Wall clock time and date at job start Tue Mar 31 2020 18:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47100 * 2 1 4 4 C 1.53000 * 109.47115 * 120.00339 * 2 1 3 5 5 N 1.46499 * 109.46971 * 174.99836 * 4 2 1 6 6 C 1.36937 * 119.99797 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99832 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99606 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00169 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47404 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47097 * 299.99964 * 10 8 6 13 13 H 1.48501 * 109.46951 * 59.99772 * 10 8 6 14 14 N 1.46505 * 109.46805 * 240.00412 * 2 1 3 15 15 C 1.46505 * 119.99935 * 299.99238 * 14 2 1 16 16 C 1.34776 * 119.99817 * 120.00090 * 14 2 1 17 17 O 1.21272 * 119.99833 * 355.41313 * 16 14 2 18 18 C 1.50695 * 119.99503 * 175.41177 * 16 14 2 19 19 H 1.09003 * 109.51013 * 33.06059 * 18 16 14 20 20 C 1.53098 * 109.50961 * 272.97044 * 18 16 14 21 21 O 1.43023 * 109.25501 * 183.26652 * 20 18 16 22 22 C 1.43016 * 113.77729 * 58.60228 * 21 20 18 23 23 C 1.53094 * 109.25713 * 301.35355 * 22 21 20 24 24 N 1.47014 * 109.50333 * 153.14616 * 18 16 14 25 25 C 1.46902 * 111.00083 * 302.32591 * 24 18 16 26 26 C 1.53005 * 109.47142 * 163.55449 * 25 24 18 27 27 F 1.39893 * 109.46956 * 304.61070 * 26 25 24 28 28 F 1.39902 * 109.47083 * 64.61294 * 26 25 24 29 29 H 1.08998 * 109.47215 * 60.00129 * 1 2 3 30 30 H 1.09006 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47239 * 299.99769 * 1 2 3 32 32 H 1.09001 * 109.46970 * 54.99795 * 4 2 1 33 33 H 1.09001 * 109.46873 * 294.99941 * 4 2 1 34 34 H 0.97002 * 119.99888 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00638 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.46385 * 95.14739 * 15 14 2 37 37 H 1.08993 * 109.47510 * 215.14931 * 15 14 2 38 38 H 1.09005 * 109.46919 * 335.15595 * 15 14 2 39 39 H 1.08999 * 109.50776 * 303.15140 * 20 18 16 40 40 H 1.08998 * 109.50298 * 63.28637 * 20 18 16 41 41 H 1.09000 * 109.50751 * 181.41893 * 22 21 20 42 42 H 1.09000 * 109.50650 * 61.28547 * 22 21 20 43 43 H 1.09004 * 109.50875 * 296.90903 * 23 22 21 44 44 H 1.09002 * 109.50461 * 176.78525 * 23 22 21 45 45 H 1.09000 * 109.47050 * 283.55058 * 25 24 18 46 46 H 1.08998 * 109.46974 * 43.55379 * 25 24 18 47 47 H 1.08995 * 109.46835 * 184.61120 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1839 -1.4381 2.2071 7 1 3.6469 -1.8425 3.0523 8 6 5.5674 -1.5372 2.1517 9 7 6.2217 -1.0438 1.1218 10 14 6.5003 -2.3709 3.5387 11 1 7.9550 -2.3471 3.2413 12 1 6.2430 -1.6503 4.8115 13 1 6.0445 -3.7785 3.6659 14 7 2.0183 -0.6906 -1.1963 15 6 1.6645 -2.0932 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.0177 1.1470 -1.9352 18 6 3.3804 -0.7726 -3.2593 19 1 2.6905 -1.5526 -3.5814 20 6 4.7136 -1.4054 -2.8521 21 8 5.3026 -2.0385 -3.9913 22 6 5.5382 -1.1502 -5.0871 23 6 4.2128 -0.5157 -5.5166 24 7 3.6074 0.1691 -4.3652 25 6 2.3588 0.8411 -4.7492 26 6 2.6828 2.0780 -5.5894 27 9 3.5589 2.9068 -4.8805 28 9 3.2834 1.6824 -6.7895 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9824 -0.4622 0.4318 35 1 5.7374 -0.6106 0.4017 36 1 0.7893 -2.1447 -2.0758 37 1 2.5003 -2.6047 -1.9053 38 1 1.4403 -2.5736 -0.4756 39 1 5.3848 -0.6319 -2.4789 40 1 4.5413 -2.1464 -2.0715 41 1 5.9627 -1.7072 -5.9223 42 1 6.2329 -0.3688 -4.7792 43 1 3.5368 -1.2921 -5.8750 44 1 4.3957 0.2048 -6.3138 45 1 1.7426 0.1569 -5.3326 46 1 1.8177 1.1426 -3.8524 47 1 1.7631 2.6216 -5.8054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698839014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:45 Heat of formation + Delta-G solvation = -142.914176 kcal Electronic energy + Delta-G solvation = -32130.738424 eV Core-core repulsion = 27599.691031 eV Total energy + Delta-G solvation = -4531.047393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.99935 -46.94050 -40.64741 -38.82571 -36.66573 -35.66648 -34.32028 -32.57359 -30.97351 -30.48190 -29.82800 -26.82001 -26.36876 -25.45765 -24.74740 -22.77973 -22.50619 -21.82503 -20.21663 -18.90467 -17.77345 -17.56667 -17.23838 -17.17771 -16.79755 -16.36042 -16.12147 -15.62105 -15.20982 -15.01926 -14.54609 -14.47784 -14.03570 -13.90983 -13.83598 -13.71685 -13.43687 -13.30476 -13.24385 -12.89561 -12.70843 -12.50259 -12.44336 -12.25813 -12.07154 -11.92668 -11.79693 -11.47600 -11.42320 -11.18787 -10.75616 -10.64983 -10.48776 -10.45679 -9.96843 -9.79904 -9.37898 -9.17686 -8.87345 -8.60193 -8.41904 -6.98400 -6.06470 -3.07147 2.69249 2.93914 3.43520 3.52843 3.56605 3.73175 3.74571 3.90436 4.09272 4.33841 4.53533 4.69093 4.72514 4.80971 4.89249 4.94260 5.07697 5.15717 5.19692 5.21907 5.23460 5.28440 5.43286 5.44962 5.52512 5.62425 5.63789 5.75248 5.76023 5.83511 5.90863 5.93546 6.02825 6.10637 6.19794 6.38346 6.49661 6.59401 6.65568 6.85453 7.12592 7.54575 7.81586 8.35680 8.78520 9.25045 10.11726 10.27285 11.40850 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.004140 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.035490 B = 6761.952200 C = 7838.389446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.100 0.900 4 C 0.150 3.850 5 N -0.738 5.738 6 C -0.335 4.335 7 H 0.063 0.937 8 C -0.042 4.042 9 N -0.938 5.938 10 Si 1.079 2.921 11 H -0.285 1.285 12 H -0.296 1.296 13 H -0.296 1.296 14 N -0.597 5.597 15 C 0.078 3.922 16 C 0.519 3.481 17 O -0.513 6.513 18 C 0.037 3.963 19 H 0.069 0.931 20 C 0.080 3.920 21 O -0.377 6.377 22 C 0.060 3.940 23 C 0.003 3.997 24 N -0.507 5.507 25 C 0.000 4.000 26 C 0.274 3.726 27 F -0.186 7.186 28 F -0.208 7.208 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.029 0.971 34 H 0.368 0.632 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 0.382 -15.503 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.021 3.979 5 N -0.384 5.384 6 C -0.466 4.466 7 H 0.081 0.919 8 C -0.241 4.241 9 N -0.583 5.583 10 Si 0.910 3.090 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.224 1.224 14 N -0.331 5.331 15 C -0.066 4.066 16 C 0.305 3.695 17 O -0.387 6.387 18 C -0.075 4.075 19 H 0.087 0.913 20 C 0.002 3.998 21 O -0.295 6.295 22 C -0.017 4.017 23 C -0.124 4.124 24 N -0.233 5.233 25 C -0.129 4.129 26 C 0.220 3.780 27 F -0.167 7.167 28 F -0.190 7.190 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.201 0.799 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.127 0.873 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.685 0.660 -14.527 18.045 hybrid contribution -2.110 0.089 -0.943 2.313 sum -12.796 0.749 -15.470 20.090 Atomic orbital electron populations 1.22035 0.94959 1.02094 1.02060 1.21443 0.93502 0.98464 0.84482 0.88214 1.20938 0.86614 0.96810 0.93544 1.42277 1.00277 1.71021 1.24851 1.19985 0.92216 1.33996 1.00394 0.91917 1.25744 0.93358 1.01689 1.03271 1.70881 1.37375 1.40416 1.09654 0.83253 0.76353 0.75219 0.74139 1.21014 1.22359 1.22360 1.47761 1.50476 1.12330 1.22576 1.21778 1.00023 0.81978 1.02783 1.20090 0.78476 0.87496 0.83435 1.90734 1.58351 1.15043 1.74603 1.22378 0.99886 0.93743 0.91494 0.91310 1.22574 0.90627 0.98466 0.88127 1.88021 1.81635 1.35466 1.24332 1.22704 0.95353 0.93774 0.89853 1.23298 0.97114 0.98471 0.93512 1.61844 1.24650 1.29751 1.07069 1.23311 0.92730 0.95462 1.01395 1.21838 0.88983 0.90014 0.77179 1.93052 1.72307 1.72807 1.78576 1.92862 1.86203 1.91496 1.48395 0.92734 0.92359 0.91319 0.96053 0.95314 0.79857 0.93413 0.93236 0.91339 0.89919 0.90595 0.87132 0.88197 0.91754 0.93819 0.87331 0.91921 0.87326 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 37.16 0.34 -1.51 16 2 C 0.12 2.03 2.79 -67.93 -0.19 1.84 16 3 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 4 C 0.15 2.95 5.52 -4.04 -0.02 2.93 16 5 N -0.74 -18.60 5.43 -59.91 -0.33 -18.92 16 6 C -0.34 -9.45 9.99 -15.06 -0.15 -9.60 16 7 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 8 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 9 N -0.94 -29.24 13.70 55.49 0.76 -28.48 16 10 Si 1.08 26.13 29.92 -169.99 -5.09 21.05 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.60 -9.28 2.24 -173.93 -0.39 -9.67 16 15 C 0.08 0.98 8.83 59.85 0.53 1.51 16 16 C 0.52 8.84 5.31 -10.99 -0.06 8.78 16 17 O -0.51 -10.51 14.86 5.56 0.08 -10.42 16 18 C 0.04 0.55 1.55 -68.75 -0.11 0.44 16 19 H 0.07 0.88 6.70 -51.93 -0.35 0.54 16 20 C 0.08 1.36 6.14 37.21 0.23 1.58 16 21 O -0.38 -5.99 10.82 -35.23 -0.38 -6.37 16 22 C 0.06 0.78 7.01 37.21 0.26 1.04 16 23 C 0.00 0.04 5.33 -3.71 -0.02 0.02 16 24 N -0.51 -7.14 4.07 -227.72 -0.93 -8.07 16 25 C 0.00 0.00 5.01 -3.82 -0.02 -0.02 16 26 C 0.27 2.95 5.57 37.16 0.21 3.16 16 27 F -0.19 -2.79 17.18 2.25 0.04 -2.75 16 28 F -0.21 -2.31 14.44 2.25 0.03 -2.27 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.63 7.67 -51.93 -0.40 0.24 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.41 6.86 -51.93 -0.36 0.06 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.37 9.80 5.90 -40.82 -0.24 9.56 16 35 H 0.25 7.95 6.77 -40.82 -0.28 7.67 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.87 5.67 -51.93 -0.29 0.58 16 38 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.11 1.98 7.22 -51.93 -0.37 1.61 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.11 1.24 5.38 -51.93 -0.28 0.96 16 45 H 0.06 0.56 8.04 -51.93 -0.42 0.15 16 46 H 0.11 1.38 5.93 -51.93 -0.31 1.08 16 47 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -34.98 372.41 -6.68 -41.67 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.00 Total: 9.80 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.90 Total: 8.84 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.88 Total: -65.14 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.30 Total: -16.79 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.98 -6.68 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.249 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds