Wall clock time and date at job start Tue Mar 31 2020 19:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.35400 * 126.44091 * 265.02655 * 3 2 1 5 5 C 1.35565 * 107.15983 * 179.97438 * 4 3 2 6 6 N 1.33094 * 108.35045 * 0.02562 * 5 4 3 7 7 C 1.31621 * 109.09598 * 359.75674 * 6 5 4 8 8 C 1.47412 * 125.86489 * 180.22971 * 7 6 5 9 9 O 1.21596 * 119.99708 * 180.18083 * 8 7 6 10 10 N 1.34781 * 119.99703 * 0.17968 * 8 7 6 11 11 C 1.47427 * 125.65242 * 0.02735 * 10 8 7 12 12 C 1.54906 * 104.83195 * 204.08835 * 11 10 8 13 13 C 1.55152 * 101.58148 * 322.98820 * 12 11 10 14 14 H 1.08992 * 110.72372 * 277.13821 * 13 12 11 15 15 N 1.46898 * 110.71875 * 154.04067 * 13 12 11 16 16 C 1.46907 * 111.00027 * 154.99900 * 15 13 12 17 17 C 1.50704 * 109.47111 * 180.02562 * 16 15 13 18 18 O 1.21293 * 120.00056 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99888 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00029 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00354 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00218 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99544 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99921 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47440 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46938 * 120.00061 * 24 22 20 27 27 H 1.48503 * 109.46612 * 239.99359 * 24 22 20 28 28 C 1.47017 * 125.64381 * 179.71155 * 10 8 7 29 29 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 34 34 H 1.07998 * 126.41618 * 359.92553 * 4 3 2 35 35 H 1.08003 * 125.81888 * 179.97438 * 5 4 3 36 36 H 1.08999 * 110.36283 * 322.92878 * 11 10 8 37 37 H 1.09004 * 110.36732 * 85.24568 * 11 10 8 38 38 H 1.09001 * 111.00248 * 81.06358 * 12 11 10 39 39 H 1.08997 * 111.00236 * 204.91357 * 12 11 10 40 40 H 1.00897 * 111.00052 * 31.04626 * 15 13 12 41 41 H 1.08997 * 109.46632 * 300.00201 * 16 15 13 42 42 H 1.08996 * 109.47025 * 60.00415 * 16 15 13 43 43 H 0.96999 * 119.99801 * 0.02562 * 19 17 16 44 44 H 0.97001 * 119.99728 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.88929 * 298.39625 * 28 10 8 46 46 H 1.09003 * 109.88327 * 59.56651 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1080 -1.0851 5 6 2.7650 3.3275 -0.6392 6 7 2.6493 3.3455 0.6865 7 6 2.1945 2.1798 1.0949 8 6 1.9245 1.7999 2.4934 9 8 1.5067 0.6875 2.7514 10 7 2.1408 2.6857 3.4861 11 6 2.6425 4.0615 3.3159 12 6 3.2877 4.4196 4.6779 13 6 2.3222 3.7229 5.6727 14 1 1.4515 4.3489 5.8675 15 7 3.0150 3.3949 6.9258 16 6 2.0660 3.3020 8.0434 17 6 2.8116 2.9655 9.3090 18 8 4.0152 2.8171 9.2827 19 7 2.1412 2.8293 10.4702 20 6 2.8194 2.5227 11.6215 21 1 3.8909 2.3898 11.5979 22 6 2.1281 2.3818 12.8186 23 7 0.8242 2.5431 12.8472 24 14 3.0524 1.9647 14.3874 25 1 4.5015 1.8370 14.0891 26 1 2.8453 3.0443 15.3858 27 1 2.5449 0.6807 14.9343 28 6 1.9093 2.4419 4.9173 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.3548 1.7776 -2.1132 35 1 3.1111 4.1447 -1.2548 36 1 3.3880 4.0978 2.5216 37 1 1.8191 4.7410 3.0957 38 1 4.2932 4.0059 4.7546 39 1 3.2978 5.4983 4.8338 40 1 3.7418 4.0662 7.1236 41 1 1.5548 4.2568 8.1661 42 1 1.3338 2.5220 7.8343 43 1 1.1786 2.9476 10.4912 44 1 0.3417 2.4451 13.6829 45 1 0.8544 2.2303 5.0915 46 1 2.5184 1.6029 5.2537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690664042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:48 Heat of formation + Delta-G solvation = 7.771480 kcal Electronic energy + Delta-G solvation = -28244.204864 eV Core-core repulsion = 24170.380878 eV Total energy + Delta-G solvation = -4073.823986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61720 -39.92216 -38.37589 -37.60187 -35.49471 -34.61889 -33.76740 -31.33938 -31.07403 -30.61752 -29.94020 -28.46525 -26.42285 -24.77097 -24.14960 -23.33619 -22.24015 -21.76070 -20.47839 -19.50874 -19.17269 -17.90285 -17.64231 -16.88299 -16.76717 -15.96770 -15.83044 -15.46834 -15.06377 -14.93771 -14.61614 -14.44046 -14.19512 -13.99221 -13.98903 -13.59654 -13.49016 -13.33381 -13.01769 -12.91758 -12.47060 -12.41030 -12.24359 -11.82649 -11.68846 -11.61451 -11.42046 -11.27028 -11.06107 -10.88918 -10.42651 -10.33210 -10.21634 -10.18909 -10.14341 -9.51046 -9.00238 -8.67156 -8.47716 -8.12983 -7.95270 -6.40753 -3.81413 1.09643 2.06124 2.32602 2.90664 3.17436 3.18342 3.28016 3.35440 3.91029 3.93206 4.09437 4.24923 4.28743 4.34247 4.49165 4.58416 4.62491 4.85781 4.91381 5.04718 5.06842 5.17516 5.22406 5.25274 5.25738 5.33343 5.41270 5.62029 5.68576 5.72573 5.76002 5.83517 5.86189 5.96028 5.98495 6.04389 6.14241 6.29155 6.33312 6.58177 7.17904 7.24345 7.46220 7.56639 7.61509 7.91789 8.07520 8.62121 9.19030 9.55334 10.06572 10.77053 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.001921 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.069124 B =14568.931518 C =15220.730496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.413 5.413 4 C -0.031 4.031 5 C -0.031 4.031 6 N -0.443 5.443 7 C 0.148 3.852 8 C 0.617 3.383 9 O -0.540 6.540 10 N -0.591 5.591 11 C 0.104 3.896 12 C -0.139 4.139 13 C 0.075 3.925 14 H 0.063 0.937 15 N -0.658 5.658 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.117 3.883 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.182 0.818 35 H 0.177 0.823 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.356 0.644 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 1.772 -29.408 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.093 5.093 4 C -0.169 4.169 5 C -0.184 4.184 6 N -0.165 5.165 7 C -0.111 4.111 8 C 0.403 3.597 9 O -0.417 6.417 10 N -0.324 5.324 11 C -0.019 4.019 12 C -0.178 4.178 13 C -0.036 4.036 14 H 0.081 0.919 15 N -0.292 5.292 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.006 4.006 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.199 0.801 35 H 0.195 0.805 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.177 0.823 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.406 0.787 -28.682 28.727 hybrid contribution -0.732 0.167 0.290 0.805 sum -2.138 0.955 -28.392 28.488 Atomic orbital electron populations 1.22066 0.93445 1.03545 1.02991 1.22150 0.96425 0.78677 1.05449 1.45279 1.45072 1.12897 1.06102 1.22922 1.06912 0.94028 0.93059 1.22473 1.07230 0.97486 0.91166 1.70292 1.15331 1.18626 1.12277 1.22538 1.10013 0.88508 0.90076 1.16001 0.78570 0.83711 0.81413 1.90815 1.47369 1.20269 1.83260 1.47977 1.63536 1.14273 1.06596 1.22571 0.99446 0.81481 0.98368 1.23071 1.00030 1.01031 0.93621 1.22523 0.96492 0.94133 0.90476 0.91897 1.59954 1.13161 1.55659 1.00396 1.21771 0.94905 1.00740 0.90960 1.19783 0.88320 0.84815 0.84453 1.90529 1.14416 1.55931 1.85823 1.41868 1.10068 1.61496 1.06605 1.19755 0.94259 1.44128 0.84642 0.87848 1.25273 0.95665 0.97520 0.99578 1.69621 1.06577 1.49961 1.28132 0.85795 0.79686 0.77924 0.80910 1.19208 1.20788 1.20756 1.22102 1.01358 0.99392 0.77749 0.92314 0.91285 0.90211 0.87110 0.88925 0.80135 0.80548 0.87737 0.91156 0.89346 0.89588 0.82279 0.93578 0.89518 0.77448 0.91932 0.91285 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.22 37.16 0.38 -0.76 16 2 C 0.09 0.70 6.17 -4.04 -0.02 0.68 16 3 N -0.41 -3.88 2.76 -114.59 -0.32 -4.19 16 4 C -0.03 -0.22 11.53 -16.93 -0.20 -0.42 16 5 C -0.03 -0.25 11.85 -17.96 -0.21 -0.47 16 6 N -0.44 -4.95 8.28 -11.26 -0.09 -5.04 16 7 C 0.15 1.77 7.64 -154.52 -1.18 0.59 16 8 C 0.62 8.51 7.84 -12.52 -0.10 8.42 16 9 O -0.54 -8.44 14.80 5.28 0.08 -8.36 16 10 N -0.59 -7.57 3.33 -171.78 -0.57 -8.14 16 11 C 0.10 1.09 6.13 -2.53 -0.02 1.07 16 12 C -0.14 -1.40 6.47 -24.59 -0.16 -1.56 16 13 C 0.07 0.91 3.27 -65.87 -0.22 0.70 16 14 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 15 N -0.66 -10.32 5.96 -106.05 -0.63 -10.95 16 16 C 0.05 0.85 6.03 -4.97 -0.03 0.82 16 17 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 18 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 19 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 24 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.12 1.56 6.64 -3.06 -0.02 1.54 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 1.03 6.65 -51.93 -0.35 0.69 16 33 H 0.09 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.18 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.10 1.12 6.16 -51.93 -0.32 0.80 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.36 5.65 8.13 -39.29 -0.32 5.33 16 41 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -34.30 384.21 -8.81 -43.11 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.69 Total: 12.80 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -2.10 Total: 12.86 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.95 Total: -66.62 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.30 -8.81 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690664042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds