Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47564 * 2 1 4 4 C 1.50703 * 109.47048 * 239.99611 * 2 1 3 5 5 O 1.21281 * 120.00461 * 239.99900 * 4 2 1 6 6 N 1.34771 * 119.99826 * 60.00277 * 4 2 1 7 7 C 1.46501 * 120.00354 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47334 * 179.97438 * 7 6 4 9 9 H 1.09003 * 110.52380 * 307.79548 * 8 7 6 10 10 C 1.55061 * 110.58594 * 185.00125 * 8 7 6 11 11 C 1.55023 * 102.13348 * 204.78624 * 10 8 7 12 12 C 1.53324 * 103.78694 * 20.86322 * 11 10 8 13 13 C 1.52644 * 115.56381 * 133.64309 * 12 11 10 14 14 N 1.47229 * 87.78111 * 90.04653 * 13 12 11 15 15 C 1.36929 * 135.96928 * 206.41470 * 14 13 12 16 16 H 1.08006 * 119.99870 * 7.80348 * 15 14 13 17 17 C 1.38816 * 120.00238 * 187.80548 * 15 14 13 18 18 N 1.31613 * 119.99924 * 195.33338 * 17 15 14 19 19 Si 1.86798 * 119.99528 * 15.32917 * 17 15 14 20 20 H 1.48501 * 109.47162 * 269.99583 * 19 17 15 21 21 H 1.48507 * 109.46522 * 150.00004 * 19 17 15 22 22 H 1.48498 * 109.47295 * 30.00249 * 19 17 15 23 23 C 1.47221 * 88.06476 * 26.66859 * 14 13 12 24 24 O 1.42845 * 108.32768 * 1.60407 * 12 11 10 25 25 N 1.46503 * 109.47270 * 120.00166 * 2 1 3 26 26 C 1.34436 * 126.82457 * 34.99628 * 25 2 1 27 27 N 1.30828 * 108.07434 * 179.97438 * 26 25 2 28 28 C 1.33237 * 109.83573 * 359.97438 * 27 26 25 29 29 N 1.30716 * 108.94295 * 359.75302 * 28 27 26 30 30 H 1.09007 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47171 * 299.99891 * 1 2 3 32 32 H 1.08995 * 109.47397 * 60.00436 * 1 2 3 33 33 H 0.97010 * 119.99937 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.46814 * 59.99869 * 7 6 4 35 35 H 1.08997 * 109.47558 * 300.00447 * 7 6 4 36 36 H 1.09000 * 110.87112 * 86.62772 * 10 8 7 37 37 H 1.08998 * 111.04731 * 323.02892 * 10 8 7 38 38 H 1.09001 * 110.56238 * 262.28898 * 11 10 8 39 39 H 1.08995 * 110.69137 * 139.49727 * 11 10 8 40 40 H 1.09001 * 113.50036 * 335.32317 * 13 12 11 41 41 H 1.09001 * 113.56148 * 204.78134 * 13 12 11 42 42 H 0.97000 * 120.00254 * 354.90242 * 18 17 15 43 43 H 1.08998 * 113.49938 * 88.05938 * 23 14 13 44 44 H 1.08996 * 113.50607 * 218.60684 * 23 14 13 45 45 H 1.07998 * 125.95729 * 0.02562 * 26 25 2 46 46 H 1.07997 * 125.53351 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 6 1.6849 -0.2196 -4.8999 9 1 0.6038 -0.0888 -4.8507 10 6 2.0819 -0.9994 -6.1800 11 6 2.0852 0.1180 -7.2545 12 6 2.2340 1.4082 -6.4395 13 6 3.2688 2.4014 -6.9616 14 7 2.1966 3.0069 -7.7685 15 6 2.1253 3.7173 -8.9369 16 1 3.0063 3.8383 -9.5500 17 6 0.9209 4.2822 -9.3334 18 7 0.7653 4.6979 -10.5725 19 14 -0.4790 4.4523 -8.1084 20 1 -1.3235 3.2315 -8.1491 21 1 -1.3033 5.6364 -8.4602 22 1 0.0769 4.6244 -6.7422 23 6 1.2350 2.5195 -6.7659 24 8 2.3447 1.0573 -5.0592 25 7 2.0184 -0.6907 1.1962 26 6 1.4559 -1.7519 1.7999 27 7 2.1939 -2.0700 2.8323 28 6 3.2317 -1.2389 2.9193 29 7 3.1710 -0.3798 1.9360 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.1488 0.5385 -2.5435 34 1 1.8325 -1.9682 -3.6508 35 1 3.2854 -0.9401 -3.6506 36 1 1.3401 -1.7625 -6.4156 37 1 3.0726 -1.4421 -6.0771 38 1 1.1457 0.1205 -7.8071 39 1 2.9279 -0.0043 -7.9348 40 1 4.0535 1.9376 -7.5593 41 1 3.6618 3.0660 -6.1921 42 1 1.5144 4.6779 -11.1884 43 1 1.0752 3.2157 -5.9426 44 1 0.3031 2.1553 -7.1982 45 1 0.5528 -2.2547 1.4868 46 1 4.0005 -1.2721 3.6770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673533315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = 83.205782 kcal Electronic energy + Delta-G solvation = -28819.781291 eV Core-core repulsion = 24749.228382 eV Total energy + Delta-G solvation = -4070.552909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43612 -40.50147 -39.93923 -37.11611 -35.45935 -34.95672 -32.41632 -32.15267 -31.66999 -30.67805 -29.38482 -27.27081 -25.69769 -25.53151 -24.00302 -22.43152 -22.15164 -21.64828 -21.38969 -20.51202 -19.21492 -18.25568 -17.58612 -17.48813 -16.77594 -16.12878 -15.93904 -15.83085 -15.55597 -15.02914 -14.85257 -14.57823 -14.52592 -14.11506 -13.81024 -13.59816 -13.35390 -13.20713 -13.13389 -12.93529 -12.79106 -12.44421 -12.06503 -11.95154 -11.68845 -11.55752 -11.32915 -11.11359 -10.78572 -10.76073 -10.56494 -10.38305 -10.31857 -10.05182 -9.94705 -9.83677 -9.50288 -9.36400 -9.01013 -8.78553 -7.27893 -6.38867 -3.31292 1.26089 1.76609 2.07833 2.68218 2.76650 3.32148 3.41343 3.55650 3.67875 3.83956 3.99040 4.10290 4.24341 4.45062 4.48584 4.51477 4.59413 4.76912 4.79126 4.80453 4.82231 4.86157 4.99503 5.03776 5.24785 5.27016 5.31266 5.37236 5.44709 5.69303 5.77809 5.88273 5.97192 6.09926 6.13091 6.16331 6.16876 6.22656 6.26087 6.30567 6.40065 6.47646 6.99658 7.00468 7.21331 7.68756 7.77961 8.16110 8.89148 9.41621 10.27322 11.11246 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.002281 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.740872 B =12274.803626 C =12783.402543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.134 0.866 4 C 0.503 3.497 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.129 3.871 8 C 0.062 3.938 9 H 0.078 0.922 10 C -0.146 4.146 11 C -0.112 4.112 12 C 0.062 3.938 13 C 0.128 3.872 14 N -0.615 5.615 15 C -0.303 4.303 16 H 0.083 0.917 17 C -0.023 4.023 18 N -0.929 5.929 19 Si 1.061 2.939 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.092 3.908 24 O -0.356 6.356 25 N -0.363 5.363 26 C 0.269 3.731 27 N -0.546 5.546 28 C 0.199 3.801 29 N -0.312 5.312 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.215 0.785 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -13.478 21.768 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.152 0.848 4 C 0.286 3.714 5 O -0.400 6.400 6 N -0.368 5.368 7 C 0.006 3.994 8 C 0.003 3.997 9 H 0.096 0.904 10 C -0.184 4.184 11 C -0.150 4.150 12 C 0.021 3.979 13 C 0.002 3.998 14 N -0.345 5.345 15 C -0.429 4.429 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.571 5.571 19 Si 0.893 3.107 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.034 4.034 24 O -0.274 6.274 25 N -0.153 5.153 26 C -0.028 4.028 27 N -0.273 5.273 28 C -0.104 4.104 29 N -0.139 5.139 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.243 0.757 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.231 0.769 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.019 -13.113 21.966 25.760 hybrid contribution 1.189 -0.005 -0.594 1.329 sum -1.829 -13.118 21.372 25.144 Atomic orbital electron populations 1.22199 0.89862 1.04606 1.05421 1.21217 0.96493 0.98226 0.80953 0.84815 1.20547 0.81041 0.85150 0.84673 1.90789 1.36822 1.25924 1.86437 1.45863 1.53552 1.32309 1.05061 1.21496 1.00647 0.95526 0.81735 1.23362 0.97142 0.85091 0.94081 0.90450 1.23141 1.02758 0.98390 0.94110 1.22374 1.04074 0.91269 0.97267 1.23659 0.99907 0.94326 0.80018 1.22395 0.92404 0.92198 0.92846 1.45931 1.02084 1.65298 1.21214 1.20095 0.99150 1.30014 0.93684 0.89887 1.25787 0.99336 0.97423 0.99684 1.70900 1.32487 1.50837 1.02859 0.83794 0.75540 0.76301 0.75100 1.22156 1.22152 1.20743 1.23118 0.94540 0.93261 0.92451 1.88770 1.76819 1.35533 1.26308 1.50064 1.18896 1.24679 1.21687 1.25890 0.99210 0.87808 0.89916 1.70564 1.07251 1.28625 1.20864 1.26006 0.97223 0.90107 0.97016 1.78081 1.02403 1.25356 1.08048 0.90618 0.89763 0.88659 0.75749 0.89863 0.90250 0.90021 0.90231 0.90014 0.89927 0.93128 0.93905 0.92757 0.93113 0.92922 0.76900 0.76604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 8.75 37.16 0.33 -0.19 16 2 C 0.14 0.98 3.77 -69.08 -0.26 0.72 16 3 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.50 4.90 7.22 -10.99 -0.08 4.82 16 5 O -0.52 -7.47 16.42 5.56 0.09 -7.38 16 6 N -0.72 -5.88 5.45 -60.29 -0.33 -6.21 16 7 C 0.13 1.21 5.42 -4.04 -0.02 1.19 16 8 C 0.06 0.64 3.38 -25.64 -0.09 0.55 16 9 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.15 -1.51 6.60 -24.57 -0.16 -1.67 16 11 C -0.11 -1.60 6.46 -25.49 -0.16 -1.76 16 12 C 0.06 1.03 1.66 -90.66 -0.15 0.88 16 13 C 0.13 2.52 8.20 -8.03 -0.07 2.45 16 14 N -0.62 -14.70 3.58 -184.60 -0.66 -15.36 16 15 C -0.30 -8.51 11.03 -15.06 -0.17 -8.67 16 16 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -28.64 13.70 55.49 0.76 -27.88 16 19 Si 1.06 25.73 25.51 -169.99 -4.34 21.40 16 20 H -0.29 -6.74 6.97 56.52 0.39 -6.34 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.35 5.65 56.52 0.32 -6.03 16 23 C 0.09 1.87 5.12 -7.88 -0.04 1.83 16 24 O -0.36 -5.11 11.03 -35.23 -0.39 -5.50 16 25 N -0.36 -3.55 3.04 -57.24 -0.17 -3.73 16 26 C 0.27 2.41 11.77 -90.65 -1.07 1.35 16 27 N -0.55 -5.98 11.19 -15.83 -0.18 -6.15 16 28 C 0.20 2.07 13.03 -91.81 -1.20 0.87 16 29 N -0.31 -3.71 12.70 29.29 0.37 -3.34 16 30 H 0.07 0.19 7.22 -51.93 -0.37 -0.18 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.16 7.56 -51.93 -0.39 -0.23 16 33 H 0.41 2.52 7.89 -40.82 -0.32 2.20 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 38 H 0.08 1.22 7.82 -51.93 -0.41 0.81 16 39 H 0.08 1.20 7.81 -51.93 -0.41 0.80 16 40 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 43 H 0.05 1.04 6.98 -51.93 -0.36 0.67 16 44 H 0.05 1.08 6.08 -51.93 -0.32 0.76 16 45 H 0.21 1.04 7.32 -52.49 -0.38 0.66 16 46 H 0.22 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -37.84 376.75 -9.24 -47.08 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.84 Total: -0.21 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.23 Total: 1.61 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.21 Total: -62.67 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.30 Total: -12.88 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.34 Total: 21.40 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.84 -9.24 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673533315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.284 kcal (2) G-P(sol) polarization free energy of solvation -37.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds