Wall clock time and date at job start Tue Mar 31 2020 18:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47499 * 120.00502 * 2 1 3 5 5 O 1.21273 * 120.00067 * 120.00084 * 4 2 1 6 6 N 1.34779 * 119.99764 * 299.99609 * 4 2 1 7 7 C 1.46497 * 119.99883 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09000 * 110.51766 * 307.79390 * 8 7 6 10 10 C 1.55059 * 110.58197 * 184.99868 * 8 7 6 11 11 C 1.55030 * 102.12935 * 204.93083 * 10 8 7 12 12 C 1.53322 * 103.78366 * 20.86698 * 11 10 8 13 13 C 1.52652 * 115.56243 * 133.64213 * 12 11 10 14 14 N 1.47222 * 87.77949 * 90.04529 * 13 12 11 15 15 C 1.36932 * 135.96431 * 206.41651 * 14 13 12 16 16 H 1.08004 * 120.00066 * 6.79093 * 15 14 13 17 17 C 1.38808 * 119.99884 * 186.79269 * 15 14 13 18 18 N 1.31629 * 119.99858 * 172.34298 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 352.34104 * 17 15 14 20 20 H 1.48502 * 109.47471 * 175.35206 * 19 17 15 21 21 H 1.48504 * 109.47042 * 55.35242 * 19 17 15 22 22 H 1.48501 * 109.47081 * 295.35483 * 19 17 15 23 23 C 1.47219 * 88.06699 * 26.66772 * 14 13 12 24 24 O 1.42842 * 108.32807 * 1.60437 * 12 11 10 25 25 N 1.46508 * 109.46945 * 240.00527 * 2 1 3 26 26 C 1.34421 * 126.82005 * 324.99638 * 25 2 1 27 27 N 1.30833 * 108.07455 * 179.97438 * 26 25 2 28 28 C 1.33240 * 109.82993 * 359.97438 * 27 26 25 29 29 N 1.30712 * 108.94470 * 359.75340 * 28 27 26 30 30 H 1.09009 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47020 * 299.99155 * 1 2 3 32 32 H 1.08997 * 109.47492 * 59.99571 * 1 2 3 33 33 H 0.96994 * 119.99774 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47350 * 60.00170 * 7 6 4 35 35 H 1.09006 * 109.47215 * 300.00587 * 7 6 4 36 36 H 1.09008 * 110.87007 * 86.77543 * 10 8 7 37 37 H 1.08998 * 111.05506 * 323.17713 * 10 8 7 38 38 H 1.08993 * 110.56812 * 262.29252 * 11 10 8 39 39 H 1.08997 * 110.68568 * 139.49791 * 11 10 8 40 40 H 1.09002 * 113.50148 * 335.31600 * 13 12 11 41 41 H 1.09005 * 113.56183 * 204.78256 * 13 12 11 42 42 H 0.96991 * 120.00047 * 4.89162 * 18 17 15 43 43 H 1.09004 * 113.49685 * 88.06070 * 23 14 13 44 44 H 1.08993 * 113.49991 * 218.60291 * 23 14 13 45 45 H 1.07994 * 125.96850 * 359.97438 * 26 25 2 46 46 H 1.08000 * 125.53027 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9410 3.6506 8 6 1.6844 -0.2201 4.9000 9 1 1.9209 0.8428 4.8511 10 6 2.2873 -0.8546 6.1799 11 6 1.2301 -0.4895 7.2535 12 6 -0.0354 -0.2021 6.4370 13 6 -1.3158 -0.8510 6.9564 14 7 -1.5337 0.3601 7.7646 15 6 -2.1823 0.6607 8.9325 16 1 -2.6030 -0.1304 9.5357 17 6 -2.2993 1.9820 9.3412 18 7 -3.0488 2.2858 10.3798 19 14 -1.3931 3.3292 8.4175 20 1 -1.7691 4.6523 8.9771 21 1 -1.7610 3.2772 6.9797 22 1 0.0713 3.1289 8.5612 23 6 -0.7543 1.1077 6.7641 24 8 0.2611 -0.4208 5.0569 25 7 2.0183 -0.6905 -1.1963 26 6 1.4557 -1.7517 -1.8000 27 7 2.1931 -2.0691 -2.8331 28 6 3.2298 -1.2367 -2.9212 29 7 3.1633 -0.3711 -1.9441 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1489 0.5384 2.5435 34 1 3.2848 -0.9415 3.6507 35 1 1.8311 -1.9686 3.6504 36 1 3.2525 -0.4072 6.4175 37 1 2.3777 -1.9358 6.0758 38 1 1.5377 0.3972 7.8077 39 1 1.0659 -1.3263 7.9323 40 1 -1.1386 -1.7458 7.5531 41 1 -2.0719 -1.0010 6.1856 42 1 -3.4622 1.5810 10.9023 43 1 -1.3574 1.4899 5.9405 44 1 -0.1031 1.8661 7.1986 45 1 0.5528 -2.2546 -1.4869 46 1 3.9983 -1.2695 -3.6794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673533326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:53 Heat of formation + Delta-G solvation = 85.041347 kcal Electronic energy + Delta-G solvation = -28886.058077 eV Core-core repulsion = 24815.584763 eV Total energy + Delta-G solvation = -4070.473313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43383 -40.52298 -39.95384 -37.14696 -35.44665 -34.96400 -32.42515 -32.17033 -31.66520 -30.66992 -29.38423 -27.27594 -25.68432 -25.62387 -24.01681 -22.43075 -22.15065 -21.65705 -21.40182 -20.50844 -19.26011 -18.25240 -17.58322 -17.49489 -16.82650 -16.20797 -15.89383 -15.76190 -15.54140 -15.22294 -14.75314 -14.64197 -14.56671 -14.20087 -13.83316 -13.47988 -13.28105 -13.18033 -13.08063 -12.98523 -12.76363 -12.44549 -12.16736 -11.94809 -11.69278 -11.54081 -11.36299 -11.18318 -10.79146 -10.76161 -10.51818 -10.43203 -10.31864 -10.04834 -9.96833 -9.83512 -9.50756 -9.30320 -8.95767 -8.92192 -7.25393 -6.41186 -3.32542 1.26302 1.76326 2.07900 2.67956 2.77266 3.30559 3.34824 3.56396 3.65737 3.87071 4.01426 4.11107 4.23316 4.44052 4.49909 4.50384 4.57080 4.73818 4.77548 4.82268 4.84548 4.88474 5.01141 5.02016 5.24448 5.29834 5.34716 5.36738 5.46000 5.67360 5.76360 5.88357 5.96714 6.04909 6.12108 6.12663 6.13020 6.20232 6.22169 6.27728 6.40385 6.44439 6.97445 6.99426 7.18037 7.68538 7.78213 8.14752 8.88346 9.40095 10.25074 11.11617 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.002285 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.688193 B =12251.971738 C =12658.355147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.133 0.867 4 C 0.503 3.497 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.129 3.871 8 C 0.061 3.939 9 H 0.078 0.922 10 C -0.146 4.146 11 C -0.114 4.114 12 C 0.060 3.940 13 C 0.133 3.867 14 N -0.619 5.619 15 C -0.303 4.303 16 H 0.085 0.915 17 C -0.024 4.024 18 N -0.931 5.931 19 Si 1.071 2.929 20 H -0.294 1.294 21 H -0.286 1.286 22 H -0.294 1.294 23 C 0.090 3.910 24 O -0.356 6.356 25 N -0.363 5.363 26 C 0.271 3.729 27 N -0.546 5.546 28 C 0.200 3.800 29 N -0.315 5.315 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.262 0.738 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.215 0.785 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.261 -4.573 -21.224 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.150 0.850 4 C 0.286 3.714 5 O -0.400 6.400 6 N -0.368 5.368 7 C 0.006 3.994 8 C 0.003 3.997 9 H 0.096 0.904 10 C -0.184 4.184 11 C -0.151 4.151 12 C 0.020 3.980 13 C 0.007 3.993 14 N -0.350 5.350 15 C -0.429 4.429 16 H 0.102 0.898 17 C -0.223 4.223 18 N -0.573 5.573 19 Si 0.904 3.096 20 H -0.221 1.221 21 H -0.213 1.213 22 H -0.223 1.223 23 C -0.036 4.036 24 O -0.274 6.274 25 N -0.153 5.153 26 C -0.026 4.026 27 N -0.273 5.273 28 C -0.103 4.103 29 N -0.142 5.142 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.232 0.768 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.147 -3.318 -21.346 24.783 hybrid contribution -0.608 -1.268 0.545 1.508 sum 11.539 -4.586 -20.801 24.225 Atomic orbital electron populations 1.22216 0.89686 1.04855 1.05461 1.21210 0.96627 0.98010 0.80928 0.84970 1.20549 0.81032 0.85153 0.84674 1.90787 1.37010 1.25736 1.86437 1.45859 1.53496 1.32391 1.05056 1.21496 0.99098 0.97064 0.81725 1.23366 0.83135 0.99111 0.94097 0.90444 1.23140 0.99337 1.01823 0.94082 1.22388 0.92254 1.03160 0.97338 1.23714 0.95508 0.98691 0.80115 1.22363 0.92174 0.91946 0.92838 1.45706 1.63143 1.05012 1.21103 1.20086 1.32622 0.94806 0.95406 0.89780 1.25752 0.99189 0.97037 1.00343 1.70922 1.31562 1.34776 1.20082 0.83686 0.74933 0.75997 0.75014 1.22142 1.21306 1.22267 1.23194 0.93330 0.94450 0.92614 1.88758 1.21613 1.90724 1.26271 1.50056 1.19312 1.24507 1.21467 1.25919 0.99138 0.87855 0.89694 1.70578 1.07156 1.28781 1.20798 1.25996 0.97249 0.89947 0.97123 1.78043 1.02953 1.25135 1.08069 0.90514 0.88469 0.89817 0.75742 0.89937 0.90164 0.90018 0.90167 0.90089 0.89859 0.93162 0.93661 0.92816 0.93109 0.93057 0.76841 0.76627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.75 37.15 0.33 -0.35 16 2 C 0.14 0.99 3.77 -69.08 -0.26 0.73 16 3 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.50 4.89 7.22 -10.98 -0.08 4.81 16 5 O -0.52 -7.46 16.42 5.56 0.09 -7.36 16 6 N -0.72 -5.86 5.45 -60.29 -0.33 -6.19 16 7 C 0.13 1.21 5.41 -4.04 -0.02 1.19 16 8 C 0.06 0.64 3.38 -25.64 -0.09 0.55 16 9 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 10 C -0.15 -1.50 6.60 -24.57 -0.16 -1.66 16 11 C -0.11 -1.61 6.46 -25.49 -0.16 -1.77 16 12 C 0.06 0.99 1.66 -90.66 -0.15 0.84 16 13 C 0.13 2.56 8.20 -8.03 -0.07 2.50 16 14 N -0.62 -14.67 3.66 -184.61 -0.68 -15.34 16 15 C -0.30 -8.48 11.08 -15.06 -0.17 -8.64 16 16 H 0.08 2.48 8.05 -52.48 -0.42 2.05 16 17 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 18 N -0.93 -28.74 13.70 55.49 0.76 -27.98 16 19 Si 1.07 25.84 25.13 -169.99 -4.27 21.57 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.41 6.11 56.52 0.35 -6.06 16 22 H -0.29 -6.62 6.63 56.52 0.37 -6.24 16 23 C 0.09 1.81 5.22 -7.88 -0.04 1.77 16 24 O -0.36 -4.93 11.02 -35.23 -0.39 -5.31 16 25 N -0.36 -3.56 3.04 -57.25 -0.17 -3.73 16 26 C 0.27 2.53 11.77 -90.66 -1.07 1.47 16 27 N -0.55 -6.07 11.19 -15.84 -0.18 -6.24 16 28 C 0.20 2.05 13.03 -91.81 -1.20 0.85 16 29 N -0.32 -3.63 12.70 29.29 0.37 -3.26 16 30 H 0.08 0.31 7.22 -51.92 -0.37 -0.07 16 31 H 0.10 0.30 7.56 -51.93 -0.39 -0.09 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.41 2.51 7.89 -40.82 -0.32 2.19 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.76 8.06 -51.93 -0.42 0.35 16 38 H 0.08 1.21 7.82 -51.93 -0.41 0.81 16 39 H 0.08 1.19 7.81 -51.93 -0.41 0.78 16 40 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.26 7.97 8.73 -40.82 -0.36 7.62 16 43 H 0.05 1.03 7.69 -51.93 -0.40 0.63 16 44 H 0.05 1.05 4.50 -51.93 -0.23 0.82 16 45 H 0.22 1.21 7.32 -52.49 -0.38 0.82 16 46 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -37.41 375.83 -9.15 -46.56 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.79 Total: 0.17 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.23 Total: 1.47 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.22 Total: -62.75 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.30 Total: -12.68 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.27 Total: 21.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.41 -9.15 -46.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673533326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.600 kcal (2) G-P(sol) polarization free energy of solvation -37.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds