Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47600 * 2 1 4 4 C 1.53010 * 109.47067 * 120.00286 * 2 1 3 5 5 N 1.46499 * 109.47104 * 174.99910 * 4 2 1 6 6 C 1.36929 * 119.99955 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00470 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99803 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47092 * 59.99950 * 10 8 6 12 12 H 1.48497 * 109.46840 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47138 * 299.99839 * 10 8 6 14 14 N 1.46496 * 109.47209 * 239.99994 * 2 1 3 15 15 C 1.46500 * 119.99821 * 294.51288 * 14 2 1 16 16 C 1.34771 * 120.00451 * 114.51194 * 14 2 1 17 17 O 1.21284 * 120.00429 * 183.92609 * 16 14 2 18 18 C 1.50705 * 119.99770 * 3.64203 * 16 14 2 19 19 H 1.09000 * 109.51057 * 312.93307 * 18 16 14 20 20 C 1.53097 * 109.50174 * 73.01549 * 18 16 14 21 21 O 1.43018 * 109.25823 * 176.78275 * 20 18 16 22 22 C 1.43021 * 113.73765 * 301.33025 * 21 20 18 23 23 C 1.53097 * 109.25445 * 58.67178 * 22 21 20 24 24 N 1.47011 * 109.50776 * 192.79898 * 18 16 14 25 25 C 1.46895 * 111.00258 * 57.67384 * 24 18 16 26 26 C 1.53002 * 109.47241 * 175.24408 * 25 24 18 27 27 F 1.39902 * 109.47036 * 293.24967 * 26 25 24 28 28 F 1.39898 * 109.47185 * 53.25375 * 26 25 24 29 29 H 1.09007 * 109.46813 * 300.00080 * 1 2 3 30 30 H 1.08997 * 109.47232 * 59.99566 * 1 2 3 31 31 H 1.08997 * 109.47618 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46460 * 294.99754 * 4 2 1 33 33 H 1.08993 * 109.46623 * 54.99604 * 4 2 1 34 34 H 0.97000 * 120.00086 * 359.97438 * 5 4 2 35 35 H 0.96996 * 119.99916 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.47441 * 274.88196 * 15 14 2 37 37 H 1.09000 * 109.47439 * 34.88359 * 15 14 2 38 38 H 1.09004 * 109.47373 * 154.88823 * 15 14 2 39 39 H 1.08995 * 109.51356 * 296.71957 * 20 18 16 40 40 H 1.09001 * 109.50711 * 56.85184 * 20 18 16 41 41 H 1.09003 * 109.50387 * 178.59876 * 22 21 20 42 42 H 1.08994 * 109.50710 * 298.68999 * 22 21 20 43 43 H 1.09003 * 109.50962 * 63.08625 * 23 22 21 44 44 H 1.09008 * 109.50284 * 183.17106 * 23 22 21 45 45 H 1.08994 * 109.47267 * 295.24973 * 25 24 18 46 46 H 1.09005 * 109.46880 * 55.24443 * 25 24 18 47 47 H 1.09003 * 109.47032 * 173.25575 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1838 -1.4381 2.2072 7 1 3.6468 -1.8426 3.0525 8 6 5.5672 -1.5372 2.1518 9 7 6.2218 -1.0439 1.1220 10 14 6.5001 -2.3709 3.5391 11 1 6.0443 -3.7785 3.6662 12 1 7.9548 -2.3471 3.2416 13 1 6.2427 -1.6504 4.8117 14 7 2.0183 -0.6906 -1.1961 15 6 1.7662 -2.1233 -1.3689 16 6 2.6995 -0.0079 -2.1376 17 8 3.0418 -0.5627 -3.1603 18 6 3.0302 1.4465 -1.9223 19 1 2.1419 1.9743 -1.5752 20 6 4.1395 1.5687 -0.8742 21 8 4.5014 2.9447 -0.7286 22 6 4.9553 3.5520 -1.9413 23 6 3.8542 3.4499 -3.0000 24 7 3.4907 2.0377 -3.1870 25 6 2.4749 1.8902 -4.2378 26 6 2.9383 2.6185 -5.5011 27 9 2.9729 3.9960 -5.2589 28 9 4.2175 2.1745 -5.8526 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9823 -0.4629 0.4316 35 1 7.1885 -1.1135 1.0832 36 1 2.5397 -2.6932 -0.8539 37 1 0.7912 -2.3738 -0.9508 38 1 1.7801 -2.3693 -2.4308 39 1 3.7822 1.1834 0.0807 40 1 5.0091 0.9958 -1.1961 41 1 5.1878 4.6011 -1.7580 42 1 5.8490 3.0373 -2.2938 43 1 2.9793 4.0104 -2.6706 44 1 4.2162 3.8611 -3.9424 45 1 2.3326 0.8326 -4.4597 46 1 1.5332 2.3195 -3.8956 47 1 2.2447 2.4102 -6.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698839015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = -132.117183 kcal Electronic energy + Delta-G solvation = -32383.640028 eV Core-core repulsion = 27853.060828 eV Total energy + Delta-G solvation = -4530.579200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.15083 -47.00979 -40.61231 -38.57104 -36.92096 -35.52794 -33.94414 -31.61607 -31.56756 -30.36326 -30.10826 -27.27178 -25.87108 -25.77180 -24.28560 -22.82369 -22.46254 -21.50508 -20.61416 -18.94928 -17.84221 -17.52329 -17.18700 -17.11445 -16.71449 -15.95733 -15.82695 -15.41154 -14.93318 -14.74953 -14.66360 -14.52752 -14.24558 -13.92300 -13.80843 -13.68776 -13.43221 -13.37677 -12.98333 -12.87793 -12.54543 -12.44343 -12.27799 -11.96134 -11.91224 -11.78074 -11.75288 -11.43037 -11.34773 -10.98768 -10.89739 -10.80825 -10.65533 -10.25314 -10.06394 -9.73112 -9.65411 -9.23227 -8.92074 -8.47721 -8.29722 -6.98981 -5.78559 -3.09213 2.78688 3.06002 3.43703 3.48104 3.49848 3.55906 3.71840 4.07347 4.10372 4.44611 4.54848 4.60434 4.75876 4.91468 4.95510 5.03012 5.07967 5.22068 5.25851 5.35332 5.37969 5.39737 5.55231 5.62142 5.66282 5.76323 5.77819 5.82116 5.87947 5.95714 6.00568 6.08649 6.21546 6.29891 6.39524 6.41905 6.55644 6.66071 6.79476 6.85812 7.35221 7.62477 7.67377 8.38522 8.41748 9.50293 10.03447 10.37882 11.43415 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.004179 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.905807 B = 6698.245524 C = 7570.577908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 H 0.091 0.909 4 C 0.140 3.860 5 N -0.731 5.731 6 C -0.249 4.249 7 H 0.070 0.930 8 C -0.007 4.007 9 N -0.927 5.927 10 Si 0.908 3.092 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.594 5.594 15 C 0.088 3.912 16 C 0.524 3.476 17 O -0.525 6.525 18 C 0.034 3.966 19 H 0.069 0.931 20 C 0.069 3.931 21 O -0.374 6.374 22 C 0.058 3.942 23 C -0.001 4.001 24 N -0.506 5.506 25 C -0.006 4.006 26 C 0.268 3.732 27 F -0.207 7.207 28 F -0.190 7.190 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.057 0.943 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 8.396 -10.545 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.109 0.891 4 C 0.011 3.989 5 N -0.379 5.379 6 C -0.380 4.380 7 H 0.088 0.912 8 C -0.204 4.204 9 N -0.574 5.574 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.327 5.327 15 C -0.055 4.055 16 C 0.311 3.689 17 O -0.402 6.402 18 C -0.078 4.078 19 H 0.087 0.913 20 C -0.008 4.008 21 O -0.292 6.292 22 C -0.019 4.019 23 C -0.128 4.128 24 N -0.231 5.231 25 C -0.135 4.135 26 C 0.214 3.786 27 F -0.188 7.188 28 F -0.171 7.171 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.075 0.925 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.916 7.869 -10.920 17.977 hybrid contribution 0.048 -0.022 0.631 0.634 sum -11.868 7.847 -10.289 17.558 Atomic orbital electron populations 1.22090 0.94754 1.02694 1.02116 1.21718 0.94230 0.97410 0.85868 0.89066 1.21050 0.87243 0.97365 0.93229 1.42491 0.99572 1.70522 1.25274 1.19115 0.89367 1.30365 0.99123 0.91176 1.24739 0.96433 1.01276 0.97941 1.69622 1.07498 1.50286 1.30035 0.86275 0.79054 0.79219 0.81613 1.21339 1.21671 1.21238 1.47717 1.54726 1.09969 1.20291 1.21587 1.01185 0.80237 1.02455 1.20064 0.77596 0.87980 0.83303 1.90624 1.52289 1.70054 1.27215 1.22412 0.99746 0.93569 0.92075 0.91348 1.23001 0.96191 0.83290 0.98329 1.88044 1.85067 1.24488 1.31579 1.22715 0.95955 0.98731 0.84478 1.23449 0.99306 0.87819 1.02267 1.61951 1.39854 1.16214 1.05116 1.23533 0.93982 1.04671 0.91271 1.21932 0.83144 0.75234 0.98339 1.92883 1.96508 1.33998 1.95452 1.93030 1.42236 1.88837 1.93031 0.91052 0.92701 0.91857 0.94871 0.95537 0.77836 0.93262 0.91424 0.91799 0.90887 0.85733 0.90258 0.88441 0.91909 0.93815 0.87341 0.85482 0.92507 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.26 37.15 0.34 -1.38 16 2 C 0.11 1.65 2.13 -67.93 -0.14 1.51 16 3 H 0.09 1.37 4.50 -51.93 -0.23 1.14 16 4 C 0.14 2.56 5.45 -4.04 -0.02 2.53 16 5 N -0.73 -17.45 4.94 -59.91 -0.30 -17.75 16 6 C -0.25 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 8 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 9 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 10 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.59 -9.62 2.20 -173.93 -0.38 -10.00 16 15 C 0.09 1.35 9.50 59.85 0.57 1.92 16 16 C 0.52 9.25 6.41 -10.99 -0.07 9.18 16 17 O -0.53 -10.49 13.80 5.55 0.08 -10.41 16 18 C 0.03 0.55 1.52 -68.75 -0.10 0.44 16 19 H 0.07 0.99 6.99 -51.93 -0.36 0.63 16 20 C 0.07 1.33 5.15 37.21 0.19 1.52 16 21 O -0.37 -6.77 10.83 -35.23 -0.38 -7.15 16 22 C 0.06 0.86 7.01 37.21 0.26 1.12 16 23 C 0.00 -0.01 4.59 -3.71 -0.02 -0.03 16 24 N -0.51 -7.73 4.21 -227.72 -0.96 -8.69 16 25 C -0.01 -0.08 4.98 -3.83 -0.02 -0.09 16 26 C 0.27 2.85 5.15 37.16 0.19 3.04 16 27 F -0.21 -2.30 14.02 2.25 0.03 -2.27 16 28 F -0.19 -2.65 17.00 2.25 0.04 -2.61 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.66 6.89 -51.93 -0.36 0.30 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.49 7.73 -51.93 -0.40 0.08 16 34 H 0.38 9.56 4.58 -40.82 -0.19 9.37 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.79 6.74 -51.93 -0.35 0.44 16 38 H 0.07 1.11 7.23 -51.93 -0.38 0.73 16 39 H 0.13 2.58 4.05 -51.93 -0.21 2.37 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 1.40 5.17 -51.92 -0.27 1.14 16 45 H 0.13 1.77 5.76 -51.93 -0.30 1.47 16 46 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.71 364.76 -6.56 -39.27 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.82 Total: 11.14 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 0.93 Total: 12.61 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.91 Total: -63.22 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.30 Total: -17.57 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.07 Total: -4.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.71 -6.56 -39.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.848 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds