Wall clock time and date at job start Tue Mar 31 2020 19:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.35400 * 126.44091 * 265.02655 * 3 2 1 5 5 C 1.35565 * 107.15983 * 179.97438 * 4 3 2 6 6 N 1.33094 * 108.35045 * 0.02562 * 5 4 3 7 7 C 1.31621 * 109.09598 * 359.75674 * 6 5 4 8 8 C 1.47412 * 125.86489 * 180.22971 * 7 6 5 9 9 O 1.21596 * 119.99708 * 180.18083 * 8 7 6 10 10 N 1.34781 * 119.99703 * 0.17968 * 8 7 6 11 11 C 1.47427 * 125.65242 * 0.02735 * 10 8 7 12 12 C 1.54906 * 104.83195 * 204.08835 * 11 10 8 13 13 C 1.55152 * 101.58148 * 322.98820 * 12 11 10 14 14 H 1.08992 * 110.72372 * 277.13821 * 13 12 11 15 15 N 1.46898 * 110.71875 * 154.04067 * 13 12 11 16 16 C 1.46907 * 111.00027 * 154.99900 * 15 13 12 17 17 C 1.50704 * 109.47111 * 180.02562 * 16 15 13 18 18 O 1.21293 * 120.00056 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99888 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00029 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00354 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00218 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99544 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99921 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47440 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46938 * 120.00061 * 24 22 20 27 27 H 1.48503 * 109.46612 * 239.99359 * 24 22 20 28 28 C 1.47017 * 125.64381 * 179.71155 * 10 8 7 29 29 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 34 34 H 1.07998 * 126.41618 * 359.92553 * 4 3 2 35 35 H 1.08003 * 125.81888 * 179.97438 * 5 4 3 36 36 H 1.08999 * 110.36283 * 322.92878 * 11 10 8 37 37 H 1.09004 * 110.36732 * 85.24568 * 11 10 8 38 38 H 1.09001 * 111.00248 * 81.06358 * 12 11 10 39 39 H 1.08997 * 111.00236 * 204.91357 * 12 11 10 40 40 H 1.00897 * 111.00052 * 31.04626 * 15 13 12 41 41 H 1.08997 * 109.46632 * 300.00201 * 16 15 13 42 42 H 1.08996 * 109.47025 * 60.00415 * 16 15 13 43 43 H 0.96999 * 119.99801 * 0.02562 * 19 17 16 44 44 H 0.97001 * 119.99728 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.88929 * 298.39625 * 28 10 8 46 46 H 1.09003 * 109.88327 * 59.56651 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1080 -1.0851 5 6 2.7650 3.3275 -0.6392 6 7 2.6493 3.3455 0.6865 7 6 2.1945 2.1798 1.0949 8 6 1.9245 1.7999 2.4934 9 8 1.5067 0.6875 2.7514 10 7 2.1408 2.6857 3.4861 11 6 2.6425 4.0615 3.3159 12 6 3.2877 4.4196 4.6779 13 6 2.3222 3.7229 5.6727 14 1 1.4515 4.3489 5.8675 15 7 3.0150 3.3949 6.9258 16 6 2.0660 3.3020 8.0434 17 6 2.8116 2.9655 9.3090 18 8 4.0152 2.8171 9.2827 19 7 2.1412 2.8293 10.4702 20 6 2.8194 2.5227 11.6215 21 1 3.8909 2.3898 11.5979 22 6 2.1281 2.3818 12.8186 23 7 0.8242 2.5431 12.8472 24 14 3.0524 1.9647 14.3874 25 1 4.5015 1.8370 14.0891 26 1 2.8453 3.0443 15.3858 27 1 2.5449 0.6807 14.9343 28 6 1.9093 2.4419 4.9173 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.3548 1.7776 -2.1132 35 1 3.1111 4.1447 -1.2548 36 1 3.3880 4.0978 2.5216 37 1 1.8191 4.7410 3.0957 38 1 4.2932 4.0059 4.7546 39 1 3.2978 5.4983 4.8338 40 1 3.7418 4.0662 7.1236 41 1 1.5548 4.2568 8.1661 42 1 1.3338 2.5220 7.8343 43 1 1.1786 2.9476 10.4912 44 1 0.3417 2.4451 13.6829 45 1 0.8544 2.2303 5.0915 46 1 2.5184 1.6029 5.2537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690664042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:47 Heat of formation + Delta-G solvation = -17.092959 kcal Electronic energy + Delta-G solvation = -28245.283067 eV Core-core repulsion = 24170.380878 eV Total energy + Delta-G solvation = -4074.902189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.30767 -40.93028 -40.11334 -38.78477 -36.38413 -35.97636 -35.44816 -33.27861 -32.14965 -31.36049 -30.67915 -29.53469 -27.93716 -26.14938 -25.14376 -24.34343 -23.08674 -22.42049 -21.45987 -21.09952 -20.30399 -19.89444 -18.50551 -17.98557 -17.62257 -17.49645 -16.77156 -16.66533 -16.36650 -16.24166 -15.89800 -15.59314 -15.29687 -15.14259 -14.87938 -14.67054 -14.59315 -14.53502 -13.99314 -13.83429 -13.63614 -13.52940 -13.46454 -13.12633 -13.02836 -12.84407 -12.65093 -12.40576 -12.30339 -12.24312 -12.11085 -11.82675 -11.51646 -11.40273 -10.96761 -10.84827 -10.35259 -10.01750 -9.88549 -9.45928 -9.41238 -8.47020 -5.95591 0.30410 1.31665 1.36463 1.41732 1.56092 1.62701 2.04888 2.09102 2.29170 2.32992 2.88877 3.12567 3.20420 3.39986 3.61397 3.68315 3.72808 3.81807 4.02179 4.16275 4.27177 4.31535 4.34012 4.37664 4.40419 4.48171 4.51078 4.59445 4.66039 4.71605 4.78190 4.84568 4.91327 4.95908 5.10870 5.12954 5.19695 5.33099 5.41252 5.70654 5.88256 5.91665 6.08746 6.27433 6.39526 6.59744 6.69282 7.00720 7.12495 7.56066 8.11245 8.70598 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.001921 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.069124 B =14568.931518 C =15220.730496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.046 4.046 6 N -0.454 5.454 7 C 0.105 3.895 8 C 0.608 3.392 9 O -0.573 6.573 10 N -0.596 5.596 11 C 0.110 3.890 12 C -0.129 4.129 13 C 0.081 3.919 14 H 0.085 0.915 15 N -0.674 5.674 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.118 3.882 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.226 0.774 35 H 0.206 0.794 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.355 0.645 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.067 0.933 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 2.740 -31.632 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.095 5.095 4 C -0.146 4.146 5 C -0.200 4.200 6 N -0.177 5.177 7 C -0.152 4.152 8 C 0.396 3.604 9 O -0.453 6.453 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.167 4.167 13 C -0.029 4.029 14 H 0.103 0.897 15 N -0.308 5.308 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.005 4.005 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.243 0.757 35 H 0.222 0.778 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.176 0.824 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.839 1.774 -30.905 31.010 hybrid contribution -0.586 -0.143 0.815 1.014 sum -2.425 1.630 -30.089 30.231 Atomic orbital electron populations 1.22010 0.93220 1.04200 1.01920 1.22273 0.96586 0.78028 1.06019 1.45501 1.44528 1.13377 1.06073 1.23704 1.03732 0.93100 0.94112 1.23100 1.07439 0.99056 0.90379 1.70214 1.15061 1.18412 1.14008 1.22161 1.13401 0.89838 0.89777 1.16411 0.78052 0.83407 0.82564 1.90777 1.48939 1.21542 1.84025 1.48084 1.63423 1.15137 1.06105 1.22631 0.99748 0.80368 0.98415 1.23055 0.98748 1.02402 0.92466 1.22533 0.97541 0.93809 0.89011 0.89698 1.59866 1.13422 1.56474 1.00999 1.21620 0.94468 1.02471 0.88233 1.20865 0.88148 0.82732 0.85701 1.90496 1.16531 1.57209 1.86719 1.41938 1.10219 1.62134 1.06777 1.19701 0.93602 1.46457 0.86462 0.90328 1.26057 0.96555 0.96753 1.02055 1.69678 1.07431 1.49769 1.29236 0.84862 0.78022 0.78233 0.77162 1.19808 1.19452 1.19743 1.21996 1.00658 0.99178 0.78692 0.90819 0.94703 0.88758 0.89746 0.85075 0.75724 0.77772 0.87898 0.89900 0.90459 0.86766 0.82368 0.90608 0.88294 0.76942 0.91309 0.91434 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.22 71.98 0.74 -1.34 16 2 C 0.09 1.27 6.17 86.38 0.53 1.81 16 3 N -0.41 -7.23 2.76 -516.44 -1.42 -8.65 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.65 11.85 83.88 0.99 0.34 16 6 N -0.45 -9.66 8.28 -189.52 -1.57 -11.23 16 7 C 0.10 2.51 7.64 136.28 1.04 3.55 16 8 C 0.61 17.59 7.84 86.66 0.68 18.27 16 9 O -0.57 -19.24 14.80 -4.02 -0.06 -19.30 16 10 N -0.60 -15.63 3.33 -815.66 -2.71 -18.34 16 11 C 0.11 2.21 6.13 86.85 0.53 2.75 16 12 C -0.13 -2.42 6.47 31.98 0.21 -2.21 16 13 C 0.08 1.90 3.27 46.11 0.15 2.05 16 14 H 0.09 1.68 7.82 -2.39 -0.02 1.66 16 15 N -0.67 -20.89 5.96 -489.43 -2.92 -23.81 16 16 C 0.06 2.18 6.03 85.56 0.52 2.70 16 17 C 0.44 20.96 7.82 87.66 0.69 21.65 16 18 O -0.62 -34.83 15.78 -3.07 -0.05 -34.88 16 19 N -0.57 -29.70 5.29 -306.98 -1.62 -31.33 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 24 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.12 3.24 6.64 86.74 0.58 3.82 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.70 7.82 -2.39 -0.02 0.68 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.65 6.65 -2.39 -0.02 1.64 16 33 H 0.13 0.77 8.13 -2.39 -0.02 0.75 16 34 H 0.23 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.10 2.15 6.16 -2.39 -0.01 2.13 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.36 11.14 8.13 -89.70 -0.73 10.41 16 41 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 42 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -78.14 384.21 0.41 -77.73 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.44 Total: 38.49 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 8.89 Total: 35.64 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -9.96 Total: -143.18 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.14 0.41 -77.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690664042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.640 kcal (2) G-P(sol) polarization free energy of solvation -78.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds