Wall clock time and date at job start Tue Mar 31 2020 18:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 N 1.31792 * 119.12442 * 269.73253 * 10 9 8 12 12 C 1.32335 * 120.81791 * 179.75656 * 11 10 9 13 13 C 1.38599 * 119.10316 * 0.50471 * 12 11 10 14 14 C 1.38594 * 118.39904 * 359.75057 * 13 12 11 15 15 N 1.31792 * 119.12119 * 89.99799 * 10 9 8 16 16 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 17 17 C 1.46901 * 111.00002 * 274.99677 * 16 2 1 18 18 C 1.50699 * 109.47447 * 179.97438 * 17 16 2 19 19 O 1.21296 * 119.99473 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00376 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00436 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99808 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00419 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00302 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99776 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47077 * 90.00615 * 25 23 21 27 27 H 1.48497 * 109.46995 * 210.00247 * 25 23 21 28 28 H 1.48503 * 109.47275 * 330.00262 * 25 23 21 29 29 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 32 32 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 33 33 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 36 36 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 37 37 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 38 38 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 39 39 H 1.08006 * 120.44787 * 180.23315 * 12 11 10 40 40 H 1.07998 * 120.80007 * 179.76990 * 13 12 11 41 41 H 1.07999 * 120.44927 * 180.02562 * 14 13 12 42 42 H 1.00897 * 111.00541 * 151.04270 * 16 2 1 43 43 H 1.09001 * 109.47268 * 300.00240 * 17 16 2 44 44 H 1.08998 * 109.47179 * 59.99719 * 17 16 2 45 45 H 0.97005 * 120.00056 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00103 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.6886 -2.3454 -3.3310 11 7 8.4175 -1.3801 -3.8542 12 6 9.7393 -1.4332 -3.8185 13 6 10.3544 -2.5272 -3.2304 14 6 9.5543 -3.5247 -2.6957 15 7 8.2386 -3.4003 -2.7639 16 7 2.0196 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5220 3.5559 19 8 2.8677 -1.6990 3.4700 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8322 22 1 3.4370 -1.6051 5.7560 23 6 3.3330 0.1050 7.0453 24 7 3.7733 -0.5442 8.0997 25 14 2.9019 1.9178 7.1774 26 1 1.4725 2.0605 7.5538 27 1 3.7528 2.5546 8.2145 28 1 3.1377 2.5793 5.8689 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 3.9824 -0.4622 -0.4320 35 1 6.1067 -0.5264 -2.0889 36 1 5.9679 -2.0904 -1.2506 37 1 5.7551 -3.2433 -3.4353 38 1 5.8940 -1.6796 -4.2741 39 1 10.3308 -0.6370 -4.2458 40 1 11.4311 -2.6005 -3.1896 41 1 9.9987 -4.3915 -2.2294 42 1 2.9172 -1.1206 1.0286 43 1 2.7589 1.0461 2.1182 44 1 1.0872 0.6162 2.5525 45 1 2.5045 1.0615 4.8010 46 1 3.8747 -0.0819 8.9464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662368469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:01 Heat of formation + Delta-G solvation = -21.662901 kcal Electronic energy + Delta-G solvation = -27434.319407 eV Core-core repulsion = 23359.219050 eV Total energy + Delta-G solvation = -4075.100357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40292 -39.97829 -38.62868 -37.14339 -34.58144 -34.19847 -34.06776 -33.80051 -31.74566 -31.43703 -30.80905 -27.29163 -26.61599 -25.16084 -24.91921 -23.76940 -22.47804 -20.75019 -20.45274 -19.44596 -18.45399 -17.92079 -17.73018 -17.06328 -16.40794 -16.22346 -15.81383 -15.60348 -15.44200 -15.27348 -15.04652 -14.77454 -14.16448 -14.00561 -13.83662 -13.57835 -13.30711 -13.19846 -12.86382 -12.69735 -12.49696 -12.42035 -12.22176 -12.06158 -11.84336 -11.59815 -11.42459 -11.24036 -11.21842 -11.18541 -10.95882 -10.63038 -10.13238 -10.00931 -9.83963 -9.61065 -9.59933 -9.25545 -8.63912 -8.27237 -8.20828 -6.34395 -3.86066 0.48354 0.70947 2.48596 2.89709 2.98722 3.03913 3.12186 3.39153 3.57998 3.69000 3.79143 3.97488 4.07105 4.21031 4.45918 4.58453 4.64215 4.69675 4.73236 4.79832 4.83087 5.03971 5.08549 5.17571 5.19114 5.29288 5.32257 5.47366 5.52102 5.64367 5.68062 5.70068 5.74417 5.79356 5.87558 5.90209 6.02957 6.15375 6.29350 6.61974 7.00274 7.24762 7.45542 7.54397 7.73183 8.02688 8.10817 8.55871 8.91445 9.38637 9.78385 10.78649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.002273 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.278908 B =12314.063246 C =14471.860426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.521 3.479 7 O -0.539 6.539 8 C -0.134 4.134 9 C -0.035 4.035 10 C 0.321 3.679 11 N -0.516 5.516 12 C 0.148 3.852 13 C -0.235 4.235 14 C 0.151 3.849 15 N -0.513 5.513 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.168 0.832 40 H 0.148 0.852 41 H 0.170 0.830 42 H 0.349 0.651 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 3.974 -23.568 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.385 5.385 6 C 0.308 3.692 7 O -0.416 6.416 8 C -0.175 4.175 9 C -0.075 4.075 10 C 0.054 3.946 11 N -0.230 5.230 12 C -0.018 4.018 13 C -0.257 4.257 14 C -0.015 4.015 15 N -0.227 5.227 16 N -0.299 5.299 17 C -0.086 4.086 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.235 0.765 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.186 0.814 40 H 0.166 0.834 41 H 0.187 0.813 42 H 0.170 0.830 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.176 2.644 -23.956 24.880 hybrid contribution 1.879 2.186 0.710 2.969 sum 8.055 4.830 -23.246 25.072 Atomic orbital electron populations 1.21740 0.93323 1.03085 1.01528 1.21819 0.97187 0.95882 0.89003 0.93347 1.21612 0.79298 1.02135 0.97527 1.46053 1.08160 1.60497 1.23779 1.20429 0.89671 0.77122 0.81988 1.90712 1.70416 1.47242 1.33260 1.21565 0.92378 1.03341 1.00242 1.20116 0.84812 1.03716 0.98840 1.23233 0.97788 0.85046 0.88539 1.68296 1.07365 1.28950 1.18431 1.23279 0.90590 0.96185 0.91700 1.22944 1.03106 0.97196 1.02453 1.23321 0.88956 0.97505 0.91726 1.68322 1.13291 1.24427 1.16634 1.60105 1.34980 1.32142 1.02705 1.21793 1.01552 0.93897 0.91387 1.19693 0.84688 0.88246 0.84015 1.90579 1.53794 1.15809 1.84346 1.42206 1.60078 1.11022 1.09604 1.19431 1.40334 0.97945 0.85718 0.86265 1.25045 0.97452 0.98429 0.95234 1.69620 1.44992 1.36599 1.00814 0.86669 0.79369 0.84886 0.78422 1.19564 1.20185 1.19561 0.92427 0.91391 0.92053 0.90743 0.90171 0.76549 0.88483 0.88037 0.88134 0.88319 0.81439 0.83419 0.81305 0.82964 0.93747 0.89248 0.79702 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.41 37.16 0.35 -1.04 16 2 C 0.07 0.77 2.81 -67.72 -0.19 0.58 16 3 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 4 C 0.12 1.26 5.31 -4.04 -0.02 1.24 16 5 N -0.73 -7.63 4.99 -60.29 -0.30 -7.93 16 6 C 0.52 6.03 7.83 -10.99 -0.09 5.94 16 7 O -0.54 -7.96 15.98 5.55 0.09 -7.87 16 8 C -0.13 -1.27 5.68 -27.88 -0.16 -1.42 16 9 C -0.04 -0.36 4.94 -27.88 -0.14 -0.50 16 10 C 0.32 3.39 6.90 -157.20 -1.08 2.30 16 11 N -0.52 -5.14 10.33 -10.72 -0.11 -5.25 16 12 C 0.15 1.05 11.30 -17.20 -0.19 0.85 16 13 C -0.24 -1.38 10.17 -39.32 -0.40 -1.78 16 14 C 0.15 1.14 11.30 -17.20 -0.19 0.95 16 15 N -0.51 -5.41 10.33 -10.73 -0.11 -5.52 16 16 N -0.66 -9.60 5.92 -107.99 -0.64 -10.24 16 17 C 0.05 0.72 5.96 -4.98 -0.03 0.69 16 18 C 0.45 9.86 7.82 -10.99 -0.09 9.77 16 19 O -0.56 -14.83 15.78 5.54 0.09 -14.75 16 20 N -0.59 -13.71 5.09 -10.96 -0.06 -13.76 16 21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 25 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.69 7.37 -40.82 -0.30 3.39 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.17 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.35 5.21 6.41 -39.29 -0.25 4.96 16 43 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 44 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 45 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -36.30 391.18 -8.15 -44.46 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.59 Total: 15.43 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -2.48 Total: 9.94 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -0.44 Total: -67.42 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.30 -8.15 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662368469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.795 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds