Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47479 * 2 1 4 4 C 1.46497 * 119.99618 * 269.99735 * 3 2 1 5 5 C 1.50697 * 109.47323 * 269.99682 * 4 3 2 6 6 H 1.08001 * 119.99853 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00021 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00057 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46976 * 90.00094 * 9 7 5 11 11 H 1.48502 * 109.47005 * 209.99475 * 9 7 5 12 12 H 1.48496 * 109.47160 * 329.99878 * 9 7 5 13 13 C 1.34774 * 119.99877 * 89.99911 * 3 2 1 14 14 O 1.21286 * 119.99824 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00440 * 359.97438 * 13 3 2 16 16 N 1.46491 * 109.47649 * 180.02562 * 15 13 3 17 17 C 1.35317 * 125.87001 * 124.98005 * 16 15 13 18 18 C 1.35349 * 106.17446 * 180.02562 * 17 16 15 19 19 C 1.50702 * 126.75092 * 180.02562 * 18 17 16 20 20 N 1.46493 * 109.47361 * 94.99689 * 19 18 17 21 21 C 1.46770 * 124.35105 * 90.00196 * 20 19 18 22 22 C 1.54472 * 105.47251 * 197.01502 * 21 20 19 23 23 C 1.54625 * 101.77091 * 334.58520 * 22 21 20 24 24 C 1.34419 * 124.35179 * 269.70194 * 20 19 18 25 25 O 1.21283 * 124.93687 * 359.57171 * 24 20 19 26 26 N 1.33777 * 106.49799 * 0.02562 * 18 17 16 27 27 N 1.28634 * 108.88349 * 359.97438 * 26 18 17 28 28 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47109 * 300.00199 * 1 2 3 30 30 H 1.08999 * 109.46682 * 60.00150 * 1 2 3 31 31 H 1.09005 * 109.46959 * 239.99772 * 2 1 3 32 32 H 1.09008 * 109.46694 * 120.00081 * 2 1 3 33 33 H 1.09000 * 109.47262 * 30.00570 * 4 3 2 34 34 H 1.09004 * 109.46767 * 149.99827 * 4 3 2 35 35 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.47351 * 59.99659 * 15 13 3 37 37 H 1.09006 * 109.47108 * 300.00722 * 15 13 3 38 38 H 1.07995 * 126.91332 * 0.07575 * 17 16 15 39 39 H 1.09008 * 109.46915 * 214.99942 * 19 18 17 40 40 H 1.08997 * 109.46825 * 334.99340 * 19 18 17 41 41 H 1.09000 * 110.24089 * 316.01829 * 21 20 19 42 42 H 1.08998 * 110.24361 * 77.92294 * 21 20 19 43 43 H 1.09006 * 110.97164 * 92.70662 * 22 21 20 44 44 H 1.08997 * 110.96862 * 216.46025 * 22 21 20 45 45 H 1.08999 * 110.49231 * 143.47734 * 23 22 21 46 46 H 1.09002 * 110.48438 * 265.99163 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6860 1.8348 -1.7037 6 1 4.3428 1.2301 -1.0961 7 6 4.1493 2.3893 -2.8780 8 7 5.3913 2.1822 -3.2578 9 14 3.0130 3.4348 -3.9293 10 1 3.1165 4.8551 -3.5084 11 1 3.4060 3.3115 -5.3561 12 1 1.6133 2.9689 -3.7594 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9914 1.3064 2.4723 16 7 2.3082 2.2040 3.5858 17 6 1.4732 2.5389 4.5965 18 6 2.1674 3.3830 5.3951 19 6 1.6746 4.0377 6.6598 20 7 2.0798 3.2340 7.8157 21 6 3.3412 3.4097 8.5452 22 6 3.5299 2.1114 9.3606 23 6 2.0712 1.6232 9.5185 24 6 1.3417 2.2447 8.3479 25 8 0.2507 1.8990 7.9464 26 7 3.3770 3.5218 4.8408 27 7 3.4285 2.8103 3.7703 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1409 -1.1384 35 1 5.7173 2.5727 -4.0837 36 1 2.6211 0.4185 2.5303 37 1 0.9432 1.0126 2.5298 38 1 0.4576 2.2002 4.7381 39 1 2.1037 5.0363 6.7431 40 1 0.5874 4.1108 6.6312 41 1 4.1667 3.5391 7.8454 42 1 3.2746 4.2693 9.2121 43 1 4.1262 1.3861 8.8069 44 1 3.9779 2.3223 10.3316 45 1 2.0252 0.5355 9.4664 46 1 1.6502 1.9773 10.4595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646141533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = 45.782542 kcal Electronic energy + Delta-G solvation = -28844.249893 eV Core-core repulsion = 24772.074190 eV Total energy + Delta-G solvation = -4072.175703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.18747 -40.51702 -39.39941 -36.64494 -35.71756 -34.75885 -33.53425 -32.74863 -30.81211 -30.54596 -29.31629 -27.83106 -27.29801 -26.61515 -23.22601 -23.05410 -22.34704 -21.76658 -21.49170 -19.68770 -18.70896 -17.52153 -17.22859 -17.03405 -16.88408 -16.74244 -15.67408 -15.55754 -15.33234 -15.09693 -14.70037 -14.29971 -14.04987 -13.99621 -13.85068 -13.71667 -13.43112 -13.17542 -12.89570 -12.75240 -12.48582 -12.43460 -12.30512 -11.94861 -11.78334 -11.57414 -11.44434 -11.35386 -11.10802 -10.90938 -10.75980 -10.58362 -10.32399 -10.22988 -10.05596 -9.61157 -9.23184 -9.22160 -9.01473 -8.63858 -7.94389 -6.13287 -4.13136 1.63638 2.18204 2.35203 2.42979 2.95170 3.09971 3.24806 3.30298 3.33123 3.53963 4.02911 4.16148 4.24423 4.34631 4.48811 4.49333 4.58293 4.71875 4.76680 4.84017 4.89171 5.09482 5.12667 5.19418 5.24664 5.31529 5.33498 5.37743 5.41826 5.47473 5.49396 5.65161 5.74974 5.83578 5.98534 6.10158 6.21321 6.21665 6.48925 6.61530 6.81470 6.86497 7.12587 7.52827 7.90890 7.95893 8.38085 8.64040 8.66140 8.89818 9.45679 10.99966 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.002465 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.933972 B =11358.600879 C =11980.219232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.219 3.781 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.497 3.503 14 O -0.508 6.508 15 C 0.093 3.907 16 N -0.276 5.276 17 C -0.031 4.031 18 C -0.055 4.055 19 C 0.217 3.783 20 N -0.612 5.612 21 C 0.100 3.900 22 C -0.132 4.132 23 C -0.155 4.155 24 C 0.517 3.483 25 O -0.534 6.534 26 N -0.265 5.265 27 N -0.041 5.041 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.188 0.812 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -3.852 23.823 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.318 5.318 4 C 0.099 3.901 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.280 3.720 14 O -0.383 6.383 15 C -0.032 4.032 16 N -0.068 5.068 17 C -0.182 4.182 18 C -0.193 4.193 19 C 0.094 3.906 20 N -0.345 5.345 21 C -0.023 4.023 22 C -0.170 4.170 23 C -0.195 4.195 24 C 0.305 3.695 25 O -0.411 6.411 26 N -0.133 5.133 27 N -0.021 5.021 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.205 0.795 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.260 -3.096 22.799 24.802 hybrid contribution -1.494 0.117 -0.557 1.598 sum -10.754 -2.979 22.242 24.885 Atomic orbital electron populations 1.22259 0.96389 1.01984 1.02373 1.21566 0.93627 0.83552 1.03630 1.47904 1.63868 1.13482 1.06586 1.19708 0.97656 0.93341 0.79423 1.21278 0.95178 1.33316 1.07262 0.90643 1.24848 0.95000 0.95707 0.97335 1.69891 1.15078 1.44721 1.23526 0.86865 0.81334 0.81687 0.79862 1.19881 1.20961 1.19119 1.19882 0.80028 0.87447 0.84620 1.90805 1.43815 1.17362 1.86272 1.22111 1.04744 0.92224 0.84148 1.46875 1.10114 1.31791 1.18020 1.23395 0.99826 1.03614 0.91407 1.22181 0.92968 1.03506 1.00648 1.19401 1.00210 0.92919 0.78113 1.48325 1.20685 1.35564 1.29975 1.22152 0.86603 0.98103 0.95482 1.22596 0.96018 0.97072 1.01310 1.22326 0.96022 1.02801 0.98378 1.20960 0.84941 0.79497 0.84130 1.90711 1.20267 1.64275 1.65868 1.75080 1.18494 1.16813 1.02895 1.78534 1.05508 1.06032 1.11990 0.91534 0.93140 0.91860 0.88970 0.91439 0.94876 0.94541 0.92459 0.85677 0.85367 0.79451 0.88328 0.88207 0.89563 0.90787 0.89998 0.89097 0.88151 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.10 1.35 5.93 -4.04 -0.02 1.32 16 3 N -0.59 -11.14 2.46 -175.05 -0.43 -11.57 16 4 C 0.22 5.15 4.23 -5.20 -0.02 5.13 16 5 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.50 9.62 7.69 -10.99 -0.08 9.54 16 14 O -0.51 -12.59 15.25 5.55 0.08 -12.50 16 15 C 0.09 1.26 5.49 -5.20 -0.03 1.23 16 16 N -0.28 -4.38 3.20 -62.45 -0.20 -4.58 16 17 C -0.03 -0.42 11.50 -17.04 -0.20 -0.61 16 18 C -0.05 -0.76 6.83 -82.77 -0.57 -1.32 16 19 C 0.22 2.23 6.50 -5.20 -0.03 2.20 16 20 N -0.61 -5.80 2.92 -173.78 -0.51 -6.31 16 21 C 0.10 0.68 7.35 -3.12 -0.02 0.65 16 22 C -0.13 -0.68 7.18 -25.10 -0.18 -0.87 16 23 C -0.16 -1.00 6.86 -26.74 -0.18 -1.18 16 24 C 0.52 5.41 8.02 -10.86 -0.09 5.32 16 25 O -0.53 -7.49 17.59 5.55 0.10 -7.39 16 26 N -0.26 -4.63 12.41 33.29 0.41 -4.22 16 27 N -0.04 -0.79 12.13 60.35 0.73 -0.05 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.48 7.22 -51.93 -0.37 0.10 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.07 0.70 6.44 -51.92 -0.33 0.37 16 33 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 34 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.13 1.43 7.40 -51.93 -0.38 1.05 16 37 H 0.13 1.17 7.11 -51.93 -0.37 0.80 16 38 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.10 0.94 7.92 -51.93 -0.41 0.53 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -39.78 387.19 -6.19 -45.97 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.84 Total: -1.84 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.49 Total: 6.65 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.78 Total: -53.45 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.18 Total: -19.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.78 -6.19 -45.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646141533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.753 kcal (2) G-P(sol) polarization free energy of solvation -39.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds