Wall clock time and date at job start Tue Mar 31 2020 18:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47437 * 2 1 4 4 C 1.52993 * 109.47465 * 120.00159 * 2 1 3 5 5 N 1.46900 * 109.47404 * 175.00082 * 4 2 1 6 6 C 1.46901 * 111.00225 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47216 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99924 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00010 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00186 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99806 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00237 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99945 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00111 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46956 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47101 * 119.99690 * 14 12 10 17 17 H 1.48498 * 109.47087 * 240.00005 * 14 12 10 18 18 N 1.46507 * 109.46903 * 240.00515 * 2 1 3 19 19 C 1.34769 * 120.00097 * 84.99786 * 18 2 1 20 20 O 1.21607 * 120.00406 * 0.02562 * 19 18 2 21 21 C 1.47431 * 119.99864 * 180.02562 * 19 18 2 22 22 C 1.38043 * 126.41423 * 0.02562 * 21 19 18 23 23 N 1.34263 * 107.41434 * 179.97438 * 22 21 19 24 24 H 0.97003 * 125.74746 * 180.02562 * 23 22 21 25 25 N 1.39933 * 108.49500 * 359.79152 * 23 22 21 26 26 C 1.30449 * 108.89401 * 0.36061 * 25 23 22 27 27 C 1.50706 * 125.98728 * 179.90872 * 26 25 23 28 28 C 1.53000 * 117.49681 * 299.69171 * 27 26 25 29 29 C 1.53002 * 60.02940 * 107.47810 * 28 27 26 30 30 H 1.09010 * 109.46955 * 299.99751 * 1 2 3 31 31 H 1.08995 * 109.47279 * 59.99388 * 1 2 3 32 32 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47151 * 294.99675 * 4 2 1 34 34 H 1.08995 * 109.47342 * 54.99999 * 4 2 1 35 35 H 1.00904 * 110.99785 * 303.95257 * 5 4 2 36 36 H 1.09001 * 109.46686 * 299.99198 * 6 5 4 37 37 H 1.08994 * 109.47315 * 59.99295 * 6 5 4 38 38 H 0.97000 * 120.00242 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99440 * 180.02562 * 13 12 10 40 40 H 0.96996 * 119.99597 * 264.99455 * 18 2 1 41 41 H 1.07998 * 126.29208 * 359.96043 * 22 21 19 42 42 H 1.08999 * 115.56047 * 154.00618 * 27 26 25 43 43 H 1.09002 * 117.49833 * 214.97915 * 28 27 26 44 44 H 1.09002 * 117.49953 * 359.97438 * 28 27 26 45 45 H 1.09000 * 117.49996 * 107.50493 * 29 28 27 46 46 H 1.08999 * 117.49664 * 252.51862 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6054 2.2800 8 8 6.1066 -1.1411 1.3181 9 7 6.2355 -2.2013 3.2628 10 6 7.6013 -2.2823 3.1757 11 1 8.1132 -1.8689 2.3192 12 6 8.3268 -2.8971 4.1887 13 7 7.7039 -3.4006 5.2305 14 14 10.1878 -3.0081 4.0696 15 1 10.6419 -2.3707 2.8076 16 1 10.8004 -2.3077 5.2268 17 1 10.6002 -4.4346 4.0794 18 7 2.0183 -0.6905 -1.1963 19 6 2.1469 -0.0182 -2.3572 20 8 1.8582 1.1619 -2.4117 21 6 2.6378 -0.7132 -3.5611 22 6 3.0012 -2.0421 -3.6492 23 7 3.3877 -2.2699 -4.9147 24 1 3.6966 -3.1185 -5.2689 25 7 3.2646 -1.0782 -5.6378 26 6 2.8238 -0.1442 -4.8409 27 6 2.5540 1.2892 -5.2205 28 6 3.7302 2.1138 -5.7474 29 6 2.6296 1.6532 -6.7053 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7518 -0.1583 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 3.7996 -1.2883 0.3431 36 1 3.7559 -0.9587 3.2718 37 1 3.6095 -2.5199 2.4294 38 1 5.7758 -2.5723 4.0321 39 1 8.2105 -3.8294 5.9378 40 1 2.2490 -1.6317 -1.1527 41 1 2.9790 -2.7654 -2.8476 42 1 1.8101 1.8045 -4.6129 43 1 3.7600 3.1717 -5.4865 44 1 4.6991 1.6197 -5.8191 45 1 1.9356 2.4081 -7.0748 46 1 2.8745 0.8559 -7.4071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669702751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:05 Heat of formation + Delta-G solvation = 24.364433 kcal Electronic energy + Delta-G solvation = -28171.801127 eV Core-core repulsion = 24098.696666 eV Total energy + Delta-G solvation = -4073.104462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67219 -39.45312 -38.29625 -37.20946 -36.57044 -34.25489 -33.64076 -31.84433 -31.53759 -31.22372 -29.77818 -27.60866 -25.07566 -24.23371 -23.74833 -23.15343 -22.45757 -21.22409 -20.24022 -19.50171 -19.29869 -18.66771 -17.90421 -16.81552 -16.26682 -15.87946 -15.74997 -15.39860 -15.26388 -14.89950 -14.66865 -14.52601 -14.19341 -14.04749 -13.87464 -13.50786 -13.26317 -13.05070 -12.66663 -12.45151 -12.08761 -11.94504 -11.73299 -11.65706 -11.63078 -11.48751 -11.34775 -11.13325 -11.09857 -10.96249 -10.53090 -10.36616 -10.25183 -9.78251 -9.54812 -9.50381 -9.19201 -8.91099 -8.49170 -8.10433 -7.98864 -6.44729 -3.85484 1.28537 1.90312 2.42198 3.14036 3.16493 3.24961 3.32252 3.38735 3.86384 3.87507 4.03609 4.14565 4.27403 4.36578 4.68107 4.80403 4.87632 4.93798 5.00365 5.12493 5.18293 5.18968 5.22636 5.28377 5.43006 5.45436 5.53985 5.58473 5.63380 5.73071 5.74372 5.93025 5.99351 6.02806 6.08376 6.10515 6.19124 6.23639 6.49232 6.82194 7.13798 7.26661 7.52411 7.52757 7.58774 8.03660 8.30149 8.58274 9.15293 9.51324 10.02747 10.73045 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.002420 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.626659 B =11566.330097 C =12908.391783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.722 5.722 19 C 0.600 3.400 20 O -0.538 6.538 21 C -0.280 4.280 22 C 0.107 3.893 23 N -0.459 5.459 24 H 0.445 0.555 25 N -0.299 5.299 26 C 0.167 3.833 27 C -0.083 4.083 28 C -0.158 4.158 29 C -0.170 4.170 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.347 0.653 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.392 0.608 41 H 0.186 0.814 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 0.987 -15.577 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.373 5.373 19 C 0.388 3.612 20 O -0.416 6.416 21 C -0.295 4.295 22 C -0.046 4.046 23 N -0.164 5.164 24 H 0.289 0.711 25 N -0.121 5.121 26 C -0.001 4.001 27 C -0.103 4.103 28 C -0.196 4.196 29 C -0.208 4.208 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.226 0.774 41 H 0.203 0.797 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.340 2.400 -17.006 23.028 hybrid contribution 0.511 -2.317 1.280 2.696 sum -14.829 0.083 -15.726 21.615 Atomic orbital electron populations 1.22151 0.95106 1.01961 1.02762 1.21013 0.93314 0.98583 0.82881 0.88264 1.22313 0.88755 0.98933 0.97970 1.60006 1.07542 1.57504 1.04862 1.21696 0.95116 0.96900 0.94563 1.19816 0.88099 0.84259 0.85341 1.90539 1.71115 1.51405 1.33506 1.41872 1.07431 1.50905 1.19866 1.19749 0.81517 1.34952 1.06573 0.87894 1.25263 1.00694 0.96800 0.95220 1.69619 1.36609 1.38678 1.09408 0.85807 0.82244 0.77854 0.78495 1.19209 1.20693 1.20791 1.45823 1.68264 1.13513 1.09745 1.17119 0.76530 0.85931 0.81667 1.90729 1.50872 1.15211 1.84747 1.20234 1.19437 0.93662 0.96147 1.23169 0.95359 0.97174 0.88869 1.46058 1.51322 1.11611 1.07364 0.71053 1.77102 1.25091 0.90774 1.19138 1.21442 0.94265 0.94457 0.89899 1.20535 1.03599 0.88511 0.97610 1.22971 0.93816 1.00155 1.02663 1.23025 1.02229 1.03560 0.91965 0.91457 0.91799 0.92685 0.89448 0.95088 0.83329 0.89435 0.93927 0.77473 0.91920 0.77421 0.79708 0.84268 0.87954 0.88712 0.88324 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.61 2.88 -67.93 -0.20 1.41 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 4 C 0.05 0.55 5.30 -3.83 -0.02 0.53 16 5 N -0.67 -10.18 6.12 -115.06 -0.70 -10.88 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 7 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 8 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 11 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 14 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 N -0.72 -7.69 4.34 -54.88 -0.24 -7.93 16 19 C 0.60 7.89 7.78 -12.52 -0.10 7.79 16 20 O -0.54 -8.65 14.66 5.27 0.08 -8.57 16 21 C -0.28 -3.33 6.13 -105.07 -0.64 -3.97 16 22 C 0.11 0.91 11.52 -16.56 -0.19 0.72 16 23 N -0.46 -3.89 7.29 30.85 0.22 -3.67 16 24 H 0.44 2.18 8.96 -182.72 -1.64 0.54 16 25 N -0.30 -3.52 12.21 33.90 0.41 -3.11 16 26 C 0.17 2.11 6.80 -82.02 -0.56 1.55 16 27 C -0.08 -0.97 5.66 -91.73 -0.52 -1.49 16 28 C -0.16 -1.66 10.23 -26.73 -0.27 -1.93 16 29 C -0.17 -1.63 10.14 -26.69 -0.27 -1.90 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.35 5.39 7.28 -39.29 -0.29 5.10 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.39 3.24 7.08 -40.82 -0.29 2.95 16 41 H 0.19 0.83 7.46 -52.49 -0.39 0.44 16 42 H 0.14 1.76 6.73 -51.93 -0.35 1.41 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.98 7.90 -51.93 -0.41 0.57 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -35.65 392.46 -9.17 -44.82 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -7.82 Total: 16.15 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.77 Total: 4.59 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.36 Total: -63.21 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.65 -9.17 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669702751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.184 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds