Wall clock time and date at job start Tue Mar 31 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47414 * 2 1 4 4 C 1.53005 * 109.46789 * 240.00774 * 2 1 3 5 5 N 1.46500 * 109.46961 * 184.99910 * 4 2 1 6 6 C 1.36933 * 120.00090 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99796 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00376 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00126 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99861 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.46735 * 90.00153 * 10 8 6 12 12 H 1.48500 * 109.47207 * 210.00092 * 10 8 6 13 13 H 1.48494 * 109.47030 * 330.00043 * 10 8 6 14 14 N 1.46493 * 109.47579 * 120.00617 * 2 1 3 15 15 C 1.46503 * 120.00233 * 59.99642 * 14 2 1 16 16 C 1.34776 * 120.00179 * 239.99993 * 14 2 1 17 17 O 1.21284 * 119.99780 * 359.97438 * 16 14 2 18 18 C 1.50708 * 120.00160 * 179.97438 * 16 14 2 19 19 H 1.08997 * 109.50447 * 299.91171 * 18 16 14 20 20 C 1.53095 * 109.50394 * 59.99998 * 18 16 14 21 21 O 1.43011 * 109.25898 * 176.78088 * 20 18 16 22 22 C 1.43019 * 113.73926 * 301.33375 * 21 20 18 23 23 C 1.53092 * 109.25989 * 58.66781 * 22 21 20 24 24 N 1.47016 * 109.25754 * 303.15009 * 23 22 21 25 25 C 1.46900 * 111.00311 * 182.39387 * 24 23 22 26 26 C 1.53000 * 109.47171 * 40.71841 * 25 24 23 27 27 F 1.39900 * 109.47063 * 293.32662 * 26 25 24 28 28 F 1.39896 * 109.47027 * 53.32365 * 26 25 24 29 29 H 1.09003 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46698 * 299.99413 * 1 2 3 31 31 H 1.08996 * 109.47769 * 59.99413 * 1 2 3 32 32 H 1.09002 * 109.46537 * 304.99484 * 4 2 1 33 33 H 1.08993 * 109.47284 * 64.99747 * 4 2 1 34 34 H 0.97002 * 120.00099 * 359.97438 * 5 4 2 35 35 H 0.97005 * 119.99765 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47088 * 89.99690 * 15 14 2 37 37 H 1.09004 * 109.47481 * 210.00591 * 15 14 2 38 38 H 1.09003 * 109.47081 * 330.00227 * 15 14 2 39 39 H 1.09003 * 109.50746 * 296.71847 * 20 18 16 40 40 H 1.09003 * 109.50579 * 56.85036 * 20 18 16 41 41 H 1.08997 * 109.50848 * 178.60349 * 22 21 20 42 42 H 1.09002 * 109.50372 * 298.68896 * 22 21 20 43 43 H 1.08999 * 109.50926 * 63.08485 * 23 22 21 44 44 H 1.08998 * 109.50672 * 183.17627 * 23 22 21 45 45 H 1.08999 * 109.47393 * 160.71900 * 25 24 23 46 46 H 1.09001 * 109.47264 * 280.72002 * 25 24 23 47 47 H 1.08998 * 109.47404 * 173.32348 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.1837 -1.4386 -2.2070 7 1 3.6465 -1.8437 -3.0519 8 6 5.5670 -1.5387 -2.1513 9 7 6.2242 -2.1268 -3.1283 10 14 6.4960 -0.8387 -0.6895 11 1 6.6266 -1.8817 0.3594 12 1 7.8471 -0.4023 -1.1246 13 1 5.7528 0.3242 -0.1416 14 7 2.0184 -0.6907 1.1960 15 6 1.6645 -2.0933 1.4278 16 6 2.7933 -0.0358 2.0832 17 8 3.0866 1.1253 1.8911 18 6 3.2953 -0.7462 3.3139 19 1 2.4477 -1.0873 3.9084 20 6 4.1457 -1.9495 2.8984 21 8 4.6807 -2.5753 4.0677 22 6 5.4865 -1.7062 4.8683 23 6 4.6496 -0.5005 5.3038 24 7 4.1166 0.1756 4.1121 25 6 3.3526 1.3739 4.4841 26 6 4.0774 2.1112 5.6119 27 9 4.0584 1.3264 6.7698 28 9 5.4026 2.3533 5.2344 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 1.7515 -0.1581 -2.1370 34 1 3.9824 -0.4621 -0.4321 35 1 7.1909 -2.1971 -3.0891 36 1 2.4157 -2.7378 0.9713 37 1 1.6239 -2.2854 2.5000 38 1 0.6904 -2.3003 0.9845 39 1 3.5261 -2.6628 2.3549 40 1 4.9624 -1.6145 2.2589 41 1 5.8366 -2.2436 5.7496 42 1 6.3425 -1.3648 4.2863 43 1 3.8242 -0.8377 5.9307 44 1 5.2750 0.1923 5.8668 45 1 3.2632 2.0309 3.6190 46 1 2.3586 1.0806 4.8218 47 1 3.5763 3.0592 5.8071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698839012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:37 Heat of formation + Delta-G solvation = -153.631854 kcal Electronic energy + Delta-G solvation = -32359.830360 eV Core-core repulsion = 27828.318213 eV Total energy + Delta-G solvation = -4531.512146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.13952 -47.97917 -41.93175 -40.02901 -38.14889 -36.77575 -36.02207 -34.15552 -32.88781 -31.65198 -31.25413 -28.08995 -27.60383 -27.38334 -26.01014 -24.14412 -23.47835 -23.08139 -21.53412 -20.48821 -19.55848 -18.95157 -18.55570 -18.29828 -17.88398 -17.43648 -17.10471 -16.77716 -16.67658 -16.40425 -16.05804 -15.91272 -15.63305 -15.27206 -14.96804 -14.91467 -14.75320 -14.50916 -14.38877 -14.26603 -13.93290 -13.81556 -13.71503 -13.49715 -13.30785 -13.15246 -13.05459 -12.91333 -12.75193 -12.50636 -12.40694 -12.28863 -12.15380 -11.89464 -11.77399 -11.53436 -11.07486 -11.02170 -10.58464 -9.70678 -9.52711 -9.32435 -8.09150 -5.38838 1.24478 1.30575 1.36388 1.38468 1.78740 2.37900 2.39815 2.70454 2.79918 3.23094 3.23613 3.35988 3.48335 3.59403 3.62043 3.73625 3.82294 3.90931 3.97637 4.07877 4.14908 4.23368 4.28277 4.36682 4.39754 4.43821 4.48817 4.62829 4.68600 4.71344 4.78593 4.82683 4.84316 4.91483 4.99683 5.13598 5.32172 5.45781 5.60323 5.72250 5.72793 5.87342 6.16276 6.30841 7.02883 7.04883 7.81338 7.97510 9.12471 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.004866 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.543733 B = 5752.956317 C = 6655.910925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.143 3.857 5 N -0.756 5.756 6 C -0.222 4.222 7 H 0.069 0.931 8 C -0.049 4.049 9 N -0.976 5.976 10 Si 0.933 3.067 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.277 1.277 14 N -0.596 5.596 15 C 0.061 3.939 16 C 0.513 3.487 17 O -0.557 6.557 18 C 0.045 3.955 19 H 0.107 0.893 20 C 0.063 3.937 21 O -0.381 6.381 22 C 0.051 3.949 23 C 0.012 3.988 24 N -0.540 5.540 25 C -0.003 4.003 26 C 0.260 3.740 27 F -0.209 7.209 28 F -0.213 7.213 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.026 0.974 41 H 0.131 0.869 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 4.120 22.326 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.016 3.984 5 N -0.402 5.402 6 C -0.353 4.353 7 H 0.087 0.913 8 C -0.241 4.241 9 N -0.628 5.628 10 Si 0.763 3.237 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.203 1.203 14 N -0.329 5.329 15 C -0.081 4.081 16 C 0.301 3.699 17 O -0.436 6.436 18 C -0.066 4.066 19 H 0.124 0.876 20 C -0.014 4.014 21 O -0.299 6.299 22 C -0.026 4.026 23 C -0.115 4.115 24 N -0.267 5.267 25 C -0.131 4.131 26 C 0.207 3.793 27 F -0.191 7.191 28 F -0.195 7.195 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.044 0.956 41 H 0.149 0.851 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.099 0.901 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.426 4.550 21.801 26.005 hybrid contribution 0.927 0.364 0.601 1.164 sum -12.499 4.914 22.402 26.120 Atomic orbital electron populations 1.21967 0.90828 1.03887 1.03369 1.21365 0.96450 0.96577 0.83082 0.90552 1.21249 0.82657 0.98663 0.95800 1.42736 1.03514 1.70508 1.23394 1.19075 0.89852 1.27210 0.99128 0.91301 1.25179 0.97216 1.01999 0.99726 1.69820 1.07405 1.51007 1.34520 0.85766 0.78367 0.78767 0.80816 1.20156 1.22300 1.20328 1.47867 1.49664 1.13548 1.21789 1.22250 1.02810 0.79757 1.03273 1.20534 0.77785 0.86785 0.84817 1.90597 1.57905 1.18388 1.76706 1.22234 0.97029 0.93361 0.94006 0.87567 1.22924 0.96706 0.93987 0.87796 1.87998 1.67863 1.37696 1.36338 1.22987 0.92654 0.91036 0.95918 1.23356 1.00035 0.97039 0.91035 1.61959 1.37059 1.06456 1.21204 1.23635 0.96252 0.93844 0.99325 1.22381 0.79908 0.96024 0.81008 1.92932 1.96376 1.77397 1.52347 1.92978 1.39654 1.95118 1.91725 0.90220 0.91388 0.90166 0.93670 0.94544 0.80804 0.93367 0.92907 0.88652 0.87761 0.85112 0.95575 0.85115 0.93961 0.91803 0.87732 0.86539 0.90093 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.17 71.98 0.66 -1.94 16 2 C 0.13 3.64 2.80 44.99 0.13 3.77 16 3 H 0.08 2.58 6.90 -2.39 -0.02 2.57 16 4 C 0.14 5.10 5.56 86.38 0.48 5.58 16 5 N -0.76 -36.00 5.24 -343.45 -1.80 -37.80 16 6 C -0.22 -12.72 10.47 84.03 0.88 -11.83 16 7 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 8 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 9 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 10 Si 0.93 49.78 27.74 68.60 1.90 51.68 16 11 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 13 H -0.28 -14.87 6.52 99.48 0.65 -14.22 16 14 N -0.60 -16.00 2.24 -822.57 -1.85 -17.84 16 15 C 0.06 1.20 7.96 127.77 1.02 2.22 16 16 C 0.51 15.67 6.51 87.66 0.57 16.24 16 17 O -0.56 -20.75 13.09 -3.04 -0.04 -20.79 16 18 C 0.05 1.17 1.51 44.18 0.07 1.24 16 19 H 0.11 2.08 7.40 -2.39 -0.02 2.07 16 20 C 0.06 1.86 5.89 72.01 0.42 2.28 16 21 O -0.38 -10.54 10.83 -148.98 -1.61 -12.15 16 22 C 0.05 1.22 7.01 72.01 0.50 1.72 16 23 C 0.01 0.28 4.16 86.31 0.36 0.64 16 24 N -0.54 -14.40 4.38 -874.39 -3.83 -18.23 16 25 C 0.00 -0.06 4.98 86.30 0.43 0.37 16 26 C 0.26 4.60 5.13 71.98 0.37 4.97 16 27 F -0.21 -3.77 13.95 44.97 0.63 -3.14 16 28 F -0.21 -5.35 16.23 44.97 0.73 -4.62 16 29 H 0.08 1.18 6.66 -2.39 -0.02 1.16 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.51 7.84 -2.39 -0.02 1.49 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.36 17.72 4.93 -92.71 -0.46 17.26 16 35 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 36 H 0.05 1.28 7.02 -2.39 -0.02 1.27 16 37 H 0.10 1.37 5.97 -2.38 -0.01 1.36 16 38 H 0.10 1.52 6.43 -2.39 -0.02 1.50 16 39 H 0.13 3.38 4.63 -2.39 -0.01 3.37 16 40 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.13 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.24 7.83 -2.39 -0.02 1.23 16 44 H 0.10 2.34 4.96 -2.39 -0.01 2.33 16 45 H 0.12 3.08 5.75 -2.39 -0.01 3.07 16 46 H 0.08 1.36 7.99 -2.39 -0.02 1.34 16 47 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.49 362.71 1.28 -77.21 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.49 Total: 26.16 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.36 Total: 22.74 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -7.17 Total: -137.08 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.65 Total: -32.94 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.36 Total: -7.76 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.90 Total: 51.68 kcal Total: -78.49 1.28 -77.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.426 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds