Wall clock time and date at job start Tue Mar 31 2020 18:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47119 * 2 1 4 4 C 1.50694 * 109.47142 * 239.99989 * 2 1 3 5 5 O 1.21282 * 120.00054 * 240.00251 * 4 2 1 6 6 N 1.34778 * 120.00238 * 59.99564 * 4 2 1 7 7 C 1.46500 * 120.00082 * 179.97438 * 6 4 2 8 8 H 1.08997 * 112.90880 * 23.75375 * 7 6 4 9 9 C 1.53781 * 113.61265 * 155.00214 * 7 6 4 10 10 C 1.53780 * 87.08150 * 139.98123 * 9 7 6 11 11 H 1.08998 * 113.61234 * 89.20271 * 10 9 7 12 12 N 1.46905 * 113.61594 * 220.02007 * 10 9 7 13 13 C 1.46901 * 110.99870 * 205.00180 * 12 10 9 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00024 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.37102 * 120.00095 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99386 * 359.97438 * 17 16 14 19 19 C 1.38941 * 120.00393 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99786 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47191 * 60.00031 * 21 19 17 23 23 H 1.48504 * 109.47312 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47299 * 300.00334 * 21 19 17 25 25 C 1.53782 * 87.08315 * 334.56670 * 10 9 7 26 26 N 1.46500 * 109.47154 * 119.99956 * 2 1 3 27 27 C 1.34948 * 126.03882 * 34.71283 * 26 2 1 28 28 C 1.35320 * 107.74536 * 179.83885 * 27 26 2 29 29 C 1.39870 * 107.92103 * 0.42870 * 28 27 26 30 30 N 1.30841 * 108.20093 * 359.73429 * 29 28 27 31 31 H 1.08994 * 109.47197 * 59.99675 * 1 2 3 32 32 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46937 * 299.99782 * 1 2 3 34 34 H 0.97003 * 119.99721 * 0.02562 * 6 4 2 35 35 H 1.09009 * 113.61519 * 25.43395 * 9 7 6 36 36 H 1.09001 * 113.69596 * 254.54167 * 9 7 6 37 37 H 1.00901 * 110.99869 * 81.04892 * 12 10 9 38 38 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 39 39 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 40 40 H 0.96997 * 120.00713 * 359.97438 * 16 14 13 41 41 H 0.97001 * 119.99428 * 179.97438 * 20 19 17 42 42 H 1.09003 * 113.61671 * 139.97679 * 25 10 9 43 43 H 1.08998 * 113.61812 * 270.88792 * 25 10 9 44 44 H 1.07998 * 126.12351 * 0.02562 * 27 26 2 45 45 H 1.08001 * 126.04000 * 180.16127 * 28 27 26 46 46 H 1.07991 * 125.89840 * 179.75921 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 1 2.4404 -1.9863 -3.4666 9 6 1.3127 -0.7234 -4.8910 10 6 2.6149 -0.6166 -5.7021 11 1 2.9737 -1.5739 -6.0800 12 7 2.5811 0.4279 -6.7346 13 6 3.5239 0.1258 -7.8200 14 6 3.4617 1.2170 -8.8575 15 8 2.7060 2.1538 -8.7078 16 7 4.2450 1.1513 -9.9522 17 6 4.1881 2.1438 -10.8964 18 1 3.5152 2.9779 -10.7631 19 6 4.9961 2.0764 -12.0248 20 7 5.8145 1.0611 -12.1872 21 14 4.9180 3.4282 -13.3116 22 1 5.2800 4.7266 -12.6882 23 1 5.8707 3.1227 -14.4090 24 1 3.5407 3.5099 -13.8609 25 6 3.2981 -0.1718 -4.3981 26 7 2.0184 -0.6906 1.1962 27 6 1.4373 -1.7525 1.7927 28 6 2.1967 -2.0927 2.8598 29 6 3.2736 -1.2023 2.9231 30 7 3.1677 -0.3614 1.9264 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1493 0.5389 -2.5436 35 1 0.7391 0.2030 -4.8621 36 1 0.7050 -1.5895 -5.1530 37 1 2.7671 1.3361 -6.3364 38 1 4.5348 0.0655 -7.4168 39 1 3.2578 -0.8269 -8.2777 40 1 4.8491 0.4020 -10.0722 41 1 6.3782 1.0139 -12.9752 42 1 4.2939 -0.5934 -4.2611 43 1 3.2672 0.9054 -4.2344 44 1 0.5305 -2.2447 1.4736 45 1 2.0030 -2.9053 3.5444 46 1 4.0572 -1.2083 3.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690325173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:44 Heat of formation + Delta-G solvation = 7.849374 kcal Electronic energy + Delta-G solvation = -27451.750157 eV Core-core repulsion = 23377.929548 eV Total energy + Delta-G solvation = -4073.820609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29026 -41.17642 -40.20545 -39.43602 -36.14497 -35.73699 -35.40841 -33.60731 -33.18481 -31.03726 -30.35573 -28.45656 -26.66433 -26.46051 -25.76869 -24.04166 -22.27932 -21.99535 -21.47999 -21.04923 -20.54602 -19.88967 -18.63535 -18.25468 -17.81052 -17.17873 -16.91860 -16.44045 -16.34563 -16.09731 -15.85906 -15.70290 -15.36920 -15.02442 -14.74421 -14.49751 -14.43945 -14.30992 -13.79068 -13.56605 -13.50582 -13.45703 -13.40771 -13.27072 -13.14661 -12.83792 -12.63245 -12.43946 -12.18968 -12.14310 -11.96697 -11.81151 -11.65386 -11.50137 -11.18442 -10.37606 -10.33124 -10.15302 -10.02125 -9.52216 -9.26035 -8.46849 -5.95957 0.87623 1.36429 1.39902 1.41893 1.43620 1.52886 1.97001 2.04884 2.14379 2.29512 2.95360 3.20418 3.39562 3.42085 3.56403 3.62384 3.73447 3.80306 3.89941 3.97086 3.98579 4.13638 4.32066 4.45231 4.51894 4.56952 4.61506 4.63286 4.71618 4.76405 4.77630 4.87730 4.96284 5.03914 5.08739 5.09010 5.15080 5.40270 5.47818 5.73074 5.91655 6.05193 6.12732 6.39314 6.43351 6.59445 6.75265 7.06783 7.11883 7.55797 8.10612 8.70184 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.001561 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.529334 B =17932.867736 C =18078.642145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.137 0.863 4 C 0.502 3.498 5 O -0.573 6.573 6 N -0.695 5.695 7 C 0.130 3.870 8 H 0.103 0.897 9 C -0.117 4.117 10 C 0.066 3.934 11 H 0.107 0.893 12 N -0.664 5.664 13 C 0.063 3.937 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.336 4.336 18 H 0.080 0.920 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.178 4.178 26 N -0.365 5.365 27 C 0.061 3.939 28 C -0.285 4.285 29 C 0.037 3.963 30 N -0.340 5.340 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.419 0.581 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.347 0.653 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.197 0.803 45 H 0.169 0.831 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -7.036 27.427 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.154 0.846 4 C 0.287 3.713 5 O -0.452 6.452 6 N -0.348 5.348 7 C 0.024 3.976 8 H 0.121 0.879 9 C -0.155 4.155 10 C -0.045 4.045 11 H 0.125 0.875 12 N -0.295 5.295 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.466 4.466 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.219 4.219 26 N -0.148 5.148 27 C -0.084 4.084 28 C -0.314 4.314 29 C -0.148 4.148 30 N -0.161 5.161 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.257 0.743 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.214 0.786 45 H 0.186 0.814 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.263 -6.351 26.385 29.382 hybrid contribution 1.119 -0.008 -0.137 1.127 sum -10.143 -6.359 26.248 28.849 Atomic orbital electron populations 1.22217 0.87275 1.05134 1.06540 1.21363 0.98426 0.97399 0.79429 0.84559 1.21226 0.79820 0.84402 0.85863 1.90752 1.39041 1.28260 1.87143 1.45801 1.52856 1.31972 1.04123 1.22239 0.95431 0.97077 0.82818 0.87913 1.23373 0.96495 1.03949 0.91724 1.22961 0.97479 0.95654 0.88428 0.87463 1.60060 1.52952 1.05605 1.10893 1.21593 0.96102 0.97261 0.91962 1.20898 0.82931 0.89233 0.84483 1.90482 1.43071 1.38027 1.79370 1.41944 1.37199 1.23133 1.18777 1.19655 1.22964 1.03395 1.00563 0.90197 1.26052 0.95142 1.00176 0.99903 1.69672 1.24876 1.31268 1.30303 0.84977 0.78334 0.77756 0.77197 1.19683 1.19566 1.19654 1.24207 0.99101 1.01413 0.97175 1.48417 1.19301 1.25324 1.21728 1.22973 1.00546 0.90313 0.94601 1.21858 0.98843 1.06687 1.04052 1.24391 0.99919 0.93614 0.96922 1.77290 1.03787 1.26242 1.08771 0.86731 0.90521 0.89089 0.74272 0.88213 0.89447 0.83346 0.91876 0.87712 0.77014 0.91312 0.91954 0.89164 0.78629 0.81375 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.73 71.98 0.63 -0.05 16 2 C 0.14 1.83 3.73 44.24 0.17 2.00 16 3 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.50 9.23 7.22 87.65 0.63 9.86 16 5 O -0.57 -16.60 16.02 -3.04 -0.05 -16.64 16 6 N -0.70 -9.15 5.25 -440.03 -2.31 -11.46 16 7 C 0.13 2.15 4.24 45.52 0.19 2.35 16 8 H 0.10 2.05 7.47 -2.39 -0.02 2.03 16 9 C -0.12 -1.82 7.63 31.12 0.24 -1.59 16 10 C 0.07 1.35 4.18 45.44 0.19 1.54 16 11 H 0.11 2.08 7.87 -2.39 -0.02 2.06 16 12 N -0.66 -19.19 6.24 -492.84 -3.08 -22.27 16 13 C 0.06 2.09 6.01 85.56 0.51 2.61 16 14 C 0.44 20.47 7.82 87.66 0.69 21.16 16 15 O -0.62 -33.86 15.78 -3.07 -0.05 -33.91 16 16 N -0.57 -29.28 5.29 -306.99 -1.62 -30.90 16 17 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 20 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 21 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C -0.18 -3.42 7.49 31.12 0.23 -3.19 16 26 N -0.37 -7.00 3.02 -331.06 -1.00 -8.00 16 27 C 0.06 0.97 10.58 83.54 0.88 1.85 16 28 C -0.29 -4.56 10.80 21.99 0.24 -4.33 16 29 C 0.04 0.71 12.03 85.24 1.03 1.73 16 30 N -0.34 -8.14 12.58 -57.03 -0.72 -8.86 16 31 H 0.11 -0.05 7.56 -2.39 -0.02 -0.06 16 32 H 0.08 0.33 7.15 -2.39 -0.02 0.31 16 33 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.42 2.79 8.15 -92.71 -0.76 2.04 16 35 H 0.10 1.47 8.12 -2.38 -0.02 1.45 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.35 10.53 7.89 -89.69 -0.71 9.82 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 3.12 8.13 -2.39 -0.02 3.10 16 40 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 41 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.71 7.82 -2.39 -0.02 1.69 16 44 H 0.20 1.74 7.25 -2.91 -0.02 1.72 16 45 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.20 2.51 8.06 -2.92 -0.02 2.49 16 Total: -1.00 -81.18 391.35 -0.77 -81.95 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -1.16 Total: 39.22 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.91 Total: 15.49 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -8.44 Total: -130.85 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -81.18 -0.77 -81.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.799 kcal (2) G-P(sol) polarization free energy of solvation -81.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds