Wall clock time and date at job start Tue Mar 31 2020 18:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47366 * 2 1 4 4 C 1.50697 * 109.47160 * 120.00035 * 2 1 3 5 5 O 1.21288 * 120.00211 * 120.00209 * 4 2 1 6 6 N 1.34771 * 120.00375 * 299.99691 * 4 2 1 7 7 C 1.46504 * 120.00493 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47222 * 180.02562 * 7 6 4 9 9 C 1.53941 * 113.73016 * 271.72606 * 8 7 6 10 10 N 1.47962 * 86.18024 * 221.92174 * 9 8 7 11 11 C 1.46893 * 111.00154 * 137.57897 * 10 9 8 12 12 C 1.50702 * 109.47070 * 70.64002 * 11 10 9 13 13 O 1.21297 * 120.00019 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00373 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00079 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00270 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99859 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99752 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99875 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46982 * 90.00053 * 19 17 15 21 21 H 1.48492 * 109.47366 * 209.99878 * 19 17 15 22 22 H 1.48499 * 109.47541 * 330.00377 * 19 17 15 23 23 C 1.47968 * 90.76045 * 24.68707 * 10 9 8 24 24 N 1.46502 * 109.46765 * 239.99833 * 2 1 3 25 25 C 1.34942 * 126.03991 * 324.97610 * 24 2 1 26 26 C 1.35316 * 107.74613 * 179.75096 * 25 24 2 27 27 C 1.39870 * 107.92161 * 0.39436 * 26 25 24 28 28 N 1.30836 * 108.20019 * 359.59732 * 27 26 25 29 29 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47031 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47230 * 60.00003 * 1 2 3 32 32 H 0.97003 * 119.99882 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.46523 * 299.99977 * 7 6 4 34 34 H 1.08996 * 109.46737 * 59.99972 * 7 6 4 35 35 H 1.08996 * 112.94215 * 43.42909 * 8 7 6 36 36 H 1.09005 * 113.75535 * 336.23657 * 9 8 7 37 37 H 1.08993 * 113.75983 * 107.60182 * 9 8 7 38 38 H 1.08997 * 109.47770 * 190.63892 * 11 10 9 39 39 H 1.08999 * 109.47550 * 310.64466 * 11 10 9 40 40 H 0.97003 * 119.99769 * 0.02562 * 14 12 11 41 41 H 0.97005 * 119.99584 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.75742 * 220.98924 * 23 10 9 43 43 H 1.09005 * 113.75666 * 89.62893 * 23 10 9 44 44 H 1.08002 * 126.12737 * 359.97438 * 25 24 2 45 45 H 1.07998 * 126.04386 * 180.27449 * 26 25 24 46 46 H 1.08002 * 125.90382 * 179.86983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7069 -0.2500 2.4545 7 6 2.1957 -0.9403 3.6507 8 6 1.6851 -0.2194 4.9000 9 6 2.6079 0.9148 5.3814 10 7 2.3484 0.4120 6.7485 11 6 3.5821 0.3933 7.5456 12 6 3.9964 1.8070 7.8631 13 8 3.3292 2.7385 7.4650 14 7 5.1083 2.0364 8.5895 15 6 5.4848 3.3225 8.8788 16 1 4.8908 4.1518 8.5244 17 6 6.6309 3.5590 9.6282 18 7 7.3540 2.5498 10.0590 19 14 7.1444 5.3113 10.0218 20 1 6.5206 5.7343 11.3013 21 1 8.6226 5.3779 10.1460 22 1 6.6981 6.2148 8.9311 23 6 2.0405 -0.9339 6.2163 24 7 2.0183 -0.6907 -1.1962 25 6 1.4404 -1.7562 -1.7892 26 6 2.1935 -2.0894 -2.8629 27 6 3.2734 -1.2025 -2.9231 28 7 3.1676 -0.3615 -1.9265 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1489 0.5385 2.5436 33 1 1.8327 -1.9681 3.6508 34 1 3.2856 -0.9398 3.6505 35 1 0.6362 0.0677 4.8260 36 1 3.6441 0.8034 5.0618 37 1 2.2098 1.9127 5.1975 38 1 3.4071 -0.1511 8.4735 39 1 4.3731 -0.0986 6.9794 40 1 5.6421 1.2915 8.9076 41 1 8.1538 2.7149 10.5825 42 1 1.1892 -1.4131 6.6996 43 1 2.9108 -1.5860 6.1409 44 1 0.5366 -2.2518 -1.4669 45 1 1.9967 -2.8984 -3.5507 46 1 4.0567 -1.2079 -3.6666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692287013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:00 Heat of formation + Delta-G solvation = 21.089822 kcal Electronic energy + Delta-G solvation = -27823.408973 eV Core-core repulsion = 23750.162513 eV Total energy + Delta-G solvation = -4073.246460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28186 -41.43511 -40.55678 -39.51721 -36.11781 -35.86438 -35.57861 -33.34812 -32.20022 -31.04154 -30.43561 -28.66703 -27.08533 -26.80357 -25.67450 -23.93831 -22.48230 -21.99667 -21.26881 -20.99620 -20.42576 -19.91826 -18.76021 -18.15139 -17.87231 -17.20628 -16.80007 -16.62448 -16.47980 -16.30334 -15.89202 -15.67028 -15.35501 -15.18284 -15.04448 -14.59336 -14.44963 -14.32738 -13.80307 -13.69887 -13.56558 -13.51276 -13.39215 -13.28250 -13.09303 -12.87030 -12.62773 -12.45877 -12.35119 -12.14851 -11.80254 -11.69131 -11.64648 -11.51485 -11.22183 -10.38069 -10.35750 -10.24148 -10.04719 -9.70914 -9.51834 -8.49558 -5.98500 0.87826 1.35635 1.37827 1.39329 1.43535 1.52158 1.97317 2.01582 2.12928 2.26478 2.80416 3.16791 3.22854 3.38948 3.44362 3.63102 3.67698 3.80516 3.97510 4.13580 4.15318 4.17830 4.28170 4.37927 4.48231 4.49764 4.56394 4.61076 4.62991 4.67042 4.72440 4.83159 4.88004 4.88390 5.08531 5.15302 5.16886 5.34108 5.37302 5.41820 5.72949 5.87581 6.05052 6.05826 6.39303 6.56623 6.75773 7.04714 7.09389 7.52508 8.07805 8.67877 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.001884 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.043162 B =14862.054647 C =15658.139688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.135 0.865 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.706 5.706 7 C 0.135 3.865 8 C -0.101 4.101 9 C 0.016 3.984 10 N -0.480 5.480 11 C 0.022 3.978 12 C 0.439 3.561 13 O -0.617 6.617 14 N -0.575 5.575 15 C -0.333 4.333 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.921 5.921 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.273 1.273 23 C 0.014 3.986 24 N -0.366 5.366 25 C 0.062 3.938 26 C -0.285 4.285 27 C 0.037 3.963 28 N -0.342 5.342 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.419 0.581 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.395 0.605 41 H 0.278 0.722 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.199 0.801 45 H 0.170 0.830 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -11.667 -21.039 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.152 0.848 4 C 0.285 3.715 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.011 3.989 8 C -0.120 4.120 9 C -0.113 4.113 10 N -0.203 5.203 11 C -0.109 4.109 12 C 0.227 3.773 13 O -0.503 6.503 14 N -0.213 5.213 15 C -0.463 4.463 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.562 5.562 19 Si 0.817 3.183 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.115 4.115 24 N -0.148 5.148 25 C -0.083 4.083 26 C -0.314 4.314 27 C -0.149 4.149 28 N -0.163 5.163 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.215 0.785 45 H 0.187 0.813 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.069 -10.336 -20.089 27.724 hybrid contribution 1.360 -0.221 -0.053 1.379 sum -14.709 -10.556 -20.141 27.083 Atomic orbital electron populations 1.22216 0.87066 1.05232 1.06553 1.21358 0.98585 0.97310 0.79400 0.84788 1.21192 0.80036 0.84524 0.85771 1.90758 1.39057 1.28297 1.87194 1.45826 1.53213 1.32444 1.04428 1.21341 0.98325 0.96671 0.82537 1.23148 1.01477 0.94898 0.92499 1.23856 0.98396 0.99877 0.89180 1.68409 1.27700 1.13108 1.11049 1.22351 0.93759 0.93402 1.01436 1.20762 0.82174 0.91899 0.82475 1.90478 1.55579 1.46693 1.57585 1.41966 1.23274 1.08374 1.47639 1.19655 1.08868 0.85144 1.32612 0.90297 1.26072 0.95597 1.03617 0.96158 1.69674 1.17041 1.32549 1.36890 0.84914 0.77628 0.77031 0.78688 1.19519 1.19561 1.19753 1.24096 1.02722 0.91340 0.93339 1.48427 1.19444 1.25139 1.21802 1.22987 1.00614 0.90204 0.94501 1.21861 0.98881 1.06854 1.03841 1.24399 0.99901 0.93700 0.96880 1.77305 1.03754 1.26331 1.08937 0.90299 0.86710 0.89109 0.74290 0.90003 0.93257 0.85295 0.92847 0.90814 0.87318 0.91030 0.77092 0.91290 0.86817 0.90035 0.78455 0.81260 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.73 71.98 0.63 -0.17 16 2 C 0.14 2.04 3.73 44.24 0.17 2.20 16 3 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.50 9.93 7.22 87.66 0.63 10.57 16 5 O -0.57 -17.42 16.42 -3.06 -0.05 -17.47 16 6 N -0.71 -10.28 5.45 -463.05 -2.52 -12.80 16 7 C 0.14 2.33 5.53 86.38 0.48 2.81 16 8 C -0.10 -1.75 3.94 -10.15 -0.04 -1.79 16 9 C 0.02 0.45 6.31 86.41 0.55 0.99 16 10 N -0.48 -14.52 5.95 -912.33 -5.43 -19.94 16 11 C 0.02 0.76 5.31 85.56 0.45 1.22 16 12 C 0.44 21.11 7.59 87.66 0.67 21.77 16 13 O -0.62 -34.11 15.13 -3.08 -0.05 -34.16 16 14 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 15 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 17 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 18 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 19 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.01 0.27 7.54 86.40 0.65 0.92 16 24 N -0.37 -7.50 3.02 -331.07 -1.00 -8.50 16 25 C 0.06 1.04 10.57 83.54 0.88 1.92 16 26 C -0.29 -4.80 10.80 21.99 0.24 -4.56 16 27 C 0.04 0.75 12.03 85.24 1.03 1.77 16 28 N -0.34 -8.76 12.58 -57.02 -0.72 -9.48 16 29 H 0.08 0.36 7.16 -2.39 -0.02 0.34 16 30 H 0.11 0.04 7.56 -2.39 -0.02 0.03 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.42 3.48 7.89 -92.71 -0.73 2.75 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.10 7.84 -2.39 -0.02 1.09 16 35 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.63 7.53 -2.38 -0.02 1.61 16 37 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 38 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.07 2.21 7.69 -2.39 -0.02 2.19 16 40 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 41 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 42 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 1.45 7.75 -2.38 -0.02 1.43 16 44 H 0.20 1.83 7.26 -2.91 -0.02 1.81 16 45 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -84.54 389.33 -1.91 -86.46 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.45 Total: 33.07 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.61 Total: 19.00 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -11.01 Total: -132.25 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.10 Total: -51.63 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -84.54 -1.91 -86.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692287013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.546 kcal (2) G-P(sol) polarization free energy of solvation -84.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds