Wall clock time and date at job start Tue Mar 31 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 C 1.52998 * 109.47027 * 239.99662 * 2 1 3 5 5 N 1.46506 * 109.46798 * 184.99792 * 4 2 1 6 6 C 1.36943 * 119.99571 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99623 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99813 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99739 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46781 * 180.02562 * 10 8 6 12 12 H 1.48507 * 109.46965 * 299.99766 * 10 8 6 13 13 H 1.48497 * 109.47388 * 59.99898 * 10 8 6 14 14 N 1.46503 * 109.47210 * 119.99736 * 2 1 3 15 15 C 1.46504 * 119.99689 * 60.00073 * 14 2 1 16 16 C 1.34771 * 120.00018 * 240.00250 * 14 2 1 17 17 O 1.21276 * 120.00204 * 5.57681 * 16 14 2 18 18 C 1.50703 * 119.99907 * 185.57885 * 16 14 2 19 19 H 1.08998 * 109.50863 * 35.23305 * 18 16 14 20 20 C 1.53108 * 109.50565 * 275.10437 * 18 16 14 21 21 O 1.43004 * 109.25746 * 183.21495 * 20 18 16 22 22 C 1.43016 * 113.74135 * 58.67158 * 21 20 18 23 23 C 1.53095 * 109.25913 * 301.33184 * 22 21 20 24 24 N 1.47006 * 109.50765 * 155.32355 * 18 16 14 25 25 C 1.46897 * 111.00173 * 302.32589 * 24 18 16 26 26 C 1.53004 * 109.47436 * 162.95540 * 25 24 18 27 27 F 1.39898 * 109.46685 * 305.65461 * 26 25 24 28 28 F 1.39897 * 109.46978 * 65.65360 * 26 25 24 29 29 H 1.09001 * 109.47452 * 60.00369 * 1 2 3 30 30 H 1.09007 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47472 * 299.99586 * 1 2 3 32 32 H 1.09005 * 109.47239 * 65.00249 * 4 2 1 33 33 H 1.08996 * 109.47710 * 305.00087 * 4 2 1 34 34 H 0.96996 * 119.99952 * 0.02562 * 5 4 2 35 35 H 0.97003 * 120.00414 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.46934 * 85.35349 * 15 14 2 37 37 H 1.09007 * 109.46933 * 205.35124 * 15 14 2 38 38 H 1.09001 * 109.47243 * 325.35684 * 15 14 2 39 39 H 1.09003 * 109.50467 * 303.15522 * 20 18 16 40 40 H 1.09003 * 109.50227 * 63.28068 * 20 18 16 41 41 H 1.09002 * 109.51077 * 181.39201 * 22 21 20 42 42 H 1.09009 * 109.50660 * 61.26081 * 22 21 20 43 43 H 1.09004 * 109.50344 * 296.91152 * 23 22 21 44 44 H 1.09000 * 109.50847 * 176.77992 * 23 22 21 45 45 H 1.09003 * 109.46647 * 282.95575 * 25 24 18 46 46 H 1.08995 * 109.47279 * 42.95185 * 25 24 18 47 47 H 1.08992 * 109.46976 * 185.65449 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4380 -2.2072 7 1 3.6470 -1.8425 -3.0524 8 6 5.5673 -1.5380 -2.1513 9 7 6.2217 -1.0446 -1.1215 10 14 6.5002 -2.3717 -3.5384 11 1 7.9548 -2.3489 -3.2404 12 1 6.0436 -3.7790 -3.6663 13 1 6.2437 -1.6505 -4.8109 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0355 2.0833 17 8 3.0030 1.1509 1.9452 18 6 3.3988 -0.7774 3.2469 19 1 3.6613 -1.7889 2.9368 20 6 2.3880 -0.8400 4.3952 21 8 2.9936 -1.4786 5.5224 22 6 4.1728 -0.8198 5.9926 23 6 5.2015 -0.7570 4.8605 24 7 4.6069 -0.0744 3.7022 25 6 5.5818 0.0575 2.6113 26 6 6.6096 1.1317 2.9728 27 9 5.9473 2.3221 3.2917 28 9 7.3608 0.7066 4.0738 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 3.9823 -0.4627 -0.4315 35 1 5.7373 -0.6113 -0.4013 36 1 2.3693 -2.7374 0.9025 37 1 1.7044 -2.3062 2.4964 38 1 0.6563 -2.2795 1.0578 39 1 2.0849 0.1707 4.6688 40 1 1.5140 -1.4100 4.0801 41 1 4.5895 -1.3752 6.8328 42 1 3.9216 0.1915 6.3126 43 1 5.4927 -1.7684 4.5769 44 1 6.0795 -0.2055 5.1968 45 1 6.0896 -0.8952 2.4607 46 1 5.0653 0.3427 1.6948 47 1 7.2723 1.3007 2.1242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698839013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:42 Heat of formation + Delta-G solvation = -145.206193 kcal Electronic energy + Delta-G solvation = -32446.124073 eV Core-core repulsion = 27914.977290 eV Total energy + Delta-G solvation = -4531.146782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.65617 -46.60098 -40.65896 -38.87303 -36.67046 -35.61871 -34.40710 -32.61533 -31.03135 -30.27504 -29.83648 -26.85617 -26.28151 -25.44483 -24.83414 -22.85031 -22.21655 -21.83139 -20.26082 -18.86970 -17.53163 -17.38846 -17.32741 -16.98947 -16.68695 -16.31771 -16.07933 -15.71531 -15.08782 -15.01375 -14.79186 -14.25986 -14.00368 -13.80329 -13.72668 -13.64760 -13.47917 -13.24803 -12.97053 -12.84215 -12.78086 -12.54457 -12.23418 -12.11716 -12.00024 -11.91489 -11.67249 -11.49543 -11.40664 -11.02643 -10.80965 -10.70435 -10.52925 -10.49538 -10.04772 -9.86324 -9.40531 -9.26943 -8.95991 -8.46879 -8.39580 -7.07455 -6.18336 -3.17004 2.70037 3.00527 3.46323 3.49414 3.50950 3.66665 3.75368 4.13009 4.48635 4.53193 4.61250 4.68306 4.85997 4.89114 4.97393 5.06259 5.07855 5.14283 5.19942 5.25586 5.27269 5.44853 5.46371 5.53862 5.54461 5.60040 5.68910 5.72972 5.82370 5.84354 5.85118 5.94937 5.98031 6.02602 6.21892 6.33424 6.57996 6.63913 6.79753 6.84524 6.93293 7.55249 7.73160 8.36619 8.67457 9.15130 10.01427 10.17654 11.29365 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005288 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.049276 B = 5294.021199 C = 6953.783793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.149 3.851 5 N -0.738 5.738 6 C -0.328 4.328 7 H 0.064 0.936 8 C -0.044 4.044 9 N -0.942 5.942 10 Si 1.080 2.920 11 H -0.285 1.285 12 H -0.296 1.296 13 H -0.295 1.295 14 N -0.598 5.598 15 C 0.073 3.927 16 C 0.520 3.480 17 O -0.514 6.514 18 C 0.033 3.967 19 H 0.075 0.925 20 C 0.078 3.922 21 O -0.380 6.380 22 C 0.064 3.936 23 C 0.001 3.999 24 N -0.507 5.507 25 C 0.005 3.995 26 C 0.275 3.725 27 F -0.193 7.193 28 F -0.212 7.212 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.365 0.635 35 H 0.250 0.750 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -0.905 11.910 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.118 0.882 4 C 0.021 3.979 5 N -0.384 5.384 6 C -0.459 4.459 7 H 0.082 0.918 8 C -0.242 4.242 9 N -0.588 5.588 10 Si 0.910 3.090 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.223 1.223 14 N -0.332 5.332 15 C -0.070 4.070 16 C 0.306 3.694 17 O -0.389 6.389 18 C -0.079 4.079 19 H 0.092 0.908 20 C 0.001 3.999 21 O -0.298 6.298 22 C -0.013 4.013 23 C -0.127 4.127 24 N -0.233 5.233 25 C -0.124 4.124 26 C 0.220 3.780 27 F -0.174 7.174 28 F -0.193 7.193 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.199 0.801 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.132 0.868 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.051 -0.472 11.351 12.872 hybrid contribution -1.039 -0.206 0.207 1.079 sum -7.089 -0.678 11.558 13.576 Atomic orbital electron populations 1.22047 0.94929 1.02106 1.02262 1.21425 0.93649 0.98355 0.84399 0.88247 1.20951 0.86371 0.96948 0.93642 1.42270 1.00440 1.71028 1.24667 1.20034 0.92241 1.33386 1.00242 0.91807 1.25733 0.93353 1.01775 1.03315 1.70915 1.37078 1.41096 1.09758 0.83239 0.76275 0.75264 0.74181 1.21027 1.22376 1.22281 1.47742 1.50668 1.12330 1.22455 1.21864 1.01682 0.82202 1.01297 1.20099 0.78784 0.87539 0.83023 1.90732 1.59007 1.14642 1.74474 1.22324 0.93296 0.97060 0.95243 0.90763 1.22564 0.93777 0.99203 0.84398 1.87985 1.41804 1.53084 1.46943 1.22725 0.84780 0.98222 0.95601 1.23273 0.99288 0.98453 0.91649 1.61916 1.04785 1.50023 1.06584 1.23307 0.94236 0.98668 0.96172 1.21897 0.88687 0.81532 0.85835 1.92995 1.82313 1.48055 1.94022 1.92838 1.77905 1.90205 1.58357 0.91305 0.92288 0.92453 0.95233 0.95950 0.80133 0.93826 0.91627 0.91398 0.90915 0.91418 0.87926 0.88122 0.91962 0.93499 0.87267 0.91006 0.86778 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.16 37.16 0.34 -1.56 16 2 C 0.12 2.04 2.80 -67.93 -0.19 1.85 16 3 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 4 C 0.15 2.91 5.56 -4.04 -0.02 2.89 16 5 N -0.74 -18.12 5.43 -59.90 -0.33 -18.45 16 6 C -0.33 -9.01 9.99 -15.05 -0.15 -9.16 16 7 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 8 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 9 N -0.94 -27.70 13.70 55.49 0.76 -26.94 16 10 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.30 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 14 N -0.60 -9.30 2.24 -173.93 -0.39 -9.69 16 15 C 0.07 0.92 9.09 59.85 0.54 1.47 16 16 C 0.52 8.86 5.38 -10.99 -0.06 8.81 16 17 O -0.51 -10.52 14.71 5.56 0.08 -10.44 16 18 C 0.03 0.49 1.53 -68.75 -0.11 0.38 16 19 H 0.07 1.12 7.12 -51.93 -0.37 0.75 16 20 C 0.08 0.98 6.05 37.21 0.23 1.21 16 21 O -0.38 -4.85 10.83 -35.23 -0.38 -5.23 16 22 C 0.06 0.72 7.01 37.21 0.26 0.99 16 23 C 0.00 0.01 5.33 -3.71 -0.02 -0.01 16 24 N -0.51 -7.91 4.04 -227.72 -0.92 -8.83 16 25 C 0.00 0.08 4.99 -3.82 -0.02 0.06 16 26 C 0.27 4.36 5.57 37.16 0.21 4.57 16 27 F -0.19 -3.46 17.16 2.25 0.04 -3.42 16 28 F -0.21 -3.18 14.53 2.25 0.03 -3.15 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.64 6.69 -51.93 -0.35 0.30 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.43 7.84 -51.93 -0.41 0.02 16 34 H 0.37 9.36 5.90 -40.82 -0.24 9.12 16 35 H 0.25 7.23 6.77 -40.82 -0.28 6.96 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.71 4.82 -51.93 -0.25 0.46 16 38 H 0.07 0.77 6.45 -51.93 -0.33 0.44 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.07 6.47 -51.93 -0.34 0.73 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.11 1.42 5.45 -51.93 -0.28 1.14 16 45 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 46 H 0.11 2.30 5.85 -51.93 -0.30 2.00 16 47 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -32.88 371.23 -6.62 -39.50 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.94 Total: 10.68 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.92 Total: 10.15 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.88 Total: -63.92 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.30 Total: -15.67 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.07 Total: -6.56 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.88 -6.62 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.709 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds