Wall clock time and date at job start Tue Mar 31 2020 18:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47100 * 2 1 4 4 C 1.53000 * 109.47115 * 120.00339 * 2 1 3 5 5 N 1.46499 * 109.46971 * 174.99836 * 4 2 1 6 6 C 1.36937 * 119.99797 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99832 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99606 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00169 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47404 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47097 * 299.99964 * 10 8 6 13 13 H 1.48501 * 109.46951 * 59.99772 * 10 8 6 14 14 N 1.46505 * 109.46805 * 240.00412 * 2 1 3 15 15 C 1.46505 * 119.99935 * 299.99238 * 14 2 1 16 16 C 1.34776 * 119.99817 * 120.00090 * 14 2 1 17 17 O 1.21272 * 119.99833 * 355.41313 * 16 14 2 18 18 C 1.50695 * 119.99503 * 175.41177 * 16 14 2 19 19 H 1.09003 * 109.51013 * 33.06059 * 18 16 14 20 20 C 1.53098 * 109.50961 * 272.97044 * 18 16 14 21 21 O 1.43023 * 109.25501 * 183.26652 * 20 18 16 22 22 C 1.43016 * 113.77729 * 58.60228 * 21 20 18 23 23 C 1.53094 * 109.25713 * 301.35355 * 22 21 20 24 24 N 1.47014 * 109.50333 * 153.14616 * 18 16 14 25 25 C 1.46902 * 111.00083 * 302.32591 * 24 18 16 26 26 C 1.53005 * 109.47142 * 163.55449 * 25 24 18 27 27 F 1.39893 * 109.46956 * 304.61070 * 26 25 24 28 28 F 1.39902 * 109.47083 * 64.61294 * 26 25 24 29 29 H 1.08998 * 109.47215 * 60.00129 * 1 2 3 30 30 H 1.09006 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47239 * 299.99769 * 1 2 3 32 32 H 1.09001 * 109.46970 * 54.99795 * 4 2 1 33 33 H 1.09001 * 109.46873 * 294.99941 * 4 2 1 34 34 H 0.97002 * 119.99888 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00638 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.46385 * 95.14739 * 15 14 2 37 37 H 1.08993 * 109.47510 * 215.14931 * 15 14 2 38 38 H 1.09005 * 109.46919 * 335.15595 * 15 14 2 39 39 H 1.08999 * 109.50776 * 303.15140 * 20 18 16 40 40 H 1.08998 * 109.50298 * 63.28637 * 20 18 16 41 41 H 1.09000 * 109.50751 * 181.41893 * 22 21 20 42 42 H 1.09000 * 109.50650 * 61.28547 * 22 21 20 43 43 H 1.09004 * 109.50875 * 296.90903 * 23 22 21 44 44 H 1.09002 * 109.50461 * 176.78525 * 23 22 21 45 45 H 1.09000 * 109.47050 * 283.55058 * 25 24 18 46 46 H 1.08998 * 109.46974 * 43.55379 * 25 24 18 47 47 H 1.08995 * 109.46835 * 184.61120 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1839 -1.4381 2.2071 7 1 3.6469 -1.8425 3.0523 8 6 5.5674 -1.5372 2.1517 9 7 6.2217 -1.0438 1.1218 10 14 6.5003 -2.3709 3.5387 11 1 7.9550 -2.3471 3.2413 12 1 6.2430 -1.6503 4.8115 13 1 6.0445 -3.7785 3.6659 14 7 2.0183 -0.6906 -1.1963 15 6 1.6645 -2.0932 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.0177 1.1470 -1.9352 18 6 3.3804 -0.7726 -3.2593 19 1 2.6905 -1.5526 -3.5814 20 6 4.7136 -1.4054 -2.8521 21 8 5.3026 -2.0385 -3.9913 22 6 5.5382 -1.1502 -5.0871 23 6 4.2128 -0.5157 -5.5166 24 7 3.6074 0.1691 -4.3652 25 6 2.3588 0.8411 -4.7492 26 6 2.6828 2.0780 -5.5894 27 9 3.5589 2.9068 -4.8805 28 9 3.2834 1.6824 -6.7895 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9824 -0.4622 0.4318 35 1 5.7374 -0.6106 0.4017 36 1 0.7893 -2.1447 -2.0758 37 1 2.5003 -2.6047 -1.9053 38 1 1.4403 -2.5736 -0.4756 39 1 5.3848 -0.6319 -2.4789 40 1 4.5413 -2.1464 -2.0715 41 1 5.9627 -1.7072 -5.9223 42 1 6.2329 -0.3688 -4.7792 43 1 3.5368 -1.2921 -5.8750 44 1 4.3957 0.2048 -6.3138 45 1 1.7426 0.1569 -5.3326 46 1 1.8177 1.1426 -3.8524 47 1 1.7631 2.6216 -5.8054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698839014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:44 Heat of formation + Delta-G solvation = -169.206677 kcal Electronic energy + Delta-G solvation = -32131.878552 eV Core-core repulsion = 27599.691031 eV Total energy + Delta-G solvation = -4532.187521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.89257 -47.88568 -41.88621 -40.06115 -38.08063 -36.84987 -36.14993 -34.02493 -32.44307 -31.55387 -31.26857 -27.93788 -27.42007 -27.13196 -26.04049 -24.69075 -23.44123 -23.09407 -21.43509 -20.17422 -19.32757 -18.79529 -18.60198 -18.25659 -17.85133 -17.57716 -17.24519 -16.88351 -16.71279 -16.11312 -15.95366 -15.83901 -15.54738 -15.20932 -15.09659 -15.07386 -14.89084 -14.43480 -14.24038 -14.13996 -13.93027 -13.74843 -13.52903 -13.36933 -13.18243 -13.05227 -12.83671 -12.79924 -12.61956 -12.60661 -12.54639 -12.18632 -11.92863 -11.89795 -11.59927 -11.27673 -11.03192 -10.93280 -10.65891 -9.70638 -9.56518 -9.10838 -8.37803 -5.32519 1.37211 1.56941 1.67256 1.76866 1.83610 2.39762 2.69935 2.72253 2.91762 3.28257 3.35360 3.41634 3.51954 3.62829 3.73164 3.73229 3.86549 3.95922 3.98788 4.10072 4.14815 4.16919 4.23084 4.33715 4.37712 4.42219 4.54781 4.58023 4.59666 4.69871 4.75276 4.76396 4.82041 4.86468 4.92047 5.05407 5.23245 5.43452 5.55386 5.60815 5.72318 5.90913 6.30307 6.46914 7.06616 7.08124 7.98679 8.11867 9.11914 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.004140 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.035490 B = 6761.952200 C = 7838.389446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.130 3.870 3 H 0.067 0.933 4 C 0.147 3.853 5 N -0.752 5.752 6 C -0.333 4.333 7 H 0.069 0.931 8 C -0.103 4.103 9 N -0.970 5.970 10 Si 1.128 2.872 11 H -0.296 1.296 12 H -0.280 1.280 13 H -0.273 1.273 14 N -0.595 5.595 15 C 0.073 3.927 16 C 0.515 3.485 17 O -0.557 6.557 18 C 0.052 3.948 19 H 0.098 0.902 20 C 0.090 3.910 21 O -0.385 6.385 22 C 0.052 3.948 23 C 0.010 3.990 24 N -0.537 5.537 25 C 0.001 3.999 26 C 0.267 3.733 27 F -0.217 7.217 28 F -0.209 7.209 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.356 0.644 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 -1.065 -16.504 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.085 0.915 4 C 0.019 3.981 5 N -0.397 5.397 6 C -0.465 4.465 7 H 0.087 0.913 8 C -0.294 4.294 9 N -0.618 5.618 10 Si 0.953 3.047 11 H -0.223 1.223 12 H -0.206 1.206 13 H -0.199 1.199 14 N -0.328 5.328 15 C -0.069 4.069 16 C 0.302 3.698 17 O -0.435 6.435 18 C -0.060 4.060 19 H 0.116 0.884 20 C 0.012 3.988 21 O -0.303 6.303 22 C -0.024 4.024 23 C -0.116 4.116 24 N -0.263 5.263 25 C -0.128 4.128 26 C 0.214 3.786 27 F -0.198 7.198 28 F -0.191 7.191 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.188 0.812 35 H 0.049 0.951 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.394 -0.815 -15.526 20.521 hybrid contribution -1.330 0.545 -0.637 1.572 sum -14.724 -0.270 -16.164 21.866 Atomic orbital electron populations 1.21944 0.90863 1.03747 1.03238 1.21298 0.96418 0.96192 0.83412 0.91473 1.21157 0.83638 0.97917 0.95339 1.42504 1.02569 1.70710 1.23871 1.20363 0.92637 1.32658 1.00797 0.91304 1.27190 0.95040 1.02486 1.04733 1.71008 1.37569 1.42676 1.10564 0.82633 0.74414 0.75628 0.72059 1.22268 1.20627 1.19922 1.47860 1.49834 1.13434 1.21710 1.22003 1.01548 0.79914 1.03464 1.20495 0.78033 0.87118 0.84104 1.90707 1.59878 1.17081 1.75829 1.22154 0.98433 0.94205 0.91183 0.88437 1.22216 0.91320 0.96735 0.88533 1.87999 1.81722 1.36089 1.24532 1.22979 0.96139 0.93620 0.89676 1.23290 0.96528 0.99017 0.92811 1.61780 1.26715 1.30203 1.07644 1.23376 0.91842 0.96115 1.01417 1.22345 0.89737 0.89879 0.76658 1.92993 1.73601 1.73773 1.79459 1.92850 1.86436 1.91518 1.48266 0.91444 0.90365 0.90325 0.94399 0.95516 0.81184 0.95134 0.89058 0.91687 0.90314 0.95098 0.88750 0.84872 0.93756 0.91619 0.86538 0.88473 0.88750 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C 0.13 4.21 2.79 44.99 0.13 4.34 16 3 H 0.07 2.63 6.91 -2.39 -0.02 2.61 16 4 C 0.15 5.73 5.52 86.38 0.48 6.21 16 5 N -0.75 -38.76 5.43 -343.45 -1.87 -40.62 16 6 C -0.33 -18.96 9.99 84.03 0.84 -18.12 16 7 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 8 C -0.10 -6.11 5.50 84.86 0.47 -5.64 16 9 N -0.97 -62.87 13.70 21.65 0.30 -62.58 16 10 Si 1.13 52.96 29.92 68.60 2.05 55.02 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 N -0.60 -18.16 2.24 -822.59 -1.85 -20.00 16 15 C 0.07 1.68 8.83 127.77 1.13 2.81 16 16 C 0.52 17.87 5.31 87.66 0.47 18.33 16 17 O -0.56 -23.96 14.86 -3.01 -0.04 -24.01 16 18 C 0.05 1.53 1.55 44.18 0.07 1.60 16 19 H 0.10 2.28 6.70 -2.39 -0.02 2.27 16 20 C 0.09 3.24 6.14 72.01 0.44 3.68 16 21 O -0.39 -12.41 10.82 -148.98 -1.61 -14.02 16 22 C 0.05 1.33 7.01 72.01 0.50 1.83 16 23 C 0.01 0.23 5.33 86.31 0.46 0.69 16 24 N -0.54 -14.79 4.07 -874.38 -3.56 -18.35 16 25 C 0.00 0.02 5.01 86.30 0.43 0.45 16 26 C 0.27 5.28 5.57 71.98 0.40 5.68 16 27 F -0.22 -6.55 17.18 44.97 0.77 -5.78 16 28 F -0.21 -4.19 14.44 44.97 0.65 -3.54 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.40 7.67 -2.38 -0.02 1.38 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.36 19.93 5.90 -92.71 -0.55 19.38 16 35 H 0.24 15.79 6.77 -92.71 -0.63 15.17 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.56 5.67 -2.39 -0.01 1.55 16 38 H 0.08 1.90 6.53 -2.38 -0.02 1.88 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 3.61 7.22 -2.39 -0.02 3.60 16 41 H 0.13 2.45 8.14 -2.39 -0.02 2.44 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.12 2.43 5.38 -2.39 -0.01 2.42 16 45 H 0.10 1.36 8.04 -2.39 -0.02 1.34 16 46 H 0.09 2.30 5.93 -2.39 -0.01 2.28 16 47 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -80.44 372.41 1.90 -78.54 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.59 Total: 35.82 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.47 Total: 19.52 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -6.97 Total: -141.55 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.66 Total: -38.03 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 1.42 Total: -9.32 kcal Atomic # 14 Polarization: 52.96 SS G_CDS: 2.05 Total: 55.02 kcal Total: -80.44 1.90 -78.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.668 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds