Wall clock time and date at job start Tue Mar 31 2020 18:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 C 1.52998 * 109.47027 * 239.99662 * 2 1 3 5 5 N 1.46506 * 109.46798 * 184.99792 * 4 2 1 6 6 C 1.36943 * 119.99571 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99623 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99813 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99739 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46781 * 180.02562 * 10 8 6 12 12 H 1.48507 * 109.46965 * 299.99766 * 10 8 6 13 13 H 1.48497 * 109.47388 * 59.99898 * 10 8 6 14 14 N 1.46503 * 109.47210 * 119.99736 * 2 1 3 15 15 C 1.46504 * 119.99689 * 60.00073 * 14 2 1 16 16 C 1.34771 * 120.00018 * 240.00250 * 14 2 1 17 17 O 1.21276 * 120.00204 * 5.57681 * 16 14 2 18 18 C 1.50703 * 119.99907 * 185.57885 * 16 14 2 19 19 H 1.08998 * 109.50863 * 35.23305 * 18 16 14 20 20 C 1.53108 * 109.50565 * 275.10437 * 18 16 14 21 21 O 1.43004 * 109.25746 * 183.21495 * 20 18 16 22 22 C 1.43016 * 113.74135 * 58.67158 * 21 20 18 23 23 C 1.53095 * 109.25913 * 301.33184 * 22 21 20 24 24 N 1.47006 * 109.50765 * 155.32355 * 18 16 14 25 25 C 1.46897 * 111.00173 * 302.32589 * 24 18 16 26 26 C 1.53004 * 109.47436 * 162.95540 * 25 24 18 27 27 F 1.39898 * 109.46685 * 305.65461 * 26 25 24 28 28 F 1.39897 * 109.46978 * 65.65360 * 26 25 24 29 29 H 1.09001 * 109.47452 * 60.00369 * 1 2 3 30 30 H 1.09007 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47472 * 299.99586 * 1 2 3 32 32 H 1.09005 * 109.47239 * 65.00249 * 4 2 1 33 33 H 1.08996 * 109.47710 * 305.00087 * 4 2 1 34 34 H 0.96996 * 119.99952 * 0.02562 * 5 4 2 35 35 H 0.97003 * 120.00414 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.46934 * 85.35349 * 15 14 2 37 37 H 1.09007 * 109.46933 * 205.35124 * 15 14 2 38 38 H 1.09001 * 109.47243 * 325.35684 * 15 14 2 39 39 H 1.09003 * 109.50467 * 303.15522 * 20 18 16 40 40 H 1.09003 * 109.50227 * 63.28068 * 20 18 16 41 41 H 1.09002 * 109.51077 * 181.39201 * 22 21 20 42 42 H 1.09009 * 109.50660 * 61.26081 * 22 21 20 43 43 H 1.09004 * 109.50344 * 296.91152 * 23 22 21 44 44 H 1.09000 * 109.50847 * 176.77992 * 23 22 21 45 45 H 1.09003 * 109.46647 * 282.95575 * 25 24 18 46 46 H 1.08995 * 109.47279 * 42.95185 * 25 24 18 47 47 H 1.08992 * 109.46976 * 185.65449 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4380 -2.2072 7 1 3.6470 -1.8425 -3.0524 8 6 5.5673 -1.5380 -2.1513 9 7 6.2217 -1.0446 -1.1215 10 14 6.5002 -2.3717 -3.5384 11 1 7.9548 -2.3489 -3.2404 12 1 6.0436 -3.7790 -3.6663 13 1 6.2437 -1.6505 -4.8109 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0355 2.0833 17 8 3.0030 1.1509 1.9452 18 6 3.3988 -0.7774 3.2469 19 1 3.6613 -1.7889 2.9368 20 6 2.3880 -0.8400 4.3952 21 8 2.9936 -1.4786 5.5224 22 6 4.1728 -0.8198 5.9926 23 6 5.2015 -0.7570 4.8605 24 7 4.6069 -0.0744 3.7022 25 6 5.5818 0.0575 2.6113 26 6 6.6096 1.1317 2.9728 27 9 5.9473 2.3221 3.2917 28 9 7.3608 0.7066 4.0738 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 3.9823 -0.4627 -0.4315 35 1 5.7373 -0.6113 -0.4013 36 1 2.3693 -2.7374 0.9025 37 1 1.7044 -2.3062 2.4964 38 1 0.6563 -2.2795 1.0578 39 1 2.0849 0.1707 4.6688 40 1 1.5140 -1.4100 4.0801 41 1 4.5895 -1.3752 6.8328 42 1 3.9216 0.1915 6.3126 43 1 5.4927 -1.7684 4.5769 44 1 6.0795 -0.2055 5.1968 45 1 6.0896 -0.8952 2.4607 46 1 5.0653 0.3427 1.6948 47 1 7.2723 1.3007 2.1242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698839013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:41 Heat of formation + Delta-G solvation = -168.846793 kcal Electronic energy + Delta-G solvation = -32447.149206 eV Core-core repulsion = 27914.977290 eV Total energy + Delta-G solvation = -4532.171916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98649 -47.95317 -41.89421 -40.04253 -38.06191 -36.87756 -36.16099 -34.04132 -32.44126 -31.57681 -31.26879 -27.99081 -27.43354 -27.09298 -25.99143 -24.69709 -23.51176 -23.09287 -21.48719 -20.17988 -19.34985 -18.81275 -18.65349 -18.30833 -17.88336 -17.50214 -17.35581 -16.98064 -16.50728 -16.20681 -16.07063 -15.78339 -15.50213 -15.28122 -15.09523 -15.02389 -14.90230 -14.50973 -14.31236 -14.23624 -14.00850 -13.85958 -13.43622 -13.40635 -13.19342 -13.00722 -12.86127 -12.79495 -12.63447 -12.57702 -12.52712 -12.22681 -11.91790 -11.89939 -11.57380 -11.28945 -11.06503 -10.94808 -10.63663 -9.71748 -9.66565 -9.11483 -8.39143 -5.32961 1.38472 1.56975 1.66001 1.79257 1.82426 2.33668 2.68521 2.74581 2.81730 3.21181 3.33684 3.39626 3.43052 3.62214 3.71381 3.79619 3.85198 3.94472 3.96434 4.08718 4.14187 4.19980 4.22349 4.32091 4.36170 4.42705 4.49948 4.58632 4.59761 4.70705 4.74827 4.76646 4.81947 4.85102 4.93203 5.06309 5.24479 5.39635 5.51982 5.58880 5.67299 5.93115 6.29989 6.48469 7.06145 7.08076 7.96815 8.10267 9.11121 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005288 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.049276 B = 5294.021199 C = 6953.783793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 H 0.068 0.932 4 C 0.148 3.852 5 N -0.751 5.751 6 C -0.334 4.334 7 H 0.066 0.934 8 C -0.100 4.100 9 N -0.967 5.967 10 Si 1.127 2.873 11 H -0.293 1.293 12 H -0.278 1.278 13 H -0.282 1.282 14 N -0.596 5.596 15 C 0.071 3.929 16 C 0.516 3.484 17 O -0.557 6.557 18 C 0.037 3.963 19 H 0.072 0.928 20 C 0.085 3.915 21 O -0.382 6.382 22 C 0.065 3.935 23 C 0.001 3.999 24 N -0.517 5.517 25 C 0.013 3.987 26 C 0.278 3.722 27 F -0.204 7.204 28 F -0.204 7.204 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.356 0.644 35 H 0.241 0.759 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -2.339 12.573 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.086 0.914 4 C 0.021 3.979 5 N -0.395 5.395 6 C -0.465 4.465 7 H 0.084 0.916 8 C -0.292 4.292 9 N -0.615 5.615 10 Si 0.952 3.048 11 H -0.219 1.219 12 H -0.204 1.204 13 H -0.209 1.209 14 N -0.329 5.329 15 C -0.071 4.071 16 C 0.303 3.697 17 O -0.434 6.434 18 C -0.075 4.075 19 H 0.090 0.910 20 C 0.008 3.992 21 O -0.300 6.300 22 C -0.012 4.012 23 C -0.126 4.126 24 N -0.243 5.243 25 C -0.116 4.116 26 C 0.224 3.776 27 F -0.186 7.186 28 F -0.185 7.185 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.188 0.812 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.128 0.872 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.568 -1.933 12.018 14.333 hybrid contribution -0.612 0.247 -0.012 0.660 sum -8.180 -1.686 12.006 14.626 Atomic orbital electron populations 1.21969 0.91045 1.03797 1.03298 1.21292 0.96423 0.96182 0.83424 0.91399 1.21128 0.83717 0.97806 0.95262 1.42462 1.02505 1.70769 1.23795 1.20351 0.92727 1.32745 1.00724 0.91637 1.27084 0.94808 1.02473 1.04824 1.70998 1.37338 1.42627 1.10490 0.82625 0.74559 0.75430 0.72182 1.21946 1.20428 1.20884 1.47840 1.50032 1.13396 1.21648 1.22045 1.02421 0.79798 1.02835 1.20511 0.78336 0.87202 0.83647 1.90704 1.60449 1.16590 1.75677 1.22367 0.93569 0.96138 0.95476 0.91039 1.22604 0.93654 0.99524 0.83464 1.87990 1.42110 1.53262 1.46645 1.22874 0.83906 0.98909 0.95470 1.23357 0.99984 0.98063 0.91236 1.61965 1.04788 1.50973 1.06593 1.23074 0.94451 0.98467 0.95603 1.21904 0.88587 0.80726 0.86368 1.92967 1.82691 1.48772 1.94150 1.92848 1.77561 1.90076 1.58018 0.90234 0.90176 0.91523 0.95486 0.94674 0.81189 0.94793 0.94114 0.88950 0.88035 0.92033 0.85307 0.85079 0.91912 0.93529 0.87229 0.91729 0.90224 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.16 71.98 0.66 -2.49 16 2 C 0.13 4.22 2.80 44.99 0.13 4.35 16 3 H 0.07 2.65 6.91 -2.39 -0.02 2.63 16 4 C 0.15 5.74 5.56 86.38 0.48 6.22 16 5 N -0.75 -37.59 5.43 -343.43 -1.87 -39.45 16 6 C -0.33 -18.49 9.99 84.03 0.84 -17.65 16 7 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 8 C -0.10 -5.67 5.50 84.86 0.47 -5.21 16 9 N -0.97 -58.24 13.70 21.65 0.30 -57.94 16 10 Si 1.13 51.04 29.92 68.60 2.05 53.10 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 14 N -0.60 -18.31 2.24 -822.58 -1.85 -20.15 16 15 C 0.07 1.67 9.09 127.77 1.16 2.83 16 16 C 0.52 17.89 5.38 87.66 0.47 18.36 16 17 O -0.56 -23.77 14.71 -3.02 -0.04 -23.81 16 18 C 0.04 1.08 1.53 44.19 0.07 1.15 16 19 H 0.07 2.14 7.12 -2.39 -0.02 2.13 16 20 C 0.09 1.99 6.05 72.02 0.44 2.42 16 21 O -0.38 -8.82 10.83 -148.98 -1.61 -10.43 16 22 C 0.06 1.35 7.01 72.01 0.50 1.85 16 23 C 0.00 0.02 5.33 86.31 0.46 0.48 16 24 N -0.52 -16.30 4.04 -874.39 -3.54 -19.84 16 25 C 0.01 0.47 4.99 86.31 0.43 0.90 16 26 C 0.28 9.11 5.57 71.98 0.40 9.51 16 27 F -0.20 -7.55 17.16 44.97 0.77 -6.78 16 28 F -0.20 -6.10 14.53 44.97 0.65 -5.45 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.44 6.69 -2.38 -0.02 1.43 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 34 H 0.36 19.03 5.90 -92.71 -0.55 18.48 16 35 H 0.24 14.56 6.77 -92.71 -0.63 13.93 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.70 4.82 -2.38 -0.01 1.69 16 38 H 0.10 1.80 6.45 -2.39 -0.02 1.79 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.13 2.28 6.47 -2.39 -0.02 2.27 16 41 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.11 2.77 5.45 -2.39 -0.01 2.75 16 45 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 46 H 0.08 3.44 5.85 -2.39 -0.01 3.43 16 47 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 Total: -1.00 -72.68 371.23 1.97 -70.71 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.59 Total: 37.34 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.50 Total: 22.71 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -6.95 Total: -137.39 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.66 Total: -34.25 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 1.42 Total: -12.23 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.10 kcal Total: -72.68 1.97 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.134 kcal (2) G-P(sol) polarization free energy of solvation -72.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds