Wall clock time and date at job start Tue Mar 31 2020 18:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47564 * 2 1 4 4 C 1.50703 * 109.47048 * 239.99611 * 2 1 3 5 5 O 1.21281 * 120.00461 * 239.99900 * 4 2 1 6 6 N 1.34771 * 119.99826 * 60.00277 * 4 2 1 7 7 C 1.46501 * 120.00354 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47334 * 179.97438 * 7 6 4 9 9 H 1.09003 * 110.52380 * 307.79548 * 8 7 6 10 10 C 1.55061 * 110.58594 * 185.00125 * 8 7 6 11 11 C 1.55023 * 102.13348 * 204.78624 * 10 8 7 12 12 C 1.53324 * 103.78694 * 20.86322 * 11 10 8 13 13 C 1.52644 * 115.56381 * 133.64309 * 12 11 10 14 14 N 1.47229 * 87.78111 * 90.04653 * 13 12 11 15 15 C 1.36929 * 135.96928 * 206.41470 * 14 13 12 16 16 H 1.08006 * 119.99870 * 7.80348 * 15 14 13 17 17 C 1.38816 * 120.00238 * 187.80548 * 15 14 13 18 18 N 1.31613 * 119.99924 * 195.33338 * 17 15 14 19 19 Si 1.86798 * 119.99528 * 15.32917 * 17 15 14 20 20 H 1.48501 * 109.47162 * 269.99583 * 19 17 15 21 21 H 1.48507 * 109.46522 * 150.00004 * 19 17 15 22 22 H 1.48498 * 109.47295 * 30.00249 * 19 17 15 23 23 C 1.47221 * 88.06476 * 26.66859 * 14 13 12 24 24 O 1.42845 * 108.32768 * 1.60407 * 12 11 10 25 25 N 1.46503 * 109.47270 * 120.00166 * 2 1 3 26 26 C 1.34436 * 126.82457 * 34.99628 * 25 2 1 27 27 N 1.30828 * 108.07434 * 179.97438 * 26 25 2 28 28 C 1.33237 * 109.83573 * 359.97438 * 27 26 25 29 29 N 1.30716 * 108.94295 * 359.75302 * 28 27 26 30 30 H 1.09007 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47171 * 299.99891 * 1 2 3 32 32 H 1.08995 * 109.47397 * 60.00436 * 1 2 3 33 33 H 0.97010 * 119.99937 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.46814 * 59.99869 * 7 6 4 35 35 H 1.08997 * 109.47558 * 300.00447 * 7 6 4 36 36 H 1.09000 * 110.87112 * 86.62772 * 10 8 7 37 37 H 1.08998 * 111.04731 * 323.02892 * 10 8 7 38 38 H 1.09001 * 110.56238 * 262.28898 * 11 10 8 39 39 H 1.08995 * 110.69137 * 139.49727 * 11 10 8 40 40 H 1.09001 * 113.50036 * 335.32317 * 13 12 11 41 41 H 1.09001 * 113.56148 * 204.78134 * 13 12 11 42 42 H 0.97000 * 120.00254 * 354.90242 * 18 17 15 43 43 H 1.08998 * 113.49938 * 88.05938 * 23 14 13 44 44 H 1.08996 * 113.50607 * 218.60684 * 23 14 13 45 45 H 1.07998 * 125.95729 * 0.02562 * 26 25 2 46 46 H 1.07997 * 125.53351 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 6 1.6849 -0.2196 -4.8999 9 1 0.6038 -0.0888 -4.8507 10 6 2.0819 -0.9994 -6.1800 11 6 2.0852 0.1180 -7.2545 12 6 2.2340 1.4082 -6.4395 13 6 3.2688 2.4014 -6.9616 14 7 2.1966 3.0069 -7.7685 15 6 2.1253 3.7173 -8.9369 16 1 3.0063 3.8383 -9.5500 17 6 0.9209 4.2822 -9.3334 18 7 0.7653 4.6979 -10.5725 19 14 -0.4790 4.4523 -8.1084 20 1 -1.3235 3.2315 -8.1491 21 1 -1.3033 5.6364 -8.4602 22 1 0.0769 4.6244 -6.7422 23 6 1.2350 2.5195 -6.7659 24 8 2.3447 1.0573 -5.0592 25 7 2.0184 -0.6907 1.1962 26 6 1.4559 -1.7519 1.7999 27 7 2.1939 -2.0700 2.8323 28 6 3.2317 -1.2389 2.9193 29 7 3.1710 -0.3798 1.9360 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.1488 0.5385 -2.5435 34 1 1.8325 -1.9682 -3.6508 35 1 3.2854 -0.9401 -3.6506 36 1 1.3401 -1.7625 -6.4156 37 1 3.0726 -1.4421 -6.0771 38 1 1.1457 0.1205 -7.8071 39 1 2.9279 -0.0043 -7.9348 40 1 4.0535 1.9376 -7.5593 41 1 3.6618 3.0660 -6.1921 42 1 1.5144 4.6779 -11.1884 43 1 1.0752 3.2157 -5.9426 44 1 0.3031 2.1553 -7.1982 45 1 0.5528 -2.2547 1.4868 46 1 4.0005 -1.2721 3.6770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673533315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:44 Heat of formation + Delta-G solvation = 55.403883 kcal Electronic energy + Delta-G solvation = -28820.986872 eV Core-core repulsion = 24749.228382 eV Total energy + Delta-G solvation = -4071.758490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.11994 -41.65925 -40.84209 -38.44697 -36.07380 -35.86770 -34.48811 -33.15177 -32.38529 -31.46877 -30.46457 -28.74741 -27.14066 -26.29563 -25.04902 -23.38668 -23.01675 -22.79429 -22.39997 -21.22182 -20.75440 -19.48589 -18.95324 -18.21604 -17.70591 -17.40392 -16.88775 -16.61337 -16.41753 -16.17854 -15.97539 -15.73936 -15.38021 -15.26586 -15.11257 -14.82998 -14.51014 -14.33918 -13.82247 -13.53809 -13.44097 -13.39775 -13.28917 -13.18431 -12.68971 -12.60137 -12.50046 -12.44841 -12.27295 -12.05393 -11.75776 -11.54015 -11.45184 -11.37491 -11.05826 -10.88113 -10.80762 -10.55224 -10.37475 -10.24876 -9.28970 -8.65030 -5.49897 0.57945 1.18514 1.36678 1.38383 1.52183 1.67025 1.97657 2.09733 2.52694 2.55857 3.06306 3.16458 3.33937 3.40575 3.45763 3.54000 3.59913 3.65365 3.78706 3.91908 3.96080 4.10817 4.26589 4.37964 4.43679 4.49091 4.61647 4.62020 4.63170 4.68110 4.68918 4.82077 4.82842 4.91576 4.99998 5.07219 5.10243 5.14782 5.22305 5.24421 5.28662 5.44664 5.79998 5.92356 6.01663 6.35318 6.66766 7.01395 7.07994 7.29227 8.23389 8.86678 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.002281 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.740872 B =12274.803626 C =12783.402543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.140 0.860 4 C 0.505 3.495 5 O -0.574 6.574 6 N -0.704 5.704 7 C 0.135 3.865 8 C 0.062 3.938 9 H 0.102 0.898 10 C -0.135 4.135 11 C -0.116 4.116 12 C 0.089 3.911 13 C 0.120 3.880 14 N -0.645 5.645 15 C -0.291 4.291 16 H 0.049 0.951 17 C -0.082 4.082 18 N -0.965 5.965 19 Si 1.101 2.899 20 H -0.269 1.269 21 H -0.303 1.303 22 H -0.256 1.256 23 C 0.087 3.913 24 O -0.363 6.363 25 N -0.368 5.368 26 C 0.270 3.730 27 N -0.575 5.575 28 C 0.194 3.806 29 N -0.352 5.352 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.420 0.580 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.247 0.753 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.250 0.750 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -15.123 24.058 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.158 0.842 4 C 0.289 3.711 5 O -0.453 6.453 6 N -0.357 5.357 7 C 0.011 3.989 8 C 0.005 3.995 9 H 0.119 0.881 10 C -0.173 4.173 11 C -0.154 4.154 12 C 0.048 3.952 13 C -0.006 4.006 14 N -0.375 5.375 15 C -0.419 4.419 16 H 0.067 0.933 17 C -0.275 4.275 18 N -0.609 5.609 19 Si 0.926 3.074 20 H -0.195 1.195 21 H -0.231 1.231 22 H -0.181 1.181 23 C -0.038 4.038 24 O -0.281 6.281 25 N -0.158 5.158 26 C -0.026 4.026 27 N -0.302 5.302 28 C -0.109 4.109 29 N -0.179 5.179 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.257 0.743 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.266 0.734 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.081 -14.766 24.277 28.866 hybrid contribution 1.972 0.465 -1.299 2.406 sum -3.109 -14.301 22.978 27.243 Atomic orbital electron populations 1.22277 0.86480 1.05792 1.06895 1.21490 0.98900 0.97600 0.78855 0.84221 1.20979 0.80057 0.84456 0.85580 1.90771 1.39126 1.28283 1.87144 1.45782 1.53059 1.32397 1.04431 1.21397 0.99499 0.96323 0.81657 1.23609 0.98147 0.83283 0.94494 0.88053 1.23138 1.04300 0.97626 0.92195 1.22392 1.03458 0.91575 0.97994 1.23104 0.96184 0.94139 0.81792 1.22581 0.92629 0.92936 0.92469 1.45916 1.05292 1.65006 1.21290 1.19911 0.97854 1.29119 0.95000 0.93346 1.27148 1.02439 0.97497 1.00369 1.71014 1.32148 1.53733 1.04042 0.83330 0.73147 0.76836 0.74124 1.19504 1.23105 1.18067 1.23298 0.94769 0.94443 0.91305 1.88757 1.77369 1.37657 1.24346 1.50236 1.18381 1.25095 1.22132 1.26607 0.99683 0.87244 0.89069 1.70569 1.07995 1.29468 1.22194 1.26560 0.97610 0.89554 0.97172 1.77992 1.04068 1.26749 1.09129 0.89595 0.88868 0.86554 0.74279 0.88240 0.92299 0.87085 0.89562 0.90490 0.90781 0.92997 0.93670 0.94404 0.92592 0.92644 0.73398 0.74299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 8.75 71.98 0.63 0.23 16 2 C 0.14 1.62 3.77 44.25 0.17 1.79 16 3 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.50 8.67 7.22 87.66 0.63 9.30 16 5 O -0.57 -15.63 16.42 -3.03 -0.05 -15.68 16 6 N -0.70 -9.24 5.45 -463.06 -2.52 -11.76 16 7 C 0.13 2.08 5.42 86.38 0.47 2.55 16 8 C 0.06 1.03 3.38 31.30 0.11 1.14 16 9 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 10 C -0.13 -2.25 6.60 31.99 0.21 -2.04 16 11 C -0.12 -3.02 6.46 31.40 0.20 -2.82 16 12 C 0.09 2.75 1.66 -10.82 -0.02 2.74 16 13 C 0.12 4.59 8.20 83.40 0.68 5.28 16 14 N -0.65 -30.48 3.58 -739.06 -2.65 -33.13 16 15 C -0.29 -16.71 11.03 84.04 0.93 -15.79 16 16 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 17 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 18 N -0.96 -61.30 13.70 21.65 0.30 -61.00 16 19 Si 1.10 51.04 25.51 68.60 1.75 52.79 16 20 H -0.27 -11.31 6.97 99.48 0.69 -10.61 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.26 -10.65 5.65 99.48 0.56 -10.09 16 23 C 0.09 3.30 5.12 83.50 0.43 3.73 16 24 O -0.36 -9.20 11.03 -148.98 -1.64 -10.85 16 25 N -0.37 -6.64 3.04 -335.01 -1.02 -7.66 16 26 C 0.27 4.37 11.77 180.36 2.12 6.49 16 27 N -0.57 -11.99 11.19 -204.00 -2.28 -14.28 16 28 C 0.19 3.92 13.03 180.77 2.36 6.28 16 29 N -0.35 -8.19 12.70 -61.25 -0.78 -8.97 16 30 H 0.09 0.08 7.22 -2.38 -0.02 0.07 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.12 -0.16 7.56 -2.39 -0.02 -0.18 16 33 H 0.42 3.46 7.89 -92.70 -0.73 2.73 16 34 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 38 H 0.08 2.09 7.82 -2.39 -0.02 2.08 16 39 H 0.07 2.05 7.81 -2.39 -0.02 2.03 16 40 H 0.05 1.95 7.91 -2.39 -0.02 1.93 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 43 H 0.06 2.09 6.98 -2.39 -0.02 2.08 16 44 H 0.06 2.09 6.08 -2.39 -0.01 2.07 16 45 H 0.25 1.69 7.32 -2.91 -0.02 1.67 16 46 H 0.24 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -85.88 376.75 0.56 -85.32 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.07 Total: 10.70 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 9.38 Total: 14.51 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -8.95 Total: -136.80 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.69 Total: -26.52 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.75 Total: 52.79 kcal Total: -85.88 0.56 -85.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673533315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.722 kcal (2) G-P(sol) polarization free energy of solvation -85.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds