Wall clock time and date at job start Tue Mar 31 2020 18:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.53934 * 113.73518 * 271.72366 * 12 11 10 14 14 N 1.47960 * 86.18071 * 221.92286 * 13 12 11 15 15 C 1.46904 * 110.99901 * 137.58776 * 14 13 12 16 16 C 1.50691 * 109.47622 * 70.63380 * 15 14 13 17 17 O 1.21294 * 120.00250 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00112 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99904 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99941 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00143 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47073 * 59.99821 * 23 21 19 25 25 H 1.48508 * 109.47210 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47462 * 299.99565 * 23 21 19 27 27 C 1.47954 * 90.76415 * 24.68909 * 14 13 12 28 28 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 29 29 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 30 30 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 32 32 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 33 33 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 34 34 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 35 35 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 36 36 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 37 37 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 38 38 H 1.09001 * 112.93862 * 43.42978 * 12 11 10 39 39 H 1.09005 * 113.75657 * 336.23705 * 13 12 11 40 40 H 1.08994 * 113.76010 * 107.60189 * 13 12 11 41 41 H 1.08999 * 109.46942 * 190.64077 * 15 14 13 42 42 H 1.09003 * 109.46701 * 310.62884 * 15 14 13 43 43 H 0.96999 * 119.99545 * 359.97438 * 18 16 15 44 44 H 0.97000 * 120.00605 * 180.02562 * 22 21 19 45 45 H 1.09008 * 113.75768 * 220.99200 * 27 14 13 46 46 H 1.08998 * 113.76033 * 89.63167 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.4068 2.9956 5.7899 13 6 4.9419 2.9611 5.8993 14 7 4.7456 3.2056 7.3453 15 6 5.6476 2.3688 8.1479 16 6 7.0629 2.8618 7.9908 17 8 7.2973 3.8167 7.2806 18 7 8.0684 2.2417 8.6396 19 6 9.3559 2.6906 8.4972 20 1 9.5645 3.5408 7.8648 21 6 10.3927 2.0510 9.1656 22 7 10.1390 1.0161 9.9347 23 14 12.1471 2.6621 8.9709 24 1 12.2352 4.0699 9.4354 25 1 13.0590 1.8158 9.7818 26 1 12.5418 2.5869 7.5414 27 6 3.3906 2.6148 7.2814 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8658 4.0937 -1.4127 34 1 3.1046 4.1733 1.2628 35 1 3.0901 3.3159 3.2976 36 1 1.8236 1.6588 5.2019 37 1 3.4630 1.0288 4.9122 38 1 3.0020 3.9868 5.5858 39 1 5.3764 1.9873 5.6736 40 1 5.4377 3.7804 5.3787 41 1 5.3576 2.4247 9.1971 42 1 5.5830 1.3352 7.8077 43 1 7.8810 1.4783 9.2079 44 1 10.8626 0.5697 10.4017 45 1 2.6470 3.1574 7.8652 46 1 3.3714 1.5397 7.4600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665271580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:38 Heat of formation + Delta-G solvation = 16.555371 kcal Electronic energy + Delta-G solvation = -27909.624576 eV Core-core repulsion = 23836.181488 eV Total energy + Delta-G solvation = -4073.443088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.54000 -41.40487 -40.35435 -39.46376 -36.24294 -35.90942 -35.25632 -33.33390 -32.65175 -31.50858 -30.74511 -28.65976 -27.04333 -26.73817 -25.16527 -24.36327 -23.46541 -22.25368 -21.35077 -20.96475 -20.40577 -19.89464 -19.00017 -17.84929 -17.42235 -17.25330 -16.91111 -16.61173 -16.55020 -16.23638 -16.12208 -15.70081 -15.56522 -15.48251 -15.06547 -14.79044 -14.73962 -14.25699 -13.97367 -13.69536 -13.52875 -13.52527 -13.42617 -13.07888 -13.02251 -12.84825 -12.45116 -12.33944 -12.29385 -12.13729 -11.84502 -11.76719 -11.65505 -11.49079 -11.16540 -10.42044 -10.32895 -10.09788 -10.02525 -9.99611 -9.66083 -8.47436 -5.96291 0.19630 1.35312 1.38806 1.40651 1.51588 1.63703 2.04357 2.09383 2.16944 2.28170 2.83936 3.19076 3.26440 3.44476 3.55372 3.57697 3.69686 3.99134 4.07145 4.15907 4.20689 4.21957 4.28826 4.31955 4.41316 4.51980 4.53752 4.58278 4.63983 4.67975 4.71779 4.81910 4.85445 4.89010 4.92513 5.07902 5.19444 5.36368 5.39197 5.45735 5.55049 5.73756 5.90693 6.08871 6.34885 6.59147 6.97727 7.08321 7.11609 7.55112 8.10678 8.69717 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001964 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.647597 B =14250.886296 C =14893.231003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.105 3.895 3 N -0.265 5.265 4 N -0.301 5.301 5 C -0.009 4.009 6 C -0.180 4.180 7 C -0.062 4.062 8 C 0.589 3.411 9 O -0.570 6.570 10 N -0.699 5.699 11 C 0.137 3.863 12 C -0.104 4.104 13 C 0.017 3.983 14 N -0.482 5.482 15 C 0.022 3.978 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.015 3.985 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.215 0.785 34 H 0.190 0.810 35 H 0.417 0.583 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.111 0.889 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.596 -0.578 -15.683 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.184 4.184 6 C -0.208 4.208 7 C -0.190 4.190 8 C 0.375 3.625 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.013 3.987 12 C -0.124 4.124 13 C -0.112 4.112 14 N -0.205 5.205 15 C -0.109 4.109 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.207 0.793 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.877 -1.021 -16.433 26.589 hybrid contribution 1.495 -0.193 0.734 1.676 sum -19.382 -1.214 -15.699 24.972 Atomic orbital electron populations 1.22003 0.92555 1.04540 1.02012 1.22317 0.97002 0.76110 1.05945 1.46065 1.44534 1.12832 1.01895 1.73188 1.19622 1.06153 1.14403 1.24179 1.03067 0.95269 0.95854 1.22710 1.05377 0.96746 0.96005 1.21566 1.12429 0.95339 0.89679 1.17041 0.77698 0.84088 0.83629 1.90767 1.47116 1.22715 1.84371 1.45582 1.63625 1.18548 1.07327 1.21426 1.02021 0.96114 0.79091 1.23148 0.94004 1.00554 0.94651 1.23859 0.96559 1.00529 0.90252 1.68405 1.02402 1.44316 1.05380 1.22355 0.90385 0.96398 1.01790 1.20784 0.87705 0.85408 0.83397 1.90482 1.85257 1.30999 1.43642 1.41959 1.06228 1.30096 1.42988 1.19612 0.83862 1.14520 1.28278 0.90333 1.26051 1.03879 0.95953 0.95520 1.69665 1.35147 1.21192 1.30146 0.84992 0.76663 0.78243 0.78473 1.19680 1.19500 1.19693 1.24091 0.91669 1.00321 0.95242 0.93342 0.91965 0.88079 0.87187 0.87541 0.76821 0.79293 0.74555 0.89654 0.92006 0.85873 0.92369 0.91023 0.87378 0.90719 0.77065 0.91304 0.87051 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.11 1.80 6.58 86.38 0.57 2.37 16 3 N -0.26 -5.51 3.35 -334.68 -1.12 -6.63 16 4 N -0.30 -6.26 11.90 -57.14 -0.68 -6.94 16 5 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 6 C -0.18 -2.73 10.50 22.66 0.24 -2.50 16 7 C -0.06 -1.24 6.96 40.79 0.28 -0.96 16 8 C 0.59 12.48 7.78 86.59 0.67 13.15 16 9 O -0.57 -14.98 14.68 -4.13 -0.06 -15.04 16 10 N -0.70 -11.35 5.54 -466.63 -2.59 -13.93 16 11 C 0.14 2.27 5.53 86.38 0.48 2.75 16 12 C -0.10 -1.82 3.94 -10.15 -0.04 -1.86 16 13 C 0.02 0.47 6.31 86.41 0.55 1.01 16 14 N -0.48 -14.41 5.95 -912.40 -5.43 -19.83 16 15 C 0.02 0.75 5.31 85.55 0.45 1.21 16 16 C 0.44 20.86 7.59 87.65 0.67 21.52 16 17 O -0.62 -33.93 15.13 -3.07 -0.05 -33.97 16 18 N -0.58 -29.61 5.29 -307.00 -1.62 -31.23 16 19 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.02 0.29 7.54 86.41 0.65 0.94 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.04 6.20 -2.39 -0.01 2.03 16 33 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.19 1.59 7.59 -2.91 -0.02 1.57 16 35 H 0.42 4.89 7.51 -92.70 -0.70 4.20 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 38 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.69 7.53 -2.38 -0.02 1.67 16 40 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 41 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.07 2.20 7.69 -2.39 -0.02 2.18 16 43 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 44 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.09 1.42 7.75 -2.39 -0.02 1.40 16 Total: -1.00 -76.29 388.00 -2.08 -78.37 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.41 Total: 35.09 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.56 Total: 18.61 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -11.15 Total: -128.08 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.11 Total: -49.01 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.29 -2.08 -78.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665271580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.921 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds