Wall clock time and date at job start Tue Mar 31 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 N 1.31792 * 119.12442 * 269.73253 * 10 9 8 12 12 C 1.32335 * 120.81791 * 179.75656 * 11 10 9 13 13 C 1.38599 * 119.10316 * 0.50471 * 12 11 10 14 14 C 1.38594 * 118.39904 * 359.75057 * 13 12 11 15 15 N 1.31792 * 119.12119 * 89.99799 * 10 9 8 16 16 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 17 17 C 1.46901 * 111.00002 * 274.99677 * 16 2 1 18 18 C 1.50699 * 109.47447 * 179.97438 * 17 16 2 19 19 O 1.21296 * 119.99473 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00376 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00436 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99808 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00419 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00302 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99776 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47077 * 90.00615 * 25 23 21 27 27 H 1.48497 * 109.46995 * 210.00247 * 25 23 21 28 28 H 1.48503 * 109.47275 * 330.00262 * 25 23 21 29 29 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 32 32 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 33 33 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 36 36 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 37 37 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 38 38 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 39 39 H 1.08006 * 120.44787 * 180.23315 * 12 11 10 40 40 H 1.07998 * 120.80007 * 179.76990 * 13 12 11 41 41 H 1.07999 * 120.44927 * 180.02562 * 14 13 12 42 42 H 1.00897 * 111.00541 * 151.04270 * 16 2 1 43 43 H 1.09001 * 109.47268 * 300.00240 * 17 16 2 44 44 H 1.08998 * 109.47179 * 59.99719 * 17 16 2 45 45 H 0.97005 * 120.00056 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00103 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.6886 -2.3454 -3.3310 11 7 8.4175 -1.3801 -3.8542 12 6 9.7393 -1.4332 -3.8185 13 6 10.3544 -2.5272 -3.2304 14 6 9.5543 -3.5247 -2.6957 15 7 8.2386 -3.4003 -2.7639 16 7 2.0196 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5220 3.5559 19 8 2.8677 -1.6990 3.4700 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8322 22 1 3.4370 -1.6051 5.7560 23 6 3.3330 0.1050 7.0453 24 7 3.7733 -0.5442 8.0997 25 14 2.9019 1.9178 7.1774 26 1 1.4725 2.0605 7.5538 27 1 3.7528 2.5546 8.2145 28 1 3.1377 2.5793 5.8689 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 3.9824 -0.4622 -0.4320 35 1 6.1067 -0.5264 -2.0889 36 1 5.9679 -2.0904 -1.2506 37 1 5.7551 -3.2433 -3.4353 38 1 5.8940 -1.6796 -4.2741 39 1 10.3308 -0.6370 -4.2458 40 1 11.4311 -2.6005 -3.1896 41 1 9.9987 -4.3915 -2.2294 42 1 2.9172 -1.1206 1.0286 43 1 2.7589 1.0461 2.1182 44 1 1.0872 0.6162 2.5525 45 1 2.5045 1.0615 4.8010 46 1 3.8747 -0.0819 8.9464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662368469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:00 Heat of formation + Delta-G solvation = -51.781352 kcal Electronic energy + Delta-G solvation = -27435.625441 eV Core-core repulsion = 23359.219050 eV Total energy + Delta-G solvation = -4076.406391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01943 -40.93203 -40.28640 -38.27615 -36.02478 -35.29160 -34.98035 -34.69089 -33.74680 -32.34379 -31.65942 -28.31083 -27.93450 -26.08982 -25.48428 -25.33495 -23.17211 -21.67066 -21.38014 -21.24829 -20.30095 -18.60648 -18.55657 -17.95784 -17.48345 -17.16894 -16.97337 -16.83668 -16.57900 -16.18133 -16.05135 -15.84068 -15.54188 -15.05147 -14.81845 -14.67158 -14.44816 -14.30444 -14.18596 -13.93472 -13.62439 -13.46353 -13.30865 -13.19841 -12.95696 -12.79251 -12.54456 -12.40652 -12.21959 -11.97192 -11.87033 -11.85690 -11.81303 -11.50935 -11.04056 -10.45349 -10.43398 -10.24617 -10.22934 -10.16632 -9.36946 -8.40841 -6.01952 -0.10173 0.14890 1.30454 1.36681 1.45273 1.56222 1.95917 2.06849 2.23642 2.69056 2.77374 2.93105 3.15608 3.23709 3.36027 3.66138 3.74023 3.76740 4.02668 4.06986 4.11356 4.18880 4.21883 4.22395 4.36686 4.42948 4.46145 4.57091 4.59839 4.64448 4.73825 4.85338 4.94706 4.98685 4.99174 5.06938 5.30982 5.45771 5.48026 5.53391 5.90583 6.04014 6.05717 6.33755 6.39009 6.59996 6.88716 7.10838 7.13455 7.40275 7.97129 8.76834 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.002273 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.278908 B =12314.063246 C =14471.860426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.075 0.925 4 C 0.121 3.879 5 N -0.725 5.725 6 C 0.520 3.480 7 O -0.575 6.575 8 C -0.123 4.123 9 C -0.030 4.030 10 C 0.303 3.697 11 N -0.537 5.537 12 C 0.137 3.863 13 C -0.219 4.219 14 C 0.133 3.867 15 N -0.544 5.544 16 N -0.686 5.686 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.228 1.228 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.194 0.806 42 H 0.343 0.657 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.391 7.782 -24.817 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.377 5.377 6 C 0.308 3.692 7 O -0.455 6.455 8 C -0.164 4.164 9 C -0.070 4.070 10 C 0.035 3.965 11 N -0.252 5.252 12 C -0.028 4.028 13 C -0.240 4.240 14 C -0.031 4.031 15 N -0.259 5.259 16 N -0.321 5.321 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.458 4.458 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.217 0.783 40 H 0.203 0.797 41 H 0.211 0.789 42 H 0.164 0.836 43 H 0.101 0.899 44 H 0.133 0.867 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.597 6.474 -25.220 26.860 hybrid contribution 1.838 0.836 1.050 2.276 sum 8.435 7.310 -24.169 26.622 Atomic orbital electron populations 1.21762 0.92634 1.02453 1.02797 1.21863 0.97538 0.96577 0.87009 0.90755 1.21583 0.79227 1.01279 0.98200 1.46017 1.08228 1.59885 1.23614 1.20762 0.90429 0.76440 0.81565 1.90694 1.71228 1.48842 1.34737 1.21492 0.90832 1.04153 0.99919 1.19981 0.85360 1.02734 0.98878 1.23123 0.97769 0.85775 0.89822 1.68281 1.08917 1.29050 1.18959 1.23929 0.89896 0.97479 0.91495 1.23332 1.04782 0.95694 1.00179 1.23880 0.88286 0.98977 0.91990 1.68283 1.15125 1.24848 1.17635 1.60103 1.34952 1.33102 1.03954 1.21726 1.03331 0.93745 0.88330 1.21020 0.82299 0.87932 0.85246 1.90561 1.55335 1.18623 1.85406 1.42023 1.60546 1.11789 1.08821 1.18995 1.42411 0.95997 0.88348 0.92790 1.26139 0.96402 1.05096 0.93844 1.69809 1.46334 1.39652 1.01799 0.85358 0.79333 0.76427 0.80342 1.18287 1.20161 1.15114 0.90049 0.93050 0.91863 0.89539 0.92248 0.75639 0.86823 0.88040 0.89719 0.88893 0.78285 0.79702 0.78924 0.83645 0.89858 0.86683 0.77418 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.41 71.98 0.68 -1.71 16 2 C 0.08 1.48 2.81 44.92 0.13 1.60 16 3 H 0.07 1.07 7.80 -2.39 -0.02 1.06 16 4 C 0.12 2.42 5.31 86.38 0.46 2.87 16 5 N -0.72 -14.43 4.99 -463.05 -2.31 -16.74 16 6 C 0.52 12.09 7.83 87.66 0.69 12.77 16 7 O -0.58 -17.42 15.98 -3.04 -0.05 -17.47 16 8 C -0.12 -2.35 5.68 29.85 0.17 -2.18 16 9 C -0.03 -0.64 4.94 29.85 0.15 -0.49 16 10 C 0.30 6.51 6.90 138.75 0.96 7.46 16 11 N -0.54 -10.39 10.33 -187.84 -1.94 -12.33 16 12 C 0.14 1.67 11.30 84.70 0.96 2.63 16 13 C -0.22 -2.05 10.17 22.44 0.23 -1.83 16 14 C 0.13 1.87 11.30 84.70 0.96 2.83 16 15 N -0.54 -11.64 10.33 -187.85 -1.94 -13.58 16 16 N -0.69 -18.52 5.92 -495.59 -2.94 -21.46 16 17 C 0.06 1.69 5.96 85.56 0.51 2.20 16 18 C 0.45 19.40 7.82 87.66 0.69 20.09 16 19 O -0.61 -33.44 15.78 -3.08 -0.05 -33.49 16 20 N -0.59 -26.93 5.09 -306.99 -1.56 -28.49 16 21 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 24 N -0.94 -56.00 13.96 21.66 0.30 -55.70 16 25 Si 0.97 37.83 27.74 68.60 1.90 39.73 16 26 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 29 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.08 7.45 -2.38 -0.02 1.06 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 6.91 7.37 -92.71 -0.68 6.22 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.09 2.02 8.10 -2.38 -0.02 2.00 16 39 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 41 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.34 9.93 6.41 -89.70 -0.58 9.35 16 43 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 44 H 0.12 2.69 7.44 -2.39 -0.02 2.68 16 45 H 0.39 14.52 5.76 -92.70 -0.53 13.98 16 46 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -86.44 391.18 -1.52 -87.97 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.82 Total: 43.83 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 7.88 Total: 27.73 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -10.39 Total: -148.30 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.10 Total: -50.96 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -86.44 -1.52 -87.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662368469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.185 kcal (2) G-P(sol) polarization free energy of solvation -86.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds