Wall clock time and date at job start Tue Mar 31 2020 19:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47423 * 2 1 4 4 C 1.35406 * 126.44409 * 264.69454 * 3 2 1 5 5 C 1.35564 * 107.16660 * 180.25915 * 4 3 2 6 6 N 1.33102 * 108.34757 * 359.97438 * 5 4 3 7 7 C 1.31614 * 109.09658 * 359.97438 * 6 5 4 8 8 C 1.47409 * 125.86738 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00707 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99456 * 0.02703 * 8 7 6 11 11 C 1.47020 * 125.65181 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27310 * 181.02573 * 11 10 8 13 13 C 1.55154 * 102.94591 * 22.18845 * 12 11 10 14 14 H 1.09004 * 110.99851 * 82.57322 * 13 12 11 15 15 N 1.46896 * 111.00775 * 206.42397 * 13 12 11 16 16 C 1.46898 * 111.00111 * 204.99817 * 15 13 12 17 17 C 1.50699 * 109.47330 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99637 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00332 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00416 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99853 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00590 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99368 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00279 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46820 * 60.00168 * 24 22 20 26 26 H 1.48500 * 109.47041 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46875 * 300.00353 * 24 22 20 28 28 C 1.47430 * 125.64720 * 179.71564 * 10 8 7 29 29 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47183 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47210 * 59.99668 * 1 2 3 32 32 H 1.09001 * 109.47050 * 239.99799 * 2 1 3 33 33 H 1.09000 * 109.47210 * 120.00332 * 2 1 3 34 34 H 1.08001 * 126.41213 * 0.22128 * 4 3 2 35 35 H 1.07994 * 125.82202 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.88360 * 300.44203 * 11 10 8 37 37 H 1.09004 * 109.88351 * 61.60290 * 11 10 8 38 38 H 1.09000 * 110.72518 * 140.55752 * 12 11 10 39 39 H 1.09004 * 110.71734 * 263.82960 * 12 11 10 40 40 H 1.00901 * 110.99691 * 81.05225 * 15 13 12 41 41 H 1.09002 * 109.47602 * 300.00581 * 16 15 13 42 42 H 1.09006 * 109.47227 * 60.00301 * 16 15 13 43 43 H 0.97010 * 120.00125 * 359.97438 * 19 17 16 44 44 H 0.97005 * 119.99954 * 179.97438 * 23 22 20 45 45 H 1.09001 * 110.36409 * 274.74440 * 28 10 8 46 46 H 1.08994 * 110.36515 * 37.06729 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3814 2.1059 -1.0846 5 6 2.7745 3.3242 -0.6384 6 7 2.6541 3.3438 0.6870 7 6 2.1973 2.1789 1.0952 8 6 1.9272 1.7991 2.4936 9 8 1.5047 0.6883 2.7513 10 7 2.1484 2.6830 3.4867 11 6 2.6546 4.0529 3.3175 12 6 2.7709 4.6755 4.7248 13 6 2.8610 3.4322 5.6486 14 1 3.8806 3.0489 5.6892 15 7 2.3622 3.7397 6.9956 16 6 2.9564 2.8416 7.9947 17 6 2.4218 3.1861 9.3609 18 8 1.6238 4.0905 9.4895 19 7 2.8302 2.4893 10.4398 20 6 2.3435 2.8024 11.6826 21 1 1.6329 3.6077 11.7971 22 6 2.7642 2.0836 12.7950 23 7 3.6283 1.1035 12.6555 24 14 2.1014 2.5107 14.4884 25 1 0.6249 2.3523 14.4964 26 1 2.7025 1.6032 15.4985 27 1 2.4503 3.9163 14.8164 28 6 1.9169 2.4385 4.9220 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3621 1.7750 -2.1125 35 1 3.1248 4.1398 -1.2536 36 1 3.6343 4.0299 2.8403 37 1 1.9585 4.6332 2.7118 38 1 3.6732 5.2818 4.8050 39 1 1.8857 5.2667 4.9593 40 1 1.3545 3.6983 7.0262 41 1 2.7000 1.8099 7.7542 42 1 4.0403 2.9575 7.9886 43 1 3.4681 1.7658 10.3370 44 1 3.9224 0.6019 13.4320 45 1 0.8774 2.6427 5.1787 46 1 2.1773 1.4118 5.1787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690664041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:43 Heat of formation + Delta-G solvation = -19.066670 kcal Electronic energy + Delta-G solvation = -28236.105628 eV Core-core repulsion = 24161.117852 eV Total energy + Delta-G solvation = -4074.987776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30852 -40.98854 -40.11143 -38.81085 -36.37904 -35.97627 -35.44898 -33.27380 -32.18179 -31.35309 -30.66992 -29.60946 -27.80134 -26.08422 -25.13718 -24.44328 -23.00279 -22.36476 -21.82752 -21.10074 -20.26616 -19.91840 -18.55931 -17.88887 -17.56326 -17.40024 -17.07222 -16.62663 -16.33106 -16.18381 -15.84516 -15.56917 -15.43188 -15.15366 -14.78479 -14.68763 -14.58101 -14.23090 -14.12682 -13.87260 -13.62859 -13.53237 -13.49269 -13.21311 -13.04066 -12.89288 -12.61959 -12.44562 -12.39710 -12.30048 -12.11873 -11.72993 -11.49756 -11.42528 -11.07743 -10.85489 -10.34832 -10.01615 -9.92753 -9.50281 -9.37765 -8.46181 -5.94957 0.28701 1.29750 1.40359 1.42146 1.53195 1.61094 2.04617 2.07355 2.29637 2.31772 2.85245 3.12385 3.21024 3.43237 3.60755 3.70784 3.72579 3.83517 4.00208 4.01618 4.27026 4.30498 4.31442 4.35962 4.39295 4.43241 4.47302 4.55716 4.63550 4.69391 4.76123 4.76911 4.91514 5.02887 5.09712 5.20704 5.22236 5.28140 5.41318 5.67633 5.87091 5.90806 6.07307 6.24364 6.30628 6.59991 6.67287 6.98825 7.12650 7.56327 8.11326 8.70914 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.001914 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.356525 B =14628.352579 C =15295.722318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.415 5.415 4 C -0.007 4.007 5 C -0.047 4.047 6 N -0.454 5.454 7 C 0.103 3.897 8 C 0.610 3.390 9 O -0.572 6.572 10 N -0.594 5.594 11 C 0.123 3.877 12 C -0.114 4.114 13 C 0.084 3.916 14 H 0.105 0.895 15 N -0.659 5.659 16 C 0.062 3.938 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.081 3.919 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.204 0.796 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.348 0.652 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.070 0.930 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -1.336 -31.942 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.095 5.095 4 C -0.146 4.146 5 C -0.201 4.201 6 N -0.176 5.176 7 C -0.154 4.154 8 C 0.398 3.602 9 O -0.451 6.451 10 N -0.326 5.326 11 C 0.000 4.000 12 C -0.153 4.153 13 C -0.027 4.027 14 H 0.123 0.877 15 N -0.290 5.290 16 C -0.070 4.070 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.043 4.043 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.243 0.757 35 H 0.221 0.779 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.168 0.832 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.296 -0.543 -30.890 30.896 hybrid contribution -0.731 -1.762 0.374 1.944 sum -0.435 -2.305 -30.516 30.606 Atomic orbital electron populations 1.22013 0.93386 1.04187 1.01839 1.22268 0.96445 0.78004 1.06102 1.45509 1.44507 1.13459 1.06064 1.23702 1.03511 0.93198 0.94149 1.23080 1.07527 0.99077 0.90402 1.70271 1.14858 1.18410 1.14099 1.22184 1.13475 0.89883 0.89867 1.16392 0.77860 0.83425 0.82544 1.90778 1.48744 1.21635 1.83990 1.48025 1.63346 1.15204 1.06067 1.22170 1.00479 0.79893 0.97416 1.22707 1.04688 0.96727 0.91169 1.22879 0.98469 0.94502 0.86886 0.87710 1.60188 1.13158 1.53306 1.02395 1.21639 1.01170 0.95612 0.88617 1.20831 0.85058 0.84438 0.87130 1.90497 1.39185 1.34272 1.86940 1.41929 1.40930 1.32124 1.06027 1.19639 1.24986 1.17310 0.84429 0.90223 1.26063 0.96607 0.95461 1.03276 1.69671 1.32123 1.21353 1.32969 0.84978 0.78401 0.78279 0.76622 1.19712 1.19544 1.19652 1.23168 1.00359 1.01245 0.79534 0.88715 0.94808 0.90940 0.85061 0.89548 0.75733 0.77907 0.89951 0.90497 0.87928 0.90173 0.83206 0.91595 0.87254 0.76960 0.91308 0.91184 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.22 71.98 0.74 -1.29 16 2 C 0.09 1.20 6.17 86.38 0.53 1.74 16 3 N -0.41 -6.96 2.76 -516.45 -1.42 -8.39 16 4 C -0.01 -0.07 11.53 83.52 0.96 0.89 16 5 C -0.05 -0.67 11.85 83.88 0.99 0.33 16 6 N -0.45 -9.60 8.67 -189.53 -1.64 -11.25 16 7 C 0.10 2.39 7.65 136.28 1.04 3.43 16 8 C 0.61 16.74 7.84 86.66 0.68 17.42 16 9 O -0.57 -18.05 14.72 -4.03 -0.06 -18.11 16 10 N -0.59 -14.73 3.32 -815.24 -2.71 -17.44 16 11 C 0.12 2.49 5.52 86.73 0.48 2.97 16 12 C -0.11 -2.26 6.64 31.78 0.21 -2.05 16 13 C 0.08 1.95 3.40 46.39 0.16 2.11 16 14 H 0.10 2.26 7.83 -2.39 -0.02 2.25 16 15 N -0.66 -20.04 6.04 -488.01 -2.95 -22.99 16 16 C 0.06 2.08 6.03 85.56 0.52 2.60 16 17 C 0.44 20.78 7.82 87.66 0.69 21.47 16 18 O -0.62 -34.40 15.78 -3.09 -0.05 -34.45 16 19 N -0.57 -29.54 5.29 -306.99 -1.62 -31.16 16 20 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.06 13.05 21.67 0.28 -49.77 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.08 2.02 6.51 86.93 0.57 2.58 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.67 7.82 -2.39 -0.02 0.65 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 0.66 8.13 -2.39 -0.02 0.64 16 33 H 0.09 1.56 6.65 -2.39 -0.02 1.55 16 34 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.08 1.64 7.63 -2.39 -0.02 1.62 16 37 H 0.08 1.59 7.75 -2.38 -0.02 1.57 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.35 11.24 7.88 -89.69 -0.71 10.53 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 3.27 8.09 -2.38 -0.02 3.25 16 43 H 0.40 19.42 7.90 -92.70 -0.73 18.68 16 44 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 45 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 46 H 0.07 1.90 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -76.01 384.62 0.28 -75.73 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.42 Total: 38.93 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 8.84 Total: 33.61 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -10.06 Total: -141.00 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.11 Total: -52.56 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -76.01 0.28 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690664041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.665 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds