Wall clock time and date at job start Tue Mar 31 2020 19:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35855 * 126.13594 * 90.02742 * 3 2 1 5 5 N 1.30170 * 109.00459 * 179.97438 * 4 3 2 6 6 C 1.35752 * 108.86728 * 0.02562 * 5 4 3 7 7 C 1.47321 * 126.23568 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00394 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00013 * 359.96785 * 7 6 5 10 10 C 1.46498 * 120.00012 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.85141 * 336.19293 * 10 9 7 12 12 C 1.53777 * 113.61414 * 107.50536 * 10 9 7 13 13 C 1.53781 * 87.07979 * 89.11486 * 12 10 9 14 14 H 1.08996 * 113.61679 * 270.88014 * 13 12 10 15 15 N 1.46904 * 113.61226 * 139.98327 * 13 12 10 16 16 C 1.46896 * 111.00341 * 107.50260 * 15 13 12 17 17 C 1.50700 * 109.47421 * 179.97438 * 16 15 13 18 18 O 1.21293 * 119.99910 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99604 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00554 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99489 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99739 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47173 * 119.99771 * 24 22 20 27 27 H 1.48502 * 109.46998 * 240.00087 * 24 22 20 28 28 C 1.53780 * 87.08192 * 25.43556 * 13 12 10 29 29 C 1.35375 * 126.13548 * 269.71620 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 35 35 H 1.08000 * 125.49350 * 359.97438 * 4 3 2 36 36 H 0.97003 * 119.99761 * 0.02562 * 9 7 6 37 37 H 1.09004 * 113.61163 * 203.66312 * 12 10 9 38 38 H 1.08995 * 113.61772 * 334.56504 * 12 10 9 39 39 H 1.00903 * 110.99908 * 231.45871 * 15 13 12 40 40 H 1.09000 * 109.46737 * 299.99543 * 16 15 13 41 41 H 1.09002 * 109.47244 * 59.99857 * 16 15 13 42 42 H 0.96993 * 120.00425 * 0.02562 * 19 17 16 43 43 H 0.97002 * 120.00034 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.60685 * 220.02095 * 28 13 12 45 45 H 1.08995 * 113.69384 * 89.12809 * 28 13 12 46 46 H 1.07992 * 126.56831 * 359.96918 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1364 1.0972 5 7 2.7007 3.3091 0.7138 6 6 2.7136 3.3481 -0.6431 7 6 3.1188 4.4926 -1.4776 8 8 3.0867 4.4029 -2.6901 9 7 3.5251 5.6393 -0.8973 10 6 3.9275 6.7776 -1.7271 11 1 4.2519 6.4807 -2.7245 12 6 2.9103 7.9308 -1.7259 13 6 3.6610 8.4873 -0.5046 14 1 3.2888 8.1079 0.4469 15 7 3.8071 9.9490 -0.5195 16 6 2.9281 10.5762 0.4764 17 6 3.1057 12.0720 0.4322 18 8 3.8872 12.5670 -0.3522 19 7 2.3953 12.8598 1.2636 20 6 2.5565 14.2207 1.2230 21 1 3.2530 14.6614 0.5251 22 6 1.8244 15.0328 2.0805 23 7 0.9773 14.4966 2.9300 24 14 2.0435 16.8871 2.0247 25 1 3.0485 17.2359 0.9885 26 1 0.7463 17.5291 1.6926 27 1 2.5104 17.3705 3.3489 28 6 4.9001 7.7391 -1.0240 29 6 2.2894 2.1321 -1.0933 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.1724 1.8154 2.1221 36 1 3.5510 5.7108 0.0697 37 1 2.9742 8.5703 -2.6064 38 1 1.8911 7.6139 -1.5048 39 1 4.7686 10.2178 -0.3735 40 1 1.8907 10.3264 0.2540 41 1 3.1852 10.2094 1.4702 42 1 1.7700 12.4640 1.8907 43 1 0.4666 15.0635 3.5288 44 1 5.4872 7.2674 -0.2361 45 1 5.5090 8.3251 -1.7124 46 1 2.1877 1.8275 -2.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661496212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:54 Heat of formation + Delta-G solvation = 11.816736 kcal Electronic energy + Delta-G solvation = -27223.626900 eV Core-core repulsion = 23149.978329 eV Total energy + Delta-G solvation = -4073.648571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60105 -40.10654 -38.49634 -37.84014 -35.55085 -34.46318 -33.73706 -32.32804 -31.14637 -30.85306 -29.97802 -26.88240 -25.67817 -25.03905 -24.26509 -23.58251 -22.44314 -21.38526 -20.51387 -19.40932 -19.02894 -18.28847 -17.82438 -16.70647 -16.35182 -15.99481 -15.92933 -15.30592 -15.19559 -14.91885 -14.72663 -14.50823 -14.37342 -14.22270 -14.17463 -13.88226 -13.58208 -13.29015 -13.20527 -12.81869 -12.44069 -12.32470 -12.09016 -11.92975 -11.83452 -11.53512 -11.28750 -11.02259 -10.70220 -10.49194 -10.40885 -10.30850 -10.24650 -10.17998 -10.17575 -9.47848 -9.18061 -8.91723 -8.37795 -7.99657 -7.90950 -6.37721 -3.78331 1.25427 2.05624 2.12434 3.09733 3.19520 3.29715 3.35218 3.37386 3.93396 3.96319 4.04712 4.16531 4.22122 4.28299 4.45374 4.48381 4.52832 4.60210 4.76511 4.88695 4.93741 4.96633 5.09316 5.11399 5.26884 5.32589 5.35763 5.54540 5.60968 5.74385 5.82386 5.87796 5.99452 6.00989 6.04865 6.15369 6.20450 6.33359 6.53215 6.60326 7.27254 7.35970 7.57196 7.59362 7.75194 8.11242 8.14991 8.66020 9.22299 9.59285 10.10907 10.80199 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.001681 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.641866 B =16652.385989 C =17630.855380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.187 3.813 5 N -0.463 5.463 6 C -0.064 4.064 7 C 0.607 3.393 8 O -0.546 6.546 9 N -0.697 5.697 10 C 0.119 3.881 11 H 0.105 0.895 12 C -0.135 4.135 13 C 0.059 3.941 14 H 0.070 0.930 15 N -0.655 5.655 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.148 4.148 29 C 0.035 3.965 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.211 0.789 36 H 0.408 0.592 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.350 0.650 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.270 0.730 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -33.530 -2.133 33.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.097 4.097 5 N -0.182 5.182 6 C -0.193 4.193 7 C 0.393 3.607 8 O -0.423 6.423 9 N -0.347 5.347 10 C 0.013 3.987 11 H 0.123 0.877 12 C -0.175 4.175 13 C -0.052 4.052 14 H 0.088 0.912 15 N -0.287 5.287 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.186 4.186 29 C -0.104 4.104 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.244 0.756 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.170 0.830 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.393 -32.507 -3.385 32.685 hybrid contribution -0.312 -0.217 1.463 1.512 sum 0.081 -32.725 -1.922 32.781 Atomic orbital electron populations 1.22188 0.93619 1.03551 1.03643 1.21985 0.96006 0.79196 1.05190 1.45566 1.48284 1.13280 1.06833 1.25182 1.03377 0.87477 0.93669 1.70612 1.17909 1.19307 1.10335 1.20566 1.12626 0.95500 0.90564 1.16870 0.76326 0.81174 0.86328 1.90797 1.55078 1.83035 1.13418 1.45481 1.66401 1.12202 1.10636 1.21781 0.96473 0.84851 0.95623 0.87658 1.23545 0.98214 0.95948 0.99765 1.23105 0.96658 0.88011 0.97376 0.91212 1.60225 1.12200 1.04996 1.51315 1.21734 0.98659 0.94367 0.93550 1.19851 0.85218 0.87676 0.84543 1.90520 1.39783 1.75450 1.40973 1.41877 1.37698 1.06853 1.33764 1.19766 1.22661 0.81150 1.19203 0.87863 1.25262 0.96102 1.00713 0.95948 1.69623 1.26017 1.36381 1.22385 0.85798 0.78195 0.82222 0.78114 1.19211 1.20773 1.20817 1.23602 0.96760 0.97360 1.00899 1.22595 1.02686 0.91800 0.93295 0.91567 0.90202 0.91519 0.88328 0.88612 0.77262 0.75617 0.88099 0.91547 0.82955 0.89675 0.93911 0.77476 0.91975 0.91026 0.87768 0.79579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.30 10.24 37.16 0.38 0.08 16 2 C 0.10 0.17 6.84 -4.04 -0.03 0.14 16 3 N -0.46 -2.56 2.73 -118.36 -0.32 -2.88 16 4 C 0.19 1.25 12.55 -89.90 -1.13 0.12 16 5 N -0.46 -4.72 11.01 -11.03 -0.12 -4.85 16 6 C -0.06 -0.70 6.98 -83.09 -0.58 -1.28 16 7 C 0.61 7.85 7.81 -12.57 -0.10 7.76 16 8 O -0.55 -8.46 16.48 5.26 0.09 -8.38 16 9 N -0.70 -8.06 5.26 -54.12 -0.28 -8.34 16 10 C 0.12 1.39 4.32 -67.12 -0.29 1.09 16 11 H 0.11 1.31 7.46 -51.93 -0.39 0.92 16 12 C -0.14 -1.74 7.68 -25.92 -0.20 -1.94 16 13 C 0.06 0.77 4.02 -66.90 -0.27 0.50 16 14 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 15 N -0.65 -10.88 6.18 -107.13 -0.66 -11.55 16 16 C 0.05 0.91 6.01 -4.98 -0.03 0.88 16 17 C 0.44 10.72 7.82 -10.99 -0.09 10.64 16 18 O -0.58 -16.20 15.78 5.55 0.09 -16.11 16 19 N -0.57 -14.69 5.29 -10.96 -0.06 -14.75 16 20 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.15 -1.61 7.40 -25.92 -0.19 -1.80 16 29 C 0.04 0.29 11.26 -16.64 -0.19 0.10 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.21 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.41 4.35 8.41 -40.82 -0.34 4.00 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.35 5.92 8.25 -39.29 -0.32 5.60 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -36.12 395.77 -9.35 -45.47 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -6.79 Total: 15.18 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.95 Total: 8.12 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.72 Total: -66.62 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.17 Total: -24.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.12 -9.35 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661496212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.287 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds