Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.53006 * 109.47452 * 240.00154 * 2 1 3 5 5 N 1.46898 * 109.47138 * 184.99841 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46949 * 60.00154 * 14 12 10 16 16 H 1.48496 * 109.47431 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47561 * 300.00356 * 14 12 10 18 18 N 1.46495 * 109.47359 * 120.00061 * 2 1 3 19 19 C 1.34774 * 120.00080 * 275.00294 * 18 2 1 20 20 O 1.21569 * 119.99788 * 359.97438 * 19 18 2 21 21 C 1.47712 * 120.00214 * 179.97438 * 19 18 2 22 22 C 1.41506 * 126.51985 * 179.97438 * 21 19 18 23 23 C 1.35359 * 105.50172 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.38386 * 179.97438 * 23 22 21 25 25 C 1.53007 * 117.49951 * 213.74640 * 24 23 22 26 26 C 1.53005 * 117.49971 * 145.08987 * 24 23 22 27 27 N 1.35036 * 107.23353 * 0.02562 * 23 22 21 28 28 H 0.96994 * 124.88496 * 180.02562 * 27 23 22 29 29 N 1.28477 * 110.22681 * 359.72755 * 27 23 22 30 30 H 1.09002 * 109.47542 * 60.00366 * 1 2 3 31 31 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47506 * 299.99674 * 1 2 3 33 33 H 1.08997 * 109.46770 * 64.99788 * 4 2 1 34 34 H 1.08995 * 109.47019 * 305.00001 * 4 2 1 35 35 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 0.97006 * 120.00437 * 95.00195 * 18 2 1 41 41 H 1.07999 * 127.24933 * 0.02562 * 22 21 19 42 42 H 1.08994 * 115.54996 * 359.42105 * 24 23 22 43 43 H 1.09000 * 117.49685 * 0.02562 * 25 24 23 44 44 H 1.08997 * 117.49380 * 145.01937 * 25 24 23 45 45 H 1.09001 * 117.49749 * 214.98208 * 26 24 23 46 46 H 1.09000 * 117.49791 * 359.97115 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5147 -2.3768 7 6 5.5318 -1.6031 -2.2813 8 8 6.1067 -1.1390 -1.3194 9 7 6.2357 -2.1979 -3.2648 10 6 7.6015 -2.2788 -3.1777 11 1 8.1134 -1.8656 -2.3212 12 6 8.3272 -2.8925 -4.1914 13 7 7.7042 -3.3958 -5.2333 14 14 10.1881 -3.0021 -4.0732 15 1 10.5627 -3.7618 -2.8534 16 1 10.7202 -3.6983 -5.2721 17 1 10.7610 -1.6341 -3.9996 18 7 2.0183 -0.6906 1.1961 19 6 2.1470 -0.0183 2.3571 20 8 1.8582 1.1614 2.4116 21 6 2.6389 -0.7147 3.5633 22 6 2.8265 -0.1470 4.8458 23 6 3.2875 -1.1544 5.6235 24 6 3.6447 -1.0641 7.0847 25 6 4.8006 -1.9332 7.5845 26 6 3.3591 -2.2870 7.9588 27 7 3.3686 -2.2553 4.8456 28 1 3.6704 -3.1264 5.1470 29 7 2.9825 -1.9842 3.6506 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.7517 -0.1583 -2.1369 34 1 1.6055 -1.7197 -1.2952 35 1 3.9280 0.0827 -1.0824 36 1 3.6097 -2.5188 -2.4310 37 1 3.7559 -0.9569 -3.2721 38 1 5.7759 -2.5694 -4.0339 39 1 8.2108 -3.8239 -5.9412 40 1 2.2491 -1.6318 1.1526 41 1 2.6410 0.8749 5.1418 42 1 3.5214 -0.0810 7.5389 43 1 5.3028 -2.5700 6.8563 44 1 5.4373 -1.5219 8.3677 45 1 3.0481 -2.1083 8.9881 46 1 2.9123 -3.1566 7.4770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669403028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = -3.843133 kcal Electronic energy + Delta-G solvation = -27767.455665 eV Core-core repulsion = 23693.128031 eV Total energy + Delta-G solvation = -4074.327634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.76604 -40.65330 -40.09969 -38.09868 -37.75868 -36.03746 -35.12365 -33.28782 -33.11882 -32.09550 -31.12822 -28.95616 -26.72848 -25.59973 -24.59678 -24.14512 -23.29292 -22.13660 -21.96531 -21.04000 -20.97029 -19.90739 -18.75041 -18.13442 -17.76913 -17.36779 -16.82548 -16.58197 -16.48728 -16.30519 -16.05637 -15.63169 -15.38415 -15.08754 -15.07897 -14.89416 -14.60080 -14.33882 -14.05096 -13.54991 -13.37021 -13.15240 -13.07810 -12.98480 -12.79264 -12.71264 -12.48373 -12.44202 -12.13474 -12.06466 -11.98257 -11.83228 -11.51242 -11.43205 -11.19876 -10.50275 -10.35873 -10.02035 -9.99210 -9.77572 -9.32973 -8.47250 -5.95896 0.50113 0.99381 1.38610 1.40289 1.51272 1.81787 2.05716 2.23086 2.28615 2.39540 2.90344 2.98747 3.19992 3.36546 3.44174 3.53631 3.76769 3.82211 4.02020 4.10994 4.17035 4.26122 4.33529 4.39794 4.52663 4.57571 4.59482 4.65915 4.73914 4.76373 4.77967 4.82221 4.98792 5.05702 5.13083 5.17680 5.28614 5.29488 5.39693 5.53712 5.87309 6.01595 6.09500 6.32636 6.49857 6.60184 6.84834 7.12300 7.20850 7.56235 8.12373 8.69873 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.002452 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.181056 B =11417.842323 C =13825.234162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.069 0.931 4 C 0.055 3.945 5 N -0.682 5.682 6 C 0.067 3.933 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.273 1.273 18 N -0.687 5.687 19 C 0.600 3.400 20 O -0.574 6.574 21 C -0.033 4.033 22 C -0.197 4.197 23 C 0.063 3.937 24 C -0.104 4.104 25 C -0.171 4.171 26 C -0.160 4.160 27 N -0.368 5.368 28 H 0.456 0.544 29 N -0.266 5.266 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.340 0.660 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.412 0.588 41 H 0.165 0.835 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 0.157 20.191 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.087 0.913 4 C -0.074 4.074 5 N -0.314 5.314 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.198 1.198 18 N -0.337 5.337 19 C 0.385 3.615 20 O -0.453 6.453 21 C -0.193 4.193 22 C -0.225 4.225 23 C -0.063 4.063 24 C -0.124 4.124 25 C -0.208 4.208 26 C -0.197 4.197 27 N -0.085 5.085 28 H 0.303 0.697 29 N -0.102 5.102 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.249 0.751 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.854 -0.320 20.344 25.191 hybrid contribution 1.001 0.373 -0.716 1.286 sum -13.852 0.054 19.628 24.024 Atomic orbital electron populations 1.22060 0.92792 1.03250 1.02914 1.21097 0.95191 0.96444 0.83432 0.91281 1.22383 0.86744 1.02143 0.96149 1.60055 1.05480 1.26323 1.39521 1.21540 0.90225 1.01813 0.92969 1.20967 0.90738 0.82434 0.83496 1.90505 1.72896 1.53101 1.34668 1.41918 1.06799 1.51782 1.20548 1.19597 0.83157 1.37049 1.06608 0.90616 1.26022 1.04862 0.95810 0.94545 1.69662 1.38310 1.38433 1.09596 0.85011 0.76885 0.78588 0.77990 1.19780 1.19305 1.19808 1.45723 1.64923 1.14684 1.08355 1.17080 0.76770 0.85316 0.82321 1.90731 1.52975 1.16198 1.85397 1.21940 1.09413 0.91534 0.96369 1.21606 1.08243 1.01368 0.91275 1.20813 1.03703 0.86946 0.94875 1.20674 1.06110 0.99588 0.85986 1.23219 0.91665 1.02145 1.03799 1.23220 0.98253 0.96987 1.01244 1.43278 1.47273 1.12643 1.05265 0.69709 1.73548 1.16112 1.17049 1.03510 0.89422 0.90931 0.93379 0.91477 0.88588 0.84238 0.87308 0.91282 0.76890 0.91266 0.75138 0.81734 0.83774 0.88912 0.86209 0.85909 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.48 71.98 0.68 -2.09 16 2 C 0.14 3.37 2.81 44.99 0.13 3.49 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 4 C 0.05 1.19 5.24 86.31 0.45 1.64 16 5 N -0.68 -21.41 5.85 -517.92 -3.03 -24.44 16 6 C 0.07 2.24 6.17 85.56 0.53 2.76 16 7 C 0.44 21.00 7.82 87.66 0.69 21.69 16 8 O -0.63 -35.65 15.78 -3.06 -0.05 -35.70 16 9 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 10 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 14 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 N -0.69 -18.79 4.80 -445.54 -2.14 -20.92 16 19 C 0.60 19.14 7.79 86.75 0.68 19.82 16 20 O -0.57 -21.14 16.59 -3.93 -0.07 -21.20 16 21 C -0.03 -0.95 7.13 42.46 0.30 -0.65 16 22 C -0.20 -4.91 10.73 22.41 0.24 -4.67 16 23 C 0.06 1.18 6.64 41.40 0.28 1.46 16 24 C -0.10 -1.18 6.26 -11.54 -0.07 -1.25 16 25 C -0.17 -1.44 10.22 30.62 0.31 -1.12 16 26 C -0.16 -1.11 10.23 30.62 0.31 -0.80 16 27 N -0.37 -7.08 6.80 -47.93 -0.33 -7.41 16 28 H 0.46 5.62 8.96 -219.99 -1.97 3.64 16 29 N -0.27 -7.02 11.92 -48.17 -0.57 -7.59 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.34 12.00 8.43 -89.69 -0.76 11.24 16 36 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 39 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.41 11.07 8.33 -92.70 -0.77 10.30 16 41 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 45 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 46 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.82 399.08 -2.87 -80.69 By element: Atomic # 1 Polarization: 53.52 SS G_CDS: -3.18 Total: 50.34 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.80 Total: 21.61 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -7.41 Total: -141.15 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.11 Total: -56.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -77.82 -2.87 -80.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669403028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.849 kcal (2) G-P(sol) polarization free energy of solvation -77.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds