Wall clock time and date at job start Tue Mar 31 2020 19:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47423 * 2 1 4 4 C 1.35406 * 126.44409 * 264.69454 * 3 2 1 5 5 C 1.35564 * 107.16660 * 180.25915 * 4 3 2 6 6 N 1.33102 * 108.34757 * 359.97438 * 5 4 3 7 7 C 1.31614 * 109.09658 * 359.97438 * 6 5 4 8 8 C 1.47409 * 125.86738 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00707 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99456 * 0.02703 * 8 7 6 11 11 C 1.47020 * 125.65181 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27310 * 181.02573 * 11 10 8 13 13 C 1.55154 * 102.94591 * 22.18845 * 12 11 10 14 14 H 1.09004 * 110.99851 * 82.57322 * 13 12 11 15 15 N 1.46896 * 111.00775 * 206.42397 * 13 12 11 16 16 C 1.46898 * 111.00111 * 204.99817 * 15 13 12 17 17 C 1.50699 * 109.47330 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99637 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00332 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00416 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99853 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00590 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99368 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00279 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46820 * 60.00168 * 24 22 20 26 26 H 1.48500 * 109.47041 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46875 * 300.00353 * 24 22 20 28 28 C 1.47430 * 125.64720 * 179.71564 * 10 8 7 29 29 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47183 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47210 * 59.99668 * 1 2 3 32 32 H 1.09001 * 109.47050 * 239.99799 * 2 1 3 33 33 H 1.09000 * 109.47210 * 120.00332 * 2 1 3 34 34 H 1.08001 * 126.41213 * 0.22128 * 4 3 2 35 35 H 1.07994 * 125.82202 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.88360 * 300.44203 * 11 10 8 37 37 H 1.09004 * 109.88351 * 61.60290 * 11 10 8 38 38 H 1.09000 * 110.72518 * 140.55752 * 12 11 10 39 39 H 1.09004 * 110.71734 * 263.82960 * 12 11 10 40 40 H 1.00901 * 110.99691 * 81.05225 * 15 13 12 41 41 H 1.09002 * 109.47602 * 300.00581 * 16 15 13 42 42 H 1.09006 * 109.47227 * 60.00301 * 16 15 13 43 43 H 0.97010 * 120.00125 * 359.97438 * 19 17 16 44 44 H 0.97005 * 119.99954 * 179.97438 * 23 22 20 45 45 H 1.09001 * 110.36409 * 274.74440 * 28 10 8 46 46 H 1.08994 * 110.36515 * 37.06729 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3814 2.1059 -1.0846 5 6 2.7745 3.3242 -0.6384 6 7 2.6541 3.3438 0.6870 7 6 2.1973 2.1789 1.0952 8 6 1.9272 1.7991 2.4936 9 8 1.5047 0.6883 2.7513 10 7 2.1484 2.6830 3.4867 11 6 2.6546 4.0529 3.3175 12 6 2.7709 4.6755 4.7248 13 6 2.8610 3.4322 5.6486 14 1 3.8806 3.0489 5.6892 15 7 2.3622 3.7397 6.9956 16 6 2.9564 2.8416 7.9947 17 6 2.4218 3.1861 9.3609 18 8 1.6238 4.0905 9.4895 19 7 2.8302 2.4893 10.4398 20 6 2.3435 2.8024 11.6826 21 1 1.6329 3.6077 11.7971 22 6 2.7642 2.0836 12.7950 23 7 3.6283 1.1035 12.6555 24 14 2.1014 2.5107 14.4884 25 1 0.6249 2.3523 14.4964 26 1 2.7025 1.6032 15.4985 27 1 2.4503 3.9163 14.8164 28 6 1.9169 2.4385 4.9220 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3621 1.7750 -2.1125 35 1 3.1248 4.1398 -1.2536 36 1 3.6343 4.0299 2.8403 37 1 1.9585 4.6332 2.7118 38 1 3.6732 5.2818 4.8050 39 1 1.8857 5.2667 4.9593 40 1 1.3545 3.6983 7.0262 41 1 2.7000 1.8099 7.7542 42 1 4.0403 2.9575 7.9886 43 1 3.4681 1.7658 10.3370 44 1 3.9224 0.6019 13.4320 45 1 0.8774 2.6427 5.1787 46 1 2.1773 1.4118 5.1787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690664041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:44 Heat of formation + Delta-G solvation = 5.303992 kcal Electronic energy + Delta-G solvation = -28235.048837 eV Core-core repulsion = 24161.117852 eV Total energy + Delta-G solvation = -4073.930985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63579 -40.00495 -38.39745 -37.63691 -35.51406 -34.63663 -33.77269 -31.36174 -31.09743 -30.64028 -29.94856 -28.52685 -26.29734 -24.79486 -24.12192 -23.42319 -22.20234 -21.70588 -20.83715 -19.47351 -19.25198 -17.93946 -17.69108 -16.87212 -16.55566 -16.13992 -15.95454 -15.33360 -15.24890 -14.94762 -14.49803 -14.43928 -14.22638 -14.07235 -13.92336 -13.66121 -13.56011 -13.07684 -13.01157 -12.87931 -12.63452 -12.48959 -12.29195 -11.86537 -11.75739 -11.62392 -11.44368 -11.34007 -11.00717 -10.81424 -10.49970 -10.43307 -10.33234 -10.20337 -10.16710 -9.49324 -9.04491 -8.75827 -8.47603 -8.10820 -7.95573 -6.40778 -3.81635 1.05695 2.02249 2.29661 2.85144 3.13875 3.21194 3.26864 3.31322 3.86917 3.91129 4.09949 4.21791 4.28668 4.32157 4.54883 4.58566 4.62136 4.82225 4.90336 5.00008 5.04769 5.13504 5.21186 5.21946 5.25201 5.29890 5.31579 5.52131 5.65983 5.70781 5.78072 5.79096 5.82885 5.93691 5.99917 6.06672 6.12850 6.26091 6.29245 6.54493 7.15523 7.17657 7.43419 7.55955 7.57564 7.85194 8.06602 8.61697 9.18456 9.54788 10.06038 10.76808 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.001914 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.356525 B =14628.352579 C =15295.722318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.414 5.414 4 C -0.030 4.030 5 C -0.030 4.030 6 N -0.440 5.440 7 C 0.145 3.855 8 C 0.617 3.383 9 O -0.543 6.543 10 N -0.591 5.591 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.094 0.906 15 N -0.651 5.651 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.078 3.922 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.353 0.647 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.075 0.925 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -1.227 -29.681 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.094 5.094 4 C -0.168 4.168 5 C -0.183 4.183 6 N -0.162 5.162 7 C -0.114 4.114 8 C 0.404 3.596 9 O -0.420 6.420 10 N -0.323 5.323 11 C -0.011 4.011 12 C -0.162 4.162 13 C -0.035 4.035 14 H 0.113 0.887 15 N -0.282 5.282 16 C -0.085 4.085 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.046 4.046 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.199 0.801 35 H 0.195 0.805 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.493 -0.427 -28.623 28.631 hybrid contribution -0.487 -1.814 -0.159 1.885 sum -0.980 -2.241 -28.782 28.886 Atomic orbital electron populations 1.22064 0.93439 1.03537 1.03024 1.22137 0.96441 0.78698 1.05372 1.45285 1.45065 1.12953 1.06130 1.22936 1.06677 0.94155 0.93076 1.22474 1.07209 0.97501 0.91161 1.70347 1.14970 1.18494 1.12359 1.22503 1.10274 0.88637 0.90029 1.16044 0.78342 0.83706 0.81535 1.90811 1.47337 1.20509 1.83320 1.47947 1.63435 1.14649 1.06319 1.22215 1.00482 0.80843 0.97543 1.22739 1.04116 0.97433 0.91896 1.22877 0.98397 0.93660 0.88529 0.88743 1.60166 1.13445 1.53462 1.01155 1.21769 1.00364 0.94338 0.92029 1.19771 0.86384 0.85873 0.85418 1.90529 1.37619 1.32742 1.85899 1.41853 1.40475 1.31544 1.06043 1.19656 1.23957 1.16743 0.82589 0.87945 1.25273 0.96680 0.95876 1.00140 1.69607 1.31822 1.21070 1.31780 0.85906 0.79007 0.78339 0.80901 1.19916 1.20999 1.19871 1.23282 1.00566 1.01726 0.79027 0.90221 0.91310 0.92269 0.88924 0.87214 0.80117 0.80518 0.90296 0.90430 0.89383 0.89832 0.82622 0.93598 0.89346 0.77430 0.91814 0.90674 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.22 37.16 0.38 -0.74 16 2 C 0.09 0.68 6.17 -4.05 -0.02 0.66 16 3 N -0.41 -3.79 2.76 -114.59 -0.32 -4.11 16 4 C -0.03 -0.21 11.53 -16.93 -0.20 -0.41 16 5 C -0.03 -0.25 11.85 -17.96 -0.21 -0.46 16 6 N -0.44 -4.88 8.67 -11.26 -0.10 -4.98 16 7 C 0.14 1.70 7.65 -154.51 -1.18 0.52 16 8 C 0.62 8.21 7.84 -12.53 -0.10 8.11 16 9 O -0.54 -8.13 14.72 5.28 0.08 -8.06 16 10 N -0.59 -7.22 3.32 -171.65 -0.57 -7.79 16 11 C 0.11 1.17 5.52 -3.07 -0.02 1.15 16 12 C -0.12 -1.28 6.64 -24.90 -0.17 -1.45 16 13 C 0.08 0.93 3.40 -65.45 -0.22 0.71 16 14 H 0.09 1.10 7.83 -51.93 -0.41 0.69 16 15 N -0.65 -10.05 6.04 -105.60 -0.64 -10.68 16 16 C 0.05 0.82 6.03 -4.98 -0.03 0.79 16 17 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 18 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 19 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 C 0.08 0.96 6.51 -2.41 -0.02 0.94 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 33 H 0.11 0.98 6.65 -51.93 -0.35 0.63 16 34 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.82 7.63 -51.93 -0.40 0.42 16 37 H 0.08 0.82 7.75 -51.93 -0.40 0.41 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.35 5.65 7.88 -39.29 -0.31 5.34 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.08 0.93 7.75 -51.93 -0.40 0.52 16 46 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -33.97 384.62 -8.85 -42.82 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.72 Total: 12.71 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -2.11 Total: 12.00 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.96 Total: -65.74 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.17 Total: -23.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.97 -8.85 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690664041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.123 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds