Wall clock time and date at job start Tue Mar 31 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35855 * 126.13594 * 90.02742 * 3 2 1 5 5 N 1.30170 * 109.00459 * 179.97438 * 4 3 2 6 6 C 1.35752 * 108.86728 * 0.02562 * 5 4 3 7 7 C 1.47321 * 126.23568 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00394 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00013 * 359.96785 * 7 6 5 10 10 C 1.46498 * 120.00012 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.85141 * 336.19293 * 10 9 7 12 12 C 1.53777 * 113.61414 * 107.50536 * 10 9 7 13 13 C 1.53781 * 87.07979 * 89.11486 * 12 10 9 14 14 H 1.08996 * 113.61679 * 270.88014 * 13 12 10 15 15 N 1.46904 * 113.61226 * 139.98327 * 13 12 10 16 16 C 1.46896 * 111.00341 * 107.50260 * 15 13 12 17 17 C 1.50700 * 109.47421 * 179.97438 * 16 15 13 18 18 O 1.21293 * 119.99910 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99604 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00554 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99489 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99739 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47173 * 119.99771 * 24 22 20 27 27 H 1.48502 * 109.46998 * 240.00087 * 24 22 20 28 28 C 1.53780 * 87.08192 * 25.43556 * 13 12 10 29 29 C 1.35375 * 126.13548 * 269.71620 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 35 35 H 1.08000 * 125.49350 * 359.97438 * 4 3 2 36 36 H 0.97003 * 119.99761 * 0.02562 * 9 7 6 37 37 H 1.09004 * 113.61163 * 203.66312 * 12 10 9 38 38 H 1.08995 * 113.61772 * 334.56504 * 12 10 9 39 39 H 1.00903 * 110.99908 * 231.45871 * 15 13 12 40 40 H 1.09000 * 109.46737 * 299.99543 * 16 15 13 41 41 H 1.09002 * 109.47244 * 59.99857 * 16 15 13 42 42 H 0.96993 * 120.00425 * 0.02562 * 19 17 16 43 43 H 0.97002 * 120.00034 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.60685 * 220.02095 * 28 13 12 45 45 H 1.08995 * 113.69384 * 89.12809 * 28 13 12 46 46 H 1.07992 * 126.56831 * 359.96918 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1364 1.0972 5 7 2.7007 3.3091 0.7138 6 6 2.7136 3.3481 -0.6431 7 6 3.1188 4.4926 -1.4776 8 8 3.0867 4.4029 -2.6901 9 7 3.5251 5.6393 -0.8973 10 6 3.9275 6.7776 -1.7271 11 1 4.2519 6.4807 -2.7245 12 6 2.9103 7.9308 -1.7259 13 6 3.6610 8.4873 -0.5046 14 1 3.2888 8.1079 0.4469 15 7 3.8071 9.9490 -0.5195 16 6 2.9281 10.5762 0.4764 17 6 3.1057 12.0720 0.4322 18 8 3.8872 12.5670 -0.3522 19 7 2.3953 12.8598 1.2636 20 6 2.5565 14.2207 1.2230 21 1 3.2530 14.6614 0.5251 22 6 1.8244 15.0328 2.0805 23 7 0.9773 14.4966 2.9300 24 14 2.0435 16.8871 2.0247 25 1 3.0485 17.2359 0.9885 26 1 0.7463 17.5291 1.6926 27 1 2.5104 17.3705 3.3489 28 6 4.9001 7.7391 -1.0240 29 6 2.2894 2.1321 -1.0933 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.1724 1.8154 2.1221 36 1 3.5510 5.7108 0.0697 37 1 2.9742 8.5703 -2.6064 38 1 1.8911 7.6139 -1.5048 39 1 4.7686 10.2178 -0.3735 40 1 1.8907 10.3264 0.2540 41 1 3.1852 10.2094 1.4702 42 1 1.7700 12.4640 1.8907 43 1 0.4666 15.0635 3.5288 44 1 5.4872 7.2674 -0.2361 45 1 5.5090 8.3251 -1.7124 46 1 2.1877 1.8275 -2.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661496212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:53 Heat of formation + Delta-G solvation = -15.050064 kcal Electronic energy + Delta-G solvation = -27224.791932 eV Core-core repulsion = 23149.978329 eV Total energy + Delta-G solvation = -4074.813603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.15748 -41.11524 -40.11496 -39.18465 -36.13203 -35.94047 -35.36469 -33.51351 -33.16897 -31.26891 -30.58313 -28.48965 -26.69558 -26.30988 -25.28384 -24.29738 -23.47967 -21.86010 -21.36439 -21.07370 -20.26391 -19.88640 -18.86782 -17.92226 -17.30805 -17.05046 -16.86643 -16.57258 -16.43395 -16.15645 -15.76529 -15.68733 -15.40707 -15.29315 -14.97314 -14.90375 -14.64037 -14.56430 -14.12630 -13.57659 -13.52091 -13.36667 -13.27218 -13.09299 -12.96514 -12.87986 -12.55682 -12.39733 -12.21379 -12.10702 -11.54835 -11.50455 -11.49762 -11.34847 -11.07850 -10.75888 -10.33342 -10.10618 -10.01513 -9.60407 -9.30884 -8.46655 -5.95566 0.55784 1.37062 1.42150 1.44185 1.56801 1.69727 2.05055 2.25732 2.29712 2.51774 2.95970 3.20588 3.41967 3.49024 3.56244 3.66653 3.78137 3.90707 3.97970 4.10826 4.13248 4.16522 4.30822 4.42276 4.43609 4.47250 4.58131 4.58944 4.70882 4.84739 4.85888 4.87726 5.00584 5.08424 5.13153 5.14557 5.24195 5.41303 5.44094 5.57146 5.93502 6.11830 6.16028 6.44396 6.48722 6.60163 6.86838 7.12585 7.23018 7.56110 8.11342 8.71062 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.001681 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.641866 B =16652.385989 C =17630.855380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.195 3.805 5 N -0.497 5.497 6 C -0.101 4.101 7 C 0.601 3.399 8 O -0.582 6.582 9 N -0.691 5.691 10 C 0.124 3.876 11 H 0.097 0.903 12 C -0.136 4.136 13 C 0.060 3.940 14 H 0.083 0.917 15 N -0.668 5.668 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.270 1.270 28 C -0.132 4.132 29 C 0.042 3.958 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.248 0.752 36 H 0.414 0.586 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.348 0.652 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -35.482 -0.657 35.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.130 5.130 4 C -0.089 4.089 5 N -0.216 5.216 6 C -0.229 4.229 7 C 0.390 3.610 8 O -0.463 6.463 9 N -0.340 5.340 10 C 0.018 3.982 11 H 0.115 0.885 12 C -0.176 4.176 13 C -0.049 4.049 14 H 0.101 0.899 15 N -0.301 5.301 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.170 4.170 29 C -0.100 4.100 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.264 0.736 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.125 0.875 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.070 -34.502 -1.870 34.553 hybrid contribution -0.266 0.257 1.017 1.082 sum -0.195 -34.245 -0.854 34.256 Atomic orbital electron populations 1.22170 0.93642 1.04420 1.02468 1.22340 0.95864 0.77163 1.07282 1.45814 1.47067 1.14370 1.05720 1.25920 1.01233 0.86554 0.95201 1.70537 1.19704 1.21445 1.09907 1.20445 1.15344 0.95887 0.91198 1.17249 0.75706 0.81886 0.86190 1.90760 1.56839 1.83765 1.14897 1.45429 1.65949 1.11837 1.10801 1.21651 0.96236 0.84704 0.95581 0.88522 1.23514 0.98231 0.96389 0.99449 1.23183 0.97999 0.85892 0.97861 0.89942 1.60201 1.11775 1.07115 1.50959 1.21587 0.99812 0.89900 0.95492 1.20882 0.83604 0.90044 0.82921 1.90487 1.41195 1.76937 1.42273 1.41944 1.38284 1.06423 1.34430 1.19730 1.23753 0.82748 1.20192 0.90287 1.26063 0.95270 1.04961 0.95032 1.69681 1.26036 1.38046 1.22430 0.84847 0.78285 0.76720 0.78324 1.19786 1.19647 1.19477 1.23508 0.96052 0.96383 1.01059 1.22782 1.01415 0.91337 0.94460 0.93278 0.88322 0.92120 0.85572 0.87284 0.73621 0.74971 0.89154 0.92164 0.83215 0.88463 0.91392 0.77004 0.91290 0.89287 0.87526 0.78606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.24 71.98 0.74 0.51 16 2 C 0.09 0.04 6.84 86.38 0.59 0.63 16 3 N -0.45 -4.09 2.73 -528.38 -1.44 -5.53 16 4 C 0.20 2.17 12.55 180.10 2.26 4.43 16 5 N -0.50 -9.65 11.01 -188.81 -2.08 -11.73 16 6 C -0.10 -2.21 6.98 40.51 0.28 -1.92 16 7 C 0.60 15.89 7.81 86.63 0.68 16.56 16 8 O -0.58 -18.67 16.48 -4.11 -0.07 -18.74 16 9 N -0.69 -15.88 5.26 -443.39 -2.33 -18.21 16 10 C 0.12 2.89 4.32 45.52 0.20 3.08 16 11 H 0.10 2.46 7.46 -2.39 -0.02 2.44 16 12 C -0.14 -3.50 7.68 31.12 0.24 -3.26 16 13 C 0.06 1.50 4.02 45.44 0.18 1.68 16 14 H 0.08 1.88 7.87 -2.39 -0.02 1.86 16 15 N -0.67 -21.74 6.18 -492.86 -3.05 -24.78 16 16 C 0.06 2.31 6.01 85.56 0.51 2.83 16 17 C 0.44 21.48 7.82 87.66 0.69 22.17 16 18 O -0.62 -35.38 15.78 -3.07 -0.05 -35.42 16 19 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 20 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 24 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C -0.13 -2.71 7.40 31.12 0.23 -2.48 16 29 C 0.04 0.65 11.26 83.72 0.94 1.59 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.25 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.41 8.56 8.41 -92.71 -0.78 7.78 16 37 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.35 11.59 8.25 -89.69 -0.74 10.85 16 40 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 42 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 43 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -80.00 395.77 -0.73 -80.72 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -1.22 Total: 43.17 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 8.82 Total: 26.92 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -10.24 Total: -142.33 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.12 Total: -54.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -80.00 -0.73 -80.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661496212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.672 kcal (2) G-P(sol) polarization free energy of solvation -79.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds