Wall clock time and date at job start Tue Mar 31 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47437 * 2 1 4 4 C 1.52993 * 109.47465 * 120.00159 * 2 1 3 5 5 N 1.46900 * 109.47404 * 175.00082 * 4 2 1 6 6 C 1.46901 * 111.00225 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47216 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99924 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00010 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00186 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99806 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00237 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99945 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00111 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46956 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47101 * 119.99690 * 14 12 10 17 17 H 1.48498 * 109.47087 * 240.00005 * 14 12 10 18 18 N 1.46507 * 109.46903 * 240.00515 * 2 1 3 19 19 C 1.34769 * 120.00097 * 84.99786 * 18 2 1 20 20 O 1.21607 * 120.00406 * 0.02562 * 19 18 2 21 21 C 1.47431 * 119.99864 * 180.02562 * 19 18 2 22 22 C 1.38043 * 126.41423 * 0.02562 * 21 19 18 23 23 N 1.34263 * 107.41434 * 179.97438 * 22 21 19 24 24 H 0.97003 * 125.74746 * 180.02562 * 23 22 21 25 25 N 1.39933 * 108.49500 * 359.79152 * 23 22 21 26 26 C 1.30449 * 108.89401 * 0.36061 * 25 23 22 27 27 C 1.50706 * 125.98728 * 179.90872 * 26 25 23 28 28 C 1.53000 * 117.49681 * 299.69171 * 27 26 25 29 29 C 1.53002 * 60.02940 * 107.47810 * 28 27 26 30 30 H 1.09010 * 109.46955 * 299.99751 * 1 2 3 31 31 H 1.08995 * 109.47279 * 59.99388 * 1 2 3 32 32 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47151 * 294.99675 * 4 2 1 34 34 H 1.08995 * 109.47342 * 54.99999 * 4 2 1 35 35 H 1.00904 * 110.99785 * 303.95257 * 5 4 2 36 36 H 1.09001 * 109.46686 * 299.99198 * 6 5 4 37 37 H 1.08994 * 109.47315 * 59.99295 * 6 5 4 38 38 H 0.97000 * 120.00242 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99440 * 180.02562 * 13 12 10 40 40 H 0.96996 * 119.99597 * 264.99455 * 18 2 1 41 41 H 1.07998 * 126.29208 * 359.96043 * 22 21 19 42 42 H 1.08999 * 115.56047 * 154.00618 * 27 26 25 43 43 H 1.09002 * 117.49833 * 214.97915 * 28 27 26 44 44 H 1.09002 * 117.49953 * 359.97438 * 28 27 26 45 45 H 1.09000 * 117.49996 * 107.50493 * 29 28 27 46 46 H 1.08999 * 117.49664 * 252.51862 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6054 2.2800 8 8 6.1066 -1.1411 1.3181 9 7 6.2355 -2.2013 3.2628 10 6 7.6013 -2.2823 3.1757 11 1 8.1132 -1.8689 2.3192 12 6 8.3268 -2.8971 4.1887 13 7 7.7039 -3.4006 5.2305 14 14 10.1878 -3.0081 4.0696 15 1 10.6419 -2.3707 2.8076 16 1 10.8004 -2.3077 5.2268 17 1 10.6002 -4.4346 4.0794 18 7 2.0183 -0.6905 -1.1963 19 6 2.1469 -0.0182 -2.3572 20 8 1.8582 1.1619 -2.4117 21 6 2.6378 -0.7132 -3.5611 22 6 3.0012 -2.0421 -3.6492 23 7 3.3877 -2.2699 -4.9147 24 1 3.6966 -3.1185 -5.2689 25 7 3.2646 -1.0782 -5.6378 26 6 2.8238 -0.1442 -4.8409 27 6 2.5540 1.2892 -5.2205 28 6 3.7302 2.1138 -5.7474 29 6 2.6296 1.6532 -6.7053 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7518 -0.1583 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 3.7996 -1.2883 0.3431 36 1 3.7559 -0.9587 3.2718 37 1 3.6095 -2.5199 2.4294 38 1 5.7758 -2.5723 4.0321 39 1 8.2105 -3.8294 5.9378 40 1 2.2490 -1.6317 -1.1527 41 1 2.9790 -2.7654 -2.8476 42 1 1.8101 1.8045 -4.6129 43 1 3.7600 3.1717 -5.4865 44 1 4.6991 1.6197 -5.8191 45 1 1.9356 2.4081 -7.0748 46 1 2.8745 0.8559 -7.4071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669702751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:04 Heat of formation + Delta-G solvation = -4.002424 kcal Electronic energy + Delta-G solvation = -28173.031207 eV Core-core repulsion = 24098.696666 eV Total energy + Delta-G solvation = -4074.334541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.47478 -40.46452 -40.02234 -38.05382 -37.66504 -36.00643 -35.01227 -33.25361 -32.72110 -32.34628 -30.60878 -28.93595 -26.68919 -25.09027 -24.81272 -24.26403 -23.26871 -22.07971 -21.16986 -21.04509 -20.32344 -19.91516 -19.46577 -17.94156 -17.57648 -16.90878 -16.82075 -16.55625 -16.32514 -16.20148 -15.97637 -15.69549 -15.38943 -15.30172 -15.06789 -14.85090 -14.31848 -14.08453 -13.94281 -13.54697 -13.30248 -13.07704 -12.99606 -12.93764 -12.77277 -12.59427 -12.44215 -12.39614 -12.17795 -12.12276 -11.96262 -11.87196 -11.50816 -11.38573 -10.76621 -10.34628 -10.31144 -10.11332 -10.00242 -9.71771 -9.26772 -8.46523 -5.94643 0.53777 1.00112 1.36256 1.42009 1.55585 1.76107 2.07138 2.28000 2.30952 2.46462 2.93134 3.02454 3.21372 3.37383 3.54563 3.60480 3.91205 4.01035 4.04247 4.12806 4.26333 4.31150 4.33385 4.37535 4.45369 4.53615 4.63791 4.65418 4.73923 4.74564 4.81316 4.86919 4.92810 5.16048 5.19770 5.24604 5.32555 5.35416 5.41814 5.62489 5.90029 6.12121 6.23322 6.43420 6.45882 6.61501 6.69114 7.14080 7.38300 7.58212 8.13975 8.70971 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.002420 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.626659 B =11566.330097 C =12908.391783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.065 0.935 4 C 0.057 3.943 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.272 1.272 17 H -0.269 1.269 18 N -0.711 5.711 19 C 0.595 3.405 20 O -0.579 6.579 21 C -0.316 4.316 22 C 0.133 3.867 23 N -0.447 5.447 24 H 0.461 0.539 25 N -0.321 5.321 26 C 0.149 3.851 27 C -0.103 4.103 28 C -0.161 4.161 29 C -0.150 4.150 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.344 0.656 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.406 0.594 41 H 0.229 0.771 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 -0.854 -14.976 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 H 0.083 0.917 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.198 1.198 17 H -0.195 1.195 18 N -0.363 5.363 19 C 0.384 3.616 20 O -0.460 6.460 21 C -0.331 4.331 22 C -0.021 4.021 23 N -0.152 5.152 24 H 0.309 0.691 25 N -0.144 5.144 26 C -0.018 4.018 27 C -0.123 4.123 28 C -0.199 4.199 29 C -0.188 4.188 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.246 0.754 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.104 0.896 45 H 0.136 0.864 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.151 0.507 -16.391 23.017 hybrid contribution 0.731 -1.763 1.077 2.192 sum -15.420 -1.256 -15.314 21.769 Atomic orbital electron populations 1.22057 0.93219 1.03147 1.02568 1.20954 0.94643 0.96918 0.83075 0.91683 1.22358 0.86079 1.00667 0.98073 1.59966 1.10349 1.57682 1.04142 1.21551 0.90010 0.99245 0.95855 1.20982 0.90830 0.82019 0.83775 1.90510 1.72913 1.52680 1.35016 1.41934 1.06791 1.51700 1.20665 1.19656 0.83180 1.36639 1.06605 0.90576 1.25990 1.04684 0.95941 0.94592 1.69669 1.38101 1.38588 1.09668 0.84915 0.77195 0.78314 0.78189 1.19988 1.19763 1.19460 1.45710 1.67532 1.14052 1.08969 1.17379 0.76084 0.85597 0.82544 1.90700 1.52836 1.16991 1.85456 1.20317 1.21863 0.95303 0.95636 1.23729 0.92436 0.96521 0.89454 1.46111 1.50282 1.11533 1.07309 0.69079 1.77025 1.25813 0.91670 1.19857 1.21632 0.94719 0.94880 0.90598 1.20512 1.04011 0.88777 0.98984 1.22998 0.93341 1.00397 1.03182 1.23063 1.01558 1.03476 0.90660 0.90077 0.93617 0.90701 0.88429 0.91978 0.83705 0.87748 0.90702 0.76885 0.91325 0.75805 0.75430 0.85815 0.87064 0.89616 0.86387 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.15 3.09 2.88 44.99 0.13 3.22 16 3 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 4 C 0.06 1.09 5.30 86.30 0.46 1.54 16 5 N -0.69 -19.69 6.12 -517.95 -3.17 -22.85 16 6 C 0.07 2.03 6.17 85.56 0.53 2.56 16 7 C 0.44 19.97 7.82 87.66 0.69 20.66 16 8 O -0.62 -34.05 15.78 -3.07 -0.05 -34.10 16 9 N -0.57 -28.53 5.29 -306.98 -1.62 -30.16 16 10 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 11 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 14 Si 0.99 42.47 29.55 68.60 2.03 44.49 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 N -0.71 -14.40 4.34 -445.80 -1.94 -16.34 16 19 C 0.60 15.93 7.78 86.67 0.67 16.61 16 20 O -0.58 -19.71 14.66 -4.05 -0.06 -19.77 16 21 C -0.32 -7.50 6.13 -20.15 -0.12 -7.63 16 22 C 0.13 1.99 11.52 84.27 0.97 2.96 16 23 N -0.45 -6.86 7.29 -56.32 -0.41 -7.27 16 24 H 0.46 3.54 8.96 -213.42 -1.91 1.62 16 25 N -0.32 -7.48 12.21 -46.67 -0.57 -8.05 16 26 C 0.15 3.85 6.80 43.52 0.30 4.15 16 27 C -0.10 -2.56 5.66 -11.51 -0.07 -2.63 16 28 C -0.16 -3.53 10.23 30.60 0.31 -3.22 16 29 C -0.15 -2.89 10.14 30.62 0.31 -2.58 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.34 10.11 7.28 -89.69 -0.65 9.46 16 36 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 39 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.41 5.74 7.08 -92.71 -0.66 5.09 16 41 H 0.23 1.18 7.46 -2.91 -0.02 1.16 16 42 H 0.12 3.42 6.73 -2.39 -0.02 3.40 16 43 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.10 1.92 7.90 -2.39 -0.02 1.90 16 Total: -1.00 -80.42 392.46 -2.26 -82.68 By element: Atomic # 1 Polarization: 46.60 SS G_CDS: -2.89 Total: 43.71 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.14 Total: 16.01 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -7.43 Total: -133.01 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.11 Total: -53.87 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -80.42 -2.26 -82.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669702751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.681 kcal (2) G-P(sol) polarization free energy of solvation -80.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds