206 1.29149 1.05107 1.22446 0.95856 0.87258 0.96990 1.22769 1.01653 0.97186 0.94718 1.23159 0.99078 0.93607 0.97189 0.88460 1.21292 0.92750 0.86679 0.97626 1.44203 1.32673 1.01454 1.54553 1.19028 1.06893 0.86464 1.23939 0.90413 1.24849 0.98497 0.97301 0.99596 1.69992 1.30968 1.18047 1.36978 0.86077 0.79841 0.82151 0.77852 1.20571 1.21754 1.21718 1.21390 0.88860 0.89166 0.95346 1.22842 0.98660 0.96409 0.80885 0.90169 0.90427 0.90045 0.91646 0.91096 0.91004 0.78278 0.91353 0.90716 0.91054 0.89897 0.94761 0.96523 0.93618 0.93089 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.33 37.16 0.35 -1.55 16 2 C 0.08 0.97 2.48 -27.88 -0.07 0.90 16 3 H 0.08 0.68 7.48 -51.93 -0.39 0.30 16 4 O -0.34 -4.38 8.91 -55.14 -0.49 -4.87 16 5 C 0.14 1.12 6.37 36.01 0.23 1.35 16 6 C -0.02 -0.22 7.28 -82.09 -0.60 -0.81 16 7 C -0.01 -0.15 11.41 -17.73 -0.20 -0.35 16 8 N -0.27 -3.90 12.41 30.23 0.38 -3.52 16 9 N -0.08 -1.00 13.38 60.35 0.81 -0.19 16 10 N -0.39 -3.28 6.98 33.54 0.23 -3.05 16 11 H 0.45 1.65 8.96 -190.40 -1.71 -0.06 16 12 C 0.53 9.05 6.87 -10.99 -0.08 8.98 16 13 O -0.51 -11.28 16.48 -14.35 -0.24 -11.52 16 14 N -0.60 -9.64 2.98 -161.82 -0.48 -10.12 16 15 C 0.10 1.13 4.67 -2.58 -0.01 1.12 16 16 C -0.12 -1.35 6.34 -24.64 -0.16 -1.51 16 17 C -0.11 -1.69 4.28 -87.74 -0.38 -2.07 16 18 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.14 2.72 6.46 -3.39 -0.02 2.70 16 20 N -0.60 -15.05 3.38 -171.40 -0.58 -15.63 16 21 C -0.24 -6.50 10.25 -15.06 -0.15 -6.66 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 24 N -0.91 -27.64 10.24 55.49 0.57 -27.07 16 25 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C 0.18 4.41 4.94 -3.19 -0.02 4.39 16 30 C 0.12 2.15 3.66 -65.80 -0.24 1.91 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.80 4.99 -51.93 -0.26 0.54 16 34 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 37 H 0.20 2.72 7.94 -52.49 -0.42 2.30 16 38 H 0.07 0.55 7.31 -51.93 -0.38 0.17 16 39 H 0.07 0.92 6.19 -51.93 -0.32 0.60 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.31 6.59 -51.93 -0.34 -0.03 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.05 1.44 7.33 -51.93 -0.38 1.06 16 46 H 0.06 1.59 6.80 -51.93 -0.35 1.24 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -37.73 367.79 -8.59 -46.32 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.86 Total: -1.33 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.44 Total: 8.13 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.92 Total: -59.59 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.73 Total: -16.39 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.73 -8.59 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575834019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.468 kcal (2) G-P(sol) polarization free energy of solvation -37.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds