Wall clock time and date at job start Tue Mar 31 2020 19:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47298 * 2 1 4 4 N 1.28714 * 126.03995 * 275.10754 * 3 2 1 5 5 N 1.28513 * 110.64145 * 180.27796 * 4 3 2 6 6 C 1.33319 * 109.43652 * 359.70989 * 5 4 3 7 7 C 1.37002 * 106.37645 * 0.02562 * 6 5 4 8 8 C 1.47233 * 127.19216 * 180.02562 * 7 6 5 9 9 O 1.21620 * 119.99847 * 174.91684 * 8 7 6 10 10 N 1.34771 * 120.00085 * 355.18954 * 8 7 6 11 11 C 1.46493 * 120.00336 * 184.87651 * 10 8 7 12 12 C 1.52998 * 109.47555 * 180.02562 * 11 10 8 13 13 H 1.09005 * 110.29381 * 307.14193 * 12 11 10 14 14 C 1.54553 * 110.33210 * 184.99740 * 12 11 10 15 15 C 1.54745 * 104.07115 * 217.47347 * 14 12 11 16 16 C 1.53462 * 103.72165 * 0.76870 * 15 14 12 17 17 C 1.52886 * 115.57970 * 252.69299 * 16 15 14 18 18 N 1.47779 * 85.78846 * 219.73517 * 17 16 15 19 19 C 1.36933 * 134.40881 * 203.85383 * 18 17 16 20 20 H 1.08001 * 120.00393 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99547 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00410 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47257 * 90.00227 * 23 21 19 25 25 H 1.48495 * 109.47291 * 210.00569 * 23 21 19 26 26 H 1.48508 * 109.46910 * 330.00162 * 23 21 19 27 27 C 1.47791 * 91.19333 * 23.87249 * 18 17 16 28 28 O 1.43249 * 106.26573 * 22.70954 * 16 15 14 29 29 H 1.08998 * 109.47287 * 59.99912 * 1 2 3 30 30 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47292 * 300.00064 * 1 2 3 32 32 H 1.08996 * 109.47292 * 239.99936 * 2 1 3 33 33 H 1.08998 * 109.47287 * 120.00088 * 2 1 3 34 34 H 1.07999 * 126.81301 * 179.97438 * 6 5 4 35 35 H 0.97007 * 119.99992 * 4.87598 * 10 8 7 36 36 H 1.09005 * 109.46948 * 299.99677 * 11 10 8 37 37 H 1.09000 * 109.47246 * 59.99987 * 11 10 8 38 38 H 1.08997 * 110.50511 * 336.12211 * 14 12 11 39 39 H 1.08999 * 110.50684 * 98.69189 * 14 12 11 40 40 H 1.08992 * 110.57226 * 119.32710 * 15 14 12 41 41 H 1.09006 * 110.57044 * 242.05858 * 15 14 12 42 42 H 1.09006 * 113.82237 * 333.95051 * 17 16 15 43 43 H 1.08996 * 113.82367 * 105.51763 * 17 16 15 44 44 H 0.96998 * 120.00234 * 179.97438 * 22 21 19 45 45 H 1.08998 * 113.82218 * 221.90876 * 27 18 17 46 46 H 1.09001 * 113.93352 * 90.35186 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1834 2.1261 -1.0367 5 7 2.6305 3.2821 -0.6973 6 6 2.7714 3.3319 0.6275 7 6 2.3768 2.1096 1.1041 8 6 2.3484 1.6689 2.5087 9 8 1.8851 0.5816 2.7955 10 7 2.8306 2.4726 3.4770 11 6 2.9011 1.9931 4.8594 12 6 3.4810 3.0924 5.7517 13 1 4.4267 3.4502 5.3445 14 6 3.6810 2.5660 7.1910 15 6 3.3090 3.7712 8.0875 16 6 2.9138 4.8630 7.0841 17 6 3.9169 6.0055 6.9225 18 7 2.7343 6.8894 6.8582 19 6 2.4912 8.1274 6.3260 20 1 1.5104 8.5707 6.4156 21 6 3.5054 8.8128 5.6713 22 7 4.7005 8.2725 5.5617 23 14 3.1740 10.5020 4.9459 24 1 3.4658 11.5436 5.9633 25 1 4.0434 10.7108 3.7603 26 1 1.7492 10.5944 4.5373 27 6 1.9188 5.9037 7.5982 28 8 2.5411 4.1844 5.8789 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1269 4.1693 1.2095 35 1 3.1311 3.3687 3.2586 36 1 1.9003 1.7348 5.2058 37 1 3.5406 1.1117 4.9062 38 1 3.0154 1.7252 7.3860 39 1 4.7193 2.2750 7.3503 40 1 2.4676 3.5224 8.7340 41 1 4.1672 4.0860 8.6814 42 1 4.5422 6.1698 7.8001 43 1 4.4861 5.9635 5.9939 44 1 5.4091 8.7512 5.1039 45 1 0.9103 5.7814 7.2032 46 1 1.9396 6.0357 8.6800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688152219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:20 Heat of formation + Delta-G solvation = 79.725131 kcal Electronic energy + Delta-G solvation = -29234.261734 eV Core-core repulsion = 25163.557892 eV Total energy + Delta-G solvation = -4070.703842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46249 -40.14897 -39.44365 -36.54846 -35.74617 -34.56710 -32.18602 -32.05978 -31.55662 -31.03330 -29.29709 -27.01777 -25.26312 -24.99600 -24.30784 -23.46377 -22.15748 -21.54838 -21.17578 -20.38029 -19.07404 -18.30609 -17.06758 -16.73574 -16.62761 -16.51955 -15.91938 -15.23546 -15.08011 -14.94775 -14.84753 -14.34333 -14.26230 -14.00520 -13.78770 -13.24439 -13.19174 -13.01096 -12.60561 -12.57276 -12.42129 -12.22578 -11.91919 -11.64262 -11.51269 -11.29974 -11.15264 -11.10791 -10.98842 -10.82284 -10.44647 -10.43109 -10.29522 -10.13665 -9.77117 -9.70739 -9.52296 -9.26185 -8.97251 -8.82272 -6.89334 -5.76735 -3.08282 0.74698 1.86521 2.15874 2.88698 2.89888 3.40247 3.45755 3.47420 3.94749 4.12481 4.25765 4.44753 4.50849 4.52583 4.63025 4.77596 4.81559 4.84604 5.04787 5.11486 5.16611 5.20118 5.20880 5.29161 5.48087 5.48711 5.54037 5.56848 5.64132 5.69455 5.81599 5.87239 5.96505 6.09443 6.19751 6.21118 6.22265 6.34999 6.47441 6.58710 6.93199 7.16174 7.18721 7.45504 7.61245 7.81792 7.97288 8.19253 9.04369 9.70745 10.57333 11.40518 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.003259 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.863634 B = 8588.822852 C =10574.684436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.254 5.254 4 N -0.061 5.061 5 N -0.272 5.272 6 C 0.008 3.992 7 C -0.072 4.072 8 C 0.598 3.402 9 O -0.542 6.542 10 N -0.702 5.702 11 C 0.132 3.868 12 C 0.059 3.941 13 H 0.078 0.922 14 C -0.142 4.142 15 C -0.140 4.140 16 C 0.057 3.943 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.129 3.871 28 O -0.333 6.333 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.202 0.798 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.253 0.747 45 H 0.051 0.949 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -19.319 -3.169 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.052 5.052 4 N -0.041 5.041 5 N -0.135 5.135 6 C -0.152 4.152 7 C -0.206 4.206 8 C 0.382 3.618 9 O -0.420 6.420 10 N -0.353 5.353 11 C 0.009 3.991 12 C 0.000 4.000 13 H 0.096 0.904 14 C -0.181 4.181 15 C -0.179 4.179 16 C 0.016 3.984 17 C 0.028 3.972 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.003 3.997 28 O -0.252 6.252 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.219 0.781 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.121 -19.692 -4.825 20.513 hybrid contribution 0.295 1.339 0.878 1.628 sum -2.826 -18.352 -3.947 18.983 Atomic orbital electron populations 1.22088 0.92624 1.03998 1.03554 1.22396 0.96908 0.75728 1.06511 1.47882 1.40121 1.13505 1.03661 1.78248 1.15885 0.98186 1.11823 1.74937 1.15079 1.10798 1.12672 1.24059 1.02008 0.97134 0.92031 1.21924 1.12872 0.94744 0.91057 1.16623 0.78173 0.84437 0.82608 1.90775 1.46227 1.21951 1.83085 1.45634 1.63811 1.18136 1.07734 1.21559 1.02665 0.95974 0.78918 1.23235 0.93708 0.87743 0.95298 0.90401 1.22869 1.02328 0.98879 0.94010 1.22733 1.01926 0.94771 0.98447 1.23744 0.99403 0.91481 0.83737 1.22585 0.90539 0.83850 1.00258 1.45875 1.07527 1.17306 1.62405 1.19001 0.96359 0.91268 1.28069 0.90277 1.24736 0.95613 0.98767 1.01185 1.69799 1.01784 1.37952 1.47444 0.86140 0.77408 0.83874 0.78480 1.21704 1.21566 1.20607 1.22511 0.95520 0.86484 0.95213 1.89007 1.51455 1.41752 1.42943 0.91510 0.89563 0.91283 0.87689 0.85985 0.78143 0.75075 0.90106 0.89893 0.90750 0.90418 0.90890 0.90320 0.94819 0.90516 0.93712 0.93060 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.24 37.15 0.38 -0.88 16 2 C 0.10 0.89 6.70 -4.05 -0.03 0.86 16 3 N -0.25 -3.04 3.39 -57.38 -0.19 -3.23 16 4 N -0.06 -0.84 13.14 60.35 0.79 -0.05 16 5 N -0.27 -4.02 12.35 30.47 0.38 -3.64 16 6 C 0.01 0.11 11.54 -17.35 -0.20 -0.09 16 7 C -0.07 -0.90 6.98 -82.33 -0.57 -1.47 16 8 C 0.60 7.49 7.79 -12.61 -0.10 7.39 16 9 O -0.54 -7.55 14.83 5.26 0.08 -7.47 16 10 N -0.70 -8.22 5.54 -61.45 -0.34 -8.56 16 11 C 0.13 1.48 5.28 -4.05 -0.02 1.46 16 12 C 0.06 0.75 3.33 -25.92 -0.09 0.66 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.14 -1.55 6.65 -25.00 -0.17 -1.71 16 15 C -0.14 -1.85 6.49 -25.57 -0.17 -2.01 16 16 C 0.06 1.02 1.28 -90.66 -0.12 0.91 16 17 C 0.15 3.43 6.99 -3.40 -0.02 3.41 16 18 N -0.60 -15.30 3.71 -183.56 -0.68 -15.98 16 19 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -26.74 11.40 55.49 0.63 -26.11 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 C 0.13 2.59 8.47 -3.40 -0.03 2.56 16 28 O -0.33 -5.82 11.13 -35.23 -0.39 -6.21 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 1.06 6.31 -51.93 -0.33 0.74 16 34 H 0.20 2.08 7.56 -52.49 -0.40 1.68 16 35 H 0.41 4.70 7.50 -40.82 -0.31 4.40 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 7.87 -51.93 -0.41 0.29 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 41 H 0.08 0.99 7.84 -51.93 -0.41 0.59 16 42 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 43 H 0.08 1.91 7.19 -51.93 -0.37 1.53 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -34.26 382.21 -7.21 -41.46 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.83 Total: 2.46 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.39 Total: 4.50 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.59 Total: -57.57 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.31 Total: -13.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.26 -7.21 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688152219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.188 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds