Wall clock time and date at job start Tue Mar 31 2020 18:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.53934 * 113.73518 * 271.72366 * 12 11 10 14 14 N 1.47960 * 86.18071 * 221.92286 * 13 12 11 15 15 C 1.46904 * 110.99901 * 137.58776 * 14 13 12 16 16 C 1.50691 * 109.47622 * 70.63380 * 15 14 13 17 17 O 1.21294 * 120.00250 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00112 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99904 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99941 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00143 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47073 * 59.99821 * 23 21 19 25 25 H 1.48508 * 109.47210 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47462 * 299.99565 * 23 21 19 27 27 C 1.47954 * 90.76415 * 24.68909 * 14 13 12 28 28 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 29 29 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 30 30 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 32 32 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 33 33 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 34 34 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 35 35 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 36 36 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 37 37 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 38 38 H 1.09001 * 112.93862 * 43.42978 * 12 11 10 39 39 H 1.09005 * 113.75657 * 336.23705 * 13 12 11 40 40 H 1.08994 * 113.76010 * 107.60189 * 13 12 11 41 41 H 1.08999 * 109.46942 * 190.64077 * 15 14 13 42 42 H 1.09003 * 109.46701 * 310.62884 * 15 14 13 43 43 H 0.96999 * 119.99545 * 359.97438 * 18 16 15 44 44 H 0.97000 * 120.00605 * 180.02562 * 22 21 19 45 45 H 1.09008 * 113.75768 * 220.99200 * 27 14 13 46 46 H 1.08998 * 113.76033 * 89.63167 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.4068 2.9956 5.7899 13 6 4.9419 2.9611 5.8993 14 7 4.7456 3.2056 7.3453 15 6 5.6476 2.3688 8.1479 16 6 7.0629 2.8618 7.9908 17 8 7.2973 3.8167 7.2806 18 7 8.0684 2.2417 8.6396 19 6 9.3559 2.6906 8.4972 20 1 9.5645 3.5408 7.8648 21 6 10.3927 2.0510 9.1656 22 7 10.1390 1.0161 9.9347 23 14 12.1471 2.6621 8.9709 24 1 12.2352 4.0699 9.4354 25 1 13.0590 1.8158 9.7818 26 1 12.5418 2.5869 7.5414 27 6 3.3906 2.6148 7.2814 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8658 4.0937 -1.4127 34 1 3.1046 4.1733 1.2628 35 1 3.0901 3.3159 3.2976 36 1 1.8236 1.6588 5.2019 37 1 3.4630 1.0288 4.9122 38 1 3.0020 3.9868 5.5858 39 1 5.3764 1.9873 5.6736 40 1 5.4377 3.7804 5.3787 41 1 5.3576 2.4247 9.1971 42 1 5.5830 1.3352 7.8077 43 1 7.8810 1.4783 9.2079 44 1 10.8626 0.5697 10.4017 45 1 2.6470 3.1574 7.8652 46 1 3.3714 1.5397 7.4600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665271580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:38 Heat of formation + Delta-G solvation = 44.177411 kcal Electronic energy + Delta-G solvation = -27908.426795 eV Core-core repulsion = 23836.181488 eV Total energy + Delta-G solvation = -4072.245307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.83972 -40.32979 -39.37151 -37.73816 -35.40787 -34.55478 -33.91034 -31.81419 -31.27053 -30.44998 -30.09761 -27.46868 -26.01973 -25.05785 -24.39283 -23.38491 -22.50171 -21.51337 -20.48799 -19.55771 -19.22035 -18.27371 -17.84611 -16.61677 -16.48928 -16.18538 -16.05895 -15.46779 -15.25502 -15.12761 -14.92128 -14.60551 -14.45068 -14.18791 -14.09117 -13.67946 -13.40665 -13.28507 -12.99726 -12.88031 -12.54390 -12.44860 -12.16039 -11.76340 -11.66329 -11.51330 -11.38614 -11.12329 -11.06487 -10.70913 -10.66134 -10.45653 -10.31028 -10.21908 -9.62638 -9.51070 -9.39512 -9.27656 -8.69082 -8.25505 -7.98165 -6.43176 -3.84175 0.94290 2.03348 2.31493 2.84457 2.92825 3.18792 3.24658 3.28909 3.86485 3.95198 4.15108 4.19143 4.23914 4.38501 4.57472 4.59951 4.68009 4.82938 4.90348 4.90693 5.04708 5.20335 5.21868 5.24356 5.31173 5.35240 5.38995 5.47110 5.49820 5.55241 5.67632 5.70011 5.71442 5.80383 5.96258 6.05941 6.16976 6.23817 6.26601 6.41394 6.58914 7.06954 7.17182 7.53337 7.71009 7.81662 8.03680 8.59489 9.16090 9.52239 10.03827 10.74452 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001964 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.647597 B =14250.886296 C =14893.231003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 N -0.254 5.254 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.188 4.188 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.130 3.870 12 C -0.135 4.135 13 C 0.026 3.974 14 N -0.453 5.453 15 C 0.010 3.990 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.009 3.991 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 -0.866 -15.568 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.217 4.217 7 C -0.168 4.168 8 C 0.376 3.624 9 O -0.419 6.419 10 N -0.360 5.360 11 C 0.007 3.993 12 C -0.154 4.154 13 C -0.103 4.103 14 N -0.175 5.175 15 C -0.122 4.122 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.121 4.121 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.204 0.796 34 H 0.179 0.821 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.993 -1.312 -16.331 25.849 hybrid contribution 1.256 -0.147 0.729 1.460 sum -18.737 -1.459 -15.602 24.426 Atomic orbital electron populations 1.22068 0.93376 1.03546 1.03041 1.22221 0.96320 0.76486 1.05899 1.45870 1.44132 1.12324 1.01867 1.73210 1.18738 1.05190 1.13898 1.23593 1.04034 0.95238 0.95065 1.22302 1.06773 0.96810 0.95802 1.21408 1.11159 0.94346 0.89860 1.16910 0.77999 0.84359 0.83115 1.90786 1.45675 1.21503 1.83936 1.45665 1.64376 1.18265 1.07743 1.21524 1.01818 0.96844 0.79123 1.23362 0.97547 0.99548 0.94950 1.23884 0.93560 1.01971 0.90892 1.68405 1.00546 1.43504 1.05081 1.22464 0.94204 0.95390 1.00144 1.19679 0.85683 0.86536 0.85275 1.90515 1.84080 1.29391 1.42421 1.41869 1.06359 1.29613 1.42222 1.19642 0.82013 1.14117 1.27141 0.87987 1.25268 1.00417 0.96013 0.96268 1.69602 1.33870 1.20781 1.30060 0.85914 0.81275 0.78623 0.78386 1.19867 1.20967 1.19917 1.23966 0.94236 0.99250 0.94607 0.91641 0.91846 0.90049 0.88472 0.86436 0.79606 0.82056 0.75814 0.90706 0.90912 0.87528 0.91437 0.88688 0.89111 0.92799 0.77495 0.91804 0.89023 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.11 0.94 6.58 -4.04 -0.03 0.91 16 3 N -0.25 -2.68 3.35 -57.14 -0.19 -2.87 16 4 N -0.28 -2.99 11.90 30.59 0.36 -2.63 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.59 10.50 -38.98 -0.41 -2.00 16 7 C -0.04 -0.41 6.96 -82.05 -0.57 -0.98 16 8 C 0.59 6.46 7.78 -12.64 -0.10 6.36 16 9 O -0.54 -7.15 14.68 5.25 0.08 -7.07 16 10 N -0.71 -6.30 5.54 -61.47 -0.34 -6.64 16 11 C 0.13 1.21 5.53 -4.04 -0.02 1.18 16 12 C -0.13 -1.33 3.94 -89.69 -0.35 -1.68 16 13 C 0.03 0.36 6.31 -2.77 -0.02 0.34 16 14 N -0.45 -7.09 5.95 -239.74 -1.43 -8.52 16 15 C 0.01 0.17 5.31 -4.98 -0.03 0.15 16 16 C 0.44 10.38 7.59 -10.99 -0.08 10.29 16 17 O -0.58 -15.52 15.13 5.55 0.08 -15.44 16 18 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.09 6.20 -51.93 -0.32 0.77 16 33 H 0.19 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.16 0.90 7.59 -52.49 -0.40 0.50 16 35 H 0.41 2.79 7.51 -40.82 -0.31 2.49 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 40 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -34.51 388.00 -8.33 -42.84 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.68 Total: 10.93 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.70 Total: 5.63 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.93 Total: -58.73 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.16 Total: -22.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.51 -8.33 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665271580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.013 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds