Wall clock time and date at job start Tue Mar 31 2020 18:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47499 * 120.00502 * 2 1 3 5 5 O 1.21273 * 120.00067 * 120.00084 * 4 2 1 6 6 N 1.34779 * 119.99764 * 299.99609 * 4 2 1 7 7 C 1.46497 * 119.99883 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09000 * 110.51766 * 307.79390 * 8 7 6 10 10 C 1.55059 * 110.58197 * 184.99868 * 8 7 6 11 11 C 1.55030 * 102.12935 * 204.93083 * 10 8 7 12 12 C 1.53322 * 103.78366 * 20.86698 * 11 10 8 13 13 C 1.52652 * 115.56243 * 133.64213 * 12 11 10 14 14 N 1.47222 * 87.77949 * 90.04529 * 13 12 11 15 15 C 1.36932 * 135.96431 * 206.41651 * 14 13 12 16 16 H 1.08004 * 120.00066 * 6.79093 * 15 14 13 17 17 C 1.38808 * 119.99884 * 186.79269 * 15 14 13 18 18 N 1.31629 * 119.99858 * 172.34298 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 352.34104 * 17 15 14 20 20 H 1.48502 * 109.47471 * 175.35206 * 19 17 15 21 21 H 1.48504 * 109.47042 * 55.35242 * 19 17 15 22 22 H 1.48501 * 109.47081 * 295.35483 * 19 17 15 23 23 C 1.47219 * 88.06699 * 26.66772 * 14 13 12 24 24 O 1.42842 * 108.32807 * 1.60437 * 12 11 10 25 25 N 1.46508 * 109.46945 * 240.00527 * 2 1 3 26 26 C 1.34421 * 126.82005 * 324.99638 * 25 2 1 27 27 N 1.30833 * 108.07455 * 179.97438 * 26 25 2 28 28 C 1.33240 * 109.82993 * 359.97438 * 27 26 25 29 29 N 1.30712 * 108.94470 * 359.75340 * 28 27 26 30 30 H 1.09009 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47020 * 299.99155 * 1 2 3 32 32 H 1.08997 * 109.47492 * 59.99571 * 1 2 3 33 33 H 0.96994 * 119.99774 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47350 * 60.00170 * 7 6 4 35 35 H 1.09006 * 109.47215 * 300.00587 * 7 6 4 36 36 H 1.09008 * 110.87007 * 86.77543 * 10 8 7 37 37 H 1.08998 * 111.05506 * 323.17713 * 10 8 7 38 38 H 1.08993 * 110.56812 * 262.29252 * 11 10 8 39 39 H 1.08997 * 110.68568 * 139.49791 * 11 10 8 40 40 H 1.09002 * 113.50148 * 335.31600 * 13 12 11 41 41 H 1.09005 * 113.56183 * 204.78256 * 13 12 11 42 42 H 0.96991 * 120.00047 * 4.89162 * 18 17 15 43 43 H 1.09004 * 113.49685 * 88.06070 * 23 14 13 44 44 H 1.08993 * 113.49991 * 218.60291 * 23 14 13 45 45 H 1.07994 * 125.96850 * 359.97438 * 26 25 2 46 46 H 1.08000 * 125.53027 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9410 3.6506 8 6 1.6844 -0.2201 4.9000 9 1 1.9209 0.8428 4.8511 10 6 2.2873 -0.8546 6.1799 11 6 1.2301 -0.4895 7.2535 12 6 -0.0354 -0.2021 6.4370 13 6 -1.3158 -0.8510 6.9564 14 7 -1.5337 0.3601 7.7646 15 6 -2.1823 0.6607 8.9325 16 1 -2.6030 -0.1304 9.5357 17 6 -2.2993 1.9820 9.3412 18 7 -3.0488 2.2858 10.3798 19 14 -1.3931 3.3292 8.4175 20 1 -1.7691 4.6523 8.9771 21 1 -1.7610 3.2772 6.9797 22 1 0.0713 3.1289 8.5612 23 6 -0.7543 1.1077 6.7641 24 8 0.2611 -0.4208 5.0569 25 7 2.0183 -0.6905 -1.1963 26 6 1.4557 -1.7517 -1.8000 27 7 2.1931 -2.0691 -2.8331 28 6 3.2298 -1.2367 -2.9212 29 7 3.1633 -0.3711 -1.9441 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1489 0.5384 2.5435 34 1 3.2848 -0.9415 3.6507 35 1 1.8311 -1.9686 3.6504 36 1 3.2525 -0.4072 6.4175 37 1 2.3777 -1.9358 6.0758 38 1 1.5377 0.3972 7.8077 39 1 1.0659 -1.3263 7.9323 40 1 -1.1386 -1.7458 7.5531 41 1 -2.0719 -1.0010 6.1856 42 1 -3.4622 1.5810 10.9023 43 1 -1.3574 1.4899 5.9405 44 1 -0.1031 1.8661 7.1986 45 1 0.5528 -2.2546 -1.4869 46 1 3.9983 -1.2695 -3.6794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673533326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:52 Heat of formation + Delta-G solvation = 57.670786 kcal Electronic energy + Delta-G solvation = -28887.244953 eV Core-core repulsion = 24815.584763 eV Total energy + Delta-G solvation = -4071.660190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.12515 -41.67144 -40.84731 -38.45729 -36.08090 -35.86867 -34.48904 -33.15099 -32.38752 -31.47094 -30.46816 -28.74962 -27.20792 -26.31454 -25.05706 -23.38366 -23.00572 -22.80377 -22.40526 -21.22184 -20.77360 -19.51093 -18.95785 -18.17715 -17.76573 -17.45968 -16.92367 -16.58155 -16.35675 -16.25165 -16.07941 -15.73589 -15.32023 -15.18838 -15.09825 -14.89818 -14.54996 -14.23939 -13.87884 -13.55117 -13.45267 -13.39792 -13.31170 -13.19155 -12.72756 -12.68310 -12.50623 -12.40256 -12.25832 -12.02188 -11.73401 -11.54431 -11.42002 -11.32596 -11.06435 -11.01946 -10.80195 -10.55756 -10.32992 -10.25047 -9.23543 -8.67893 -5.50178 0.56796 1.16618 1.36861 1.37243 1.48111 1.67866 1.97117 2.09454 2.53586 2.56220 2.97344 3.23817 3.33948 3.40862 3.45290 3.52103 3.58824 3.65104 3.77673 3.91000 3.95873 4.09906 4.25132 4.37077 4.41295 4.46715 4.57878 4.60048 4.64873 4.65656 4.70025 4.81586 4.82999 4.90568 4.99325 5.06021 5.09462 5.13975 5.21881 5.23572 5.28354 5.44819 5.77727 5.92030 6.00359 6.34921 6.66855 7.01058 7.07581 7.28947 8.22617 8.87888 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.002285 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.688193 B =12251.971738 C =12658.355147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.149 0.851 4 C 0.505 3.495 5 O -0.574 6.574 6 N -0.704 5.704 7 C 0.135 3.865 8 C 0.062 3.938 9 H 0.096 0.904 10 C -0.135 4.135 11 C -0.118 4.118 12 C 0.088 3.912 13 C 0.126 3.874 14 N -0.650 5.650 15 C -0.289 4.289 16 H 0.051 0.949 17 C -0.085 4.085 18 N -0.969 5.969 19 Si 1.108 2.892 20 H -0.306 1.306 21 H -0.258 1.258 22 H -0.267 1.267 23 C 0.082 3.918 24 O -0.358 6.358 25 N -0.368 5.368 26 C 0.268 3.732 27 N -0.575 5.575 28 C 0.194 3.806 29 N -0.347 5.347 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.419 0.581 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.246 0.754 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.245 0.755 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 -4.053 -23.435 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.166 0.834 4 C 0.289 3.711 5 O -0.453 6.453 6 N -0.357 5.357 7 C 0.012 3.988 8 C 0.004 3.996 9 H 0.114 0.886 10 C -0.173 4.173 11 C -0.156 4.156 12 C 0.047 3.953 13 C 0.000 4.000 14 N -0.380 5.380 15 C -0.416 4.416 16 H 0.069 0.931 17 C -0.277 4.277 18 N -0.614 5.614 19 Si 0.934 3.066 20 H -0.234 1.234 21 H -0.183 1.183 22 H -0.193 1.193 23 C -0.043 4.043 24 O -0.276 6.276 25 N -0.158 5.158 26 C -0.028 4.028 27 N -0.302 5.302 28 C -0.109 4.109 29 N -0.174 5.174 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.257 0.743 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.260 0.740 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 13.776 -2.815 -23.583 27.457 hybrid contribution -1.139 -1.572 1.216 2.290 sum 12.637 -4.387 -22.368 26.063 Atomic orbital electron populations 1.22266 0.87197 1.05442 1.06767 1.21461 0.98346 0.97944 0.78846 0.83371 1.20967 0.80073 0.84449 0.85568 1.90770 1.39345 1.28029 1.87134 1.45780 1.53062 1.32417 1.04440 1.21386 0.99510 0.96349 0.81604 1.23574 0.81020 1.00397 0.94568 0.88589 1.23141 0.99217 1.02748 0.92205 1.22414 0.92373 1.02764 0.98067 1.23138 0.95073 0.95166 0.81916 1.22552 0.94061 0.90933 0.92456 1.45718 1.63395 1.07954 1.20953 1.19919 1.31197 0.93928 0.96587 0.93137 1.27145 0.99873 0.99901 1.00780 1.71033 1.34140 1.34366 1.21836 0.83287 0.75399 0.72617 0.75328 1.23439 1.18328 1.19342 1.23388 0.93282 0.96075 0.91514 1.88747 1.24081 1.90523 1.24221 1.50225 1.18882 1.24776 1.21889 1.26530 0.99620 0.87555 0.89111 1.70581 1.07963 1.29679 1.22018 1.26586 0.97572 0.89358 0.97363 1.77961 1.04254 1.26272 1.08940 0.90314 0.86917 0.88697 0.74284 0.89061 0.91385 0.87440 0.89213 0.90732 0.90410 0.92814 0.93214 0.94464 0.92647 0.92859 0.73960 0.74124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.75 71.98 0.63 -0.17 16 2 C 0.14 1.64 3.77 44.24 0.17 1.80 16 3 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.50 8.63 7.22 87.66 0.63 9.27 16 5 O -0.57 -15.54 16.42 -3.01 -0.05 -15.59 16 6 N -0.70 -9.21 5.45 -463.05 -2.52 -11.73 16 7 C 0.14 2.07 5.41 86.38 0.47 2.53 16 8 C 0.06 1.02 3.38 31.30 0.11 1.13 16 9 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 10 C -0.14 -2.23 6.60 31.99 0.21 -2.02 16 11 C -0.12 -3.00 6.46 31.40 0.20 -2.80 16 12 C 0.09 2.65 1.66 -10.82 -0.02 2.63 16 13 C 0.13 4.65 8.20 83.40 0.68 5.34 16 14 N -0.65 -30.26 3.66 -739.09 -2.70 -32.97 16 15 C -0.29 -16.46 11.08 84.03 0.93 -15.53 16 16 H 0.05 3.12 8.05 -2.91 -0.02 3.10 16 17 C -0.09 -5.00 5.50 84.86 0.47 -4.54 16 18 N -0.97 -61.73 13.70 21.65 0.30 -61.43 16 19 Si 1.11 51.17 25.13 68.60 1.72 52.89 16 20 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 21 H -0.26 -10.62 6.11 99.48 0.61 -10.01 16 22 H -0.27 -11.02 6.63 99.48 0.66 -10.36 16 23 C 0.08 3.09 5.22 83.50 0.44 3.53 16 24 O -0.36 -8.58 11.02 -148.98 -1.64 -10.22 16 25 N -0.37 -6.61 3.04 -335.03 -1.02 -7.63 16 26 C 0.27 4.62 11.77 180.36 2.12 6.74 16 27 N -0.57 -12.23 11.19 -204.01 -2.28 -14.51 16 28 C 0.19 3.81 13.03 180.77 2.36 6.17 16 29 N -0.35 -7.66 12.70 -61.25 -0.78 -8.43 16 30 H 0.08 0.39 7.22 -2.38 -0.02 0.38 16 31 H 0.11 0.24 7.56 -2.39 -0.02 0.22 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.42 3.47 7.89 -92.71 -0.73 2.74 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.09 1.36 8.06 -2.39 -0.02 1.34 16 38 H 0.07 2.01 7.82 -2.39 -0.02 1.99 16 39 H 0.08 2.06 7.81 -2.39 -0.02 2.04 16 40 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.25 15.79 8.73 -92.72 -0.81 14.98 16 43 H 0.06 2.05 7.69 -2.38 -0.02 2.03 16 44 H 0.05 2.00 4.50 -2.39 -0.01 1.99 16 45 H 0.24 2.24 7.32 -2.91 -0.02 2.21 16 46 H 0.24 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -84.15 375.83 0.51 -83.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.09 Total: 11.89 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 9.39 Total: 14.08 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -9.01 Total: -136.70 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.69 Total: -25.81 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.72 Total: 52.89 kcal Total: -84.15 0.51 -83.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673533326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.315 kcal (2) G-P(sol) polarization free energy of solvation -84.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds