Wall clock time and date at job start Tue Mar 31 2020 18:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47366 * 2 1 4 4 C 1.50697 * 109.47160 * 120.00035 * 2 1 3 5 5 O 1.21288 * 120.00211 * 120.00209 * 4 2 1 6 6 N 1.34771 * 120.00375 * 299.99691 * 4 2 1 7 7 C 1.46504 * 120.00493 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47222 * 180.02562 * 7 6 4 9 9 C 1.53941 * 113.73016 * 271.72606 * 8 7 6 10 10 N 1.47962 * 86.18024 * 221.92174 * 9 8 7 11 11 C 1.46893 * 111.00154 * 137.57897 * 10 9 8 12 12 C 1.50702 * 109.47070 * 70.64002 * 11 10 9 13 13 O 1.21297 * 120.00019 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00373 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00079 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00270 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99859 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99752 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99875 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46982 * 90.00053 * 19 17 15 21 21 H 1.48492 * 109.47366 * 209.99878 * 19 17 15 22 22 H 1.48499 * 109.47541 * 330.00377 * 19 17 15 23 23 C 1.47968 * 90.76045 * 24.68707 * 10 9 8 24 24 N 1.46502 * 109.46765 * 239.99833 * 2 1 3 25 25 C 1.34942 * 126.03991 * 324.97610 * 24 2 1 26 26 C 1.35316 * 107.74613 * 179.75096 * 25 24 2 27 27 C 1.39870 * 107.92161 * 0.39436 * 26 25 24 28 28 N 1.30836 * 108.20019 * 359.59732 * 27 26 25 29 29 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47031 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47230 * 60.00003 * 1 2 3 32 32 H 0.97003 * 119.99882 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.46523 * 299.99977 * 7 6 4 34 34 H 1.08996 * 109.46737 * 59.99972 * 7 6 4 35 35 H 1.08996 * 112.94215 * 43.42909 * 8 7 6 36 36 H 1.09005 * 113.75535 * 336.23657 * 9 8 7 37 37 H 1.08993 * 113.75983 * 107.60182 * 9 8 7 38 38 H 1.08997 * 109.47770 * 190.63892 * 11 10 9 39 39 H 1.08999 * 109.47550 * 310.64466 * 11 10 9 40 40 H 0.97003 * 119.99769 * 0.02562 * 14 12 11 41 41 H 0.97005 * 119.99584 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.75742 * 220.98924 * 23 10 9 43 43 H 1.09005 * 113.75666 * 89.62893 * 23 10 9 44 44 H 1.08002 * 126.12737 * 359.97438 * 25 24 2 45 45 H 1.07998 * 126.04386 * 180.27449 * 26 25 24 46 46 H 1.08002 * 125.90382 * 179.86983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7069 -0.2500 2.4545 7 6 2.1957 -0.9403 3.6507 8 6 1.6851 -0.2194 4.9000 9 6 2.6079 0.9148 5.3814 10 7 2.3484 0.4120 6.7485 11 6 3.5821 0.3933 7.5456 12 6 3.9964 1.8070 7.8631 13 8 3.3292 2.7385 7.4650 14 7 5.1083 2.0364 8.5895 15 6 5.4848 3.3225 8.8788 16 1 4.8908 4.1518 8.5244 17 6 6.6309 3.5590 9.6282 18 7 7.3540 2.5498 10.0590 19 14 7.1444 5.3113 10.0218 20 1 6.5206 5.7343 11.3013 21 1 8.6226 5.3779 10.1460 22 1 6.6981 6.2148 8.9311 23 6 2.0405 -0.9339 6.2163 24 7 2.0183 -0.6907 -1.1962 25 6 1.4404 -1.7562 -1.7892 26 6 2.1935 -2.0894 -2.8629 27 6 3.2734 -1.2025 -2.9231 28 7 3.1676 -0.3615 -1.9265 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1489 0.5385 2.5436 33 1 1.8327 -1.9681 3.6508 34 1 3.2856 -0.9398 3.6505 35 1 0.6362 0.0677 4.8260 36 1 3.6441 0.8034 5.0618 37 1 2.2098 1.9127 5.1975 38 1 3.4071 -0.1511 8.4735 39 1 4.3731 -0.0986 6.9794 40 1 5.6421 1.2915 8.9076 41 1 8.1538 2.7149 10.5825 42 1 1.1892 -1.4131 6.6996 43 1 2.9108 -1.5860 6.1409 44 1 0.5366 -2.2518 -1.4669 45 1 1.9967 -2.8984 -3.5507 46 1 4.0567 -1.2079 -3.6666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692287013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:01 Heat of formation + Delta-G solvation = 51.999923 kcal Electronic energy + Delta-G solvation = -27822.068610 eV Core-core repulsion = 23750.162513 eV Total energy + Delta-G solvation = -4071.906097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58869 -40.37939 -39.58134 -37.75463 -35.12695 -34.96360 -33.91594 -31.43010 -30.96087 -30.31759 -29.76356 -27.52393 -26.03907 -25.39817 -24.66631 -22.74209 -21.69690 -21.31078 -20.43900 -19.57426 -19.22825 -18.09569 -17.81612 -17.45137 -16.36859 -16.24785 -15.85603 -15.37857 -15.25869 -14.92439 -14.64257 -14.57133 -14.22623 -14.09106 -13.88769 -13.68794 -13.37470 -13.23411 -13.08649 -12.93621 -12.73681 -12.55900 -12.22534 -12.08910 -11.76174 -11.52014 -11.40103 -11.09051 -10.92341 -10.72056 -10.68243 -10.41507 -10.37179 -10.23155 -9.62844 -9.52565 -9.43421 -8.83881 -8.70283 -8.26469 -7.98692 -6.43687 -3.84624 1.57216 2.02927 2.17098 2.65937 2.83528 3.16310 3.25094 3.30692 3.85539 3.93446 3.95795 4.12847 4.20358 4.29520 4.37996 4.50224 4.56381 4.68485 4.86821 4.89120 4.99840 5.03433 5.20424 5.25561 5.28789 5.34394 5.35781 5.46348 5.53789 5.54520 5.68336 5.69881 5.77459 5.79213 5.94295 6.04148 6.22802 6.24462 6.39661 6.57096 6.66483 7.05890 7.15472 7.46508 7.53094 7.77263 8.03324 8.58859 9.15646 9.51723 10.03124 10.74020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.001884 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.043162 B =14862.054647 C =15658.139688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.130 0.870 4 C 0.500 3.500 5 O -0.521 6.521 6 N -0.720 5.720 7 C 0.129 3.871 8 C -0.134 4.134 9 C 0.026 3.974 10 N -0.453 5.453 11 C 0.010 3.990 12 C 0.443 3.557 13 O -0.581 6.581 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.009 3.991 24 N -0.356 5.356 25 C 0.067 3.933 26 C -0.275 4.275 27 C 0.047 3.953 28 N -0.290 5.290 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.169 0.831 45 H 0.147 0.853 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -10.789 -20.735 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.148 0.852 4 C 0.283 3.717 5 O -0.396 6.396 6 N -0.373 5.373 7 C 0.005 3.995 8 C -0.153 4.153 9 C -0.103 4.103 10 N -0.175 5.175 11 C -0.122 4.122 12 C 0.228 3.772 13 O -0.465 6.465 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.121 4.121 24 N -0.138 5.138 25 C -0.079 4.079 26 C -0.304 4.304 27 C -0.140 4.140 28 N -0.110 5.110 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.239 0.761 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.186 0.814 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.401 -9.461 -19.797 26.245 hybrid contribution 0.883 -0.468 -0.133 1.008 sum -13.517 -9.929 -19.930 26.048 Atomic orbital electron populations 1.22166 0.90421 1.04357 1.04944 1.21094 0.96163 0.97898 0.81273 0.85230 1.20723 0.81021 0.85223 0.84743 1.90784 1.36589 1.25792 1.86422 1.45936 1.53789 1.32324 1.05249 1.21492 0.99546 0.96094 0.82338 1.23353 1.01447 0.97642 0.92885 1.23881 0.98115 0.99316 0.88998 1.68406 1.28896 1.09740 1.10476 1.22463 0.92162 0.97763 0.99827 1.19675 0.83526 0.89593 0.84378 1.90513 1.54726 1.44572 1.56653 1.41875 1.22374 1.09018 1.46773 1.19691 1.07896 0.84478 1.30833 0.87935 1.25275 0.96174 0.99605 0.96933 1.69612 1.16812 1.30923 1.36899 0.85849 0.77512 0.81894 0.78983 1.20370 1.20914 1.19435 1.23966 1.01548 0.93210 0.93384 1.48182 1.19805 1.24484 1.21347 1.22399 0.99882 0.90774 0.94807 1.21472 0.99274 1.06426 1.03233 1.23895 0.99060 0.93966 0.97035 1.77396 1.01888 1.24386 1.07368 0.90848 0.89106 0.89965 0.76133 0.91001 0.91079 0.87605 0.91445 0.88727 0.89102 0.92797 0.77489 0.91845 0.89043 0.91104 0.81350 0.83513 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 8.73 37.16 0.32 -0.31 16 2 C 0.14 1.12 3.73 -69.08 -0.26 0.86 16 3 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.50 5.18 7.22 -10.99 -0.08 5.10 16 5 O -0.52 -7.90 16.42 5.55 0.09 -7.81 16 6 N -0.72 -5.85 5.45 -60.29 -0.33 -6.18 16 7 C 0.13 1.22 5.53 -4.04 -0.02 1.20 16 8 C -0.13 -1.32 3.94 -89.69 -0.35 -1.67 16 9 C 0.03 0.36 6.31 -2.76 -0.02 0.35 16 10 N -0.45 -7.15 5.95 -239.72 -1.43 -8.57 16 11 C 0.01 0.17 5.31 -4.98 -0.03 0.15 16 12 C 0.44 10.45 7.59 -10.99 -0.08 10.37 16 13 O -0.58 -15.59 15.13 5.54 0.08 -15.51 16 14 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 15 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 19 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.01 0.10 7.54 -2.77 -0.02 0.07 16 24 N -0.36 -3.74 3.02 -55.99 -0.17 -3.91 16 25 C 0.07 0.60 10.57 -17.23 -0.18 0.42 16 26 C -0.27 -2.45 10.80 -40.01 -0.43 -2.88 16 27 C 0.05 0.48 12.03 -17.37 -0.21 0.27 16 28 N -0.29 -3.65 12.58 30.62 0.39 -3.27 16 29 H 0.07 0.28 7.16 -51.93 -0.37 -0.09 16 30 H 0.09 0.18 7.56 -51.93 -0.39 -0.21 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 2.17 7.89 -40.82 -0.32 1.84 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 37 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 44 H 0.17 0.98 7.26 -52.49 -0.38 0.60 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -37.48 389.33 -8.16 -45.63 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.70 Total: 10.05 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.60 Total: 5.90 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.87 Total: -60.23 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.48 -8.16 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692287013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.633 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds