Wall clock time and date at job start Tue Mar 31 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47600 * 2 1 4 4 C 1.53010 * 109.47067 * 120.00286 * 2 1 3 5 5 N 1.46499 * 109.47104 * 174.99910 * 4 2 1 6 6 C 1.36929 * 119.99955 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00470 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99803 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47092 * 59.99950 * 10 8 6 12 12 H 1.48497 * 109.46840 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47138 * 299.99839 * 10 8 6 14 14 N 1.46496 * 109.47209 * 239.99994 * 2 1 3 15 15 C 1.46500 * 119.99821 * 294.51288 * 14 2 1 16 16 C 1.34771 * 120.00451 * 114.51194 * 14 2 1 17 17 O 1.21284 * 120.00429 * 183.92609 * 16 14 2 18 18 C 1.50705 * 119.99770 * 3.64203 * 16 14 2 19 19 H 1.09000 * 109.51057 * 312.93307 * 18 16 14 20 20 C 1.53097 * 109.50174 * 73.01549 * 18 16 14 21 21 O 1.43018 * 109.25823 * 176.78275 * 20 18 16 22 22 C 1.43021 * 113.73765 * 301.33025 * 21 20 18 23 23 C 1.53097 * 109.25445 * 58.67178 * 22 21 20 24 24 N 1.47011 * 109.50776 * 192.79898 * 18 16 14 25 25 C 1.46895 * 111.00258 * 57.67384 * 24 18 16 26 26 C 1.53002 * 109.47241 * 175.24408 * 25 24 18 27 27 F 1.39902 * 109.47036 * 293.24967 * 26 25 24 28 28 F 1.39898 * 109.47185 * 53.25375 * 26 25 24 29 29 H 1.09007 * 109.46813 * 300.00080 * 1 2 3 30 30 H 1.08997 * 109.47232 * 59.99566 * 1 2 3 31 31 H 1.08997 * 109.47618 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46460 * 294.99754 * 4 2 1 33 33 H 1.08993 * 109.46623 * 54.99604 * 4 2 1 34 34 H 0.97000 * 120.00086 * 359.97438 * 5 4 2 35 35 H 0.96996 * 119.99916 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.47441 * 274.88196 * 15 14 2 37 37 H 1.09000 * 109.47439 * 34.88359 * 15 14 2 38 38 H 1.09004 * 109.47373 * 154.88823 * 15 14 2 39 39 H 1.08995 * 109.51356 * 296.71957 * 20 18 16 40 40 H 1.09001 * 109.50711 * 56.85184 * 20 18 16 41 41 H 1.09003 * 109.50387 * 178.59876 * 22 21 20 42 42 H 1.08994 * 109.50710 * 298.68999 * 22 21 20 43 43 H 1.09003 * 109.50962 * 63.08625 * 23 22 21 44 44 H 1.09008 * 109.50284 * 183.17106 * 23 22 21 45 45 H 1.08994 * 109.47267 * 295.24973 * 25 24 18 46 46 H 1.09005 * 109.46880 * 55.24443 * 25 24 18 47 47 H 1.09003 * 109.47032 * 173.25575 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1838 -1.4381 2.2072 7 1 3.6468 -1.8426 3.0525 8 6 5.5672 -1.5372 2.1518 9 7 6.2218 -1.0439 1.1220 10 14 6.5001 -2.3709 3.5391 11 1 6.0443 -3.7785 3.6662 12 1 7.9548 -2.3471 3.2416 13 1 6.2427 -1.6504 4.8117 14 7 2.0183 -0.6906 -1.1961 15 6 1.7662 -2.1233 -1.3689 16 6 2.6995 -0.0079 -2.1376 17 8 3.0418 -0.5627 -3.1603 18 6 3.0302 1.4465 -1.9223 19 1 2.1419 1.9743 -1.5752 20 6 4.1395 1.5687 -0.8742 21 8 4.5014 2.9447 -0.7286 22 6 4.9553 3.5520 -1.9413 23 6 3.8542 3.4499 -3.0000 24 7 3.4907 2.0377 -3.1870 25 6 2.4749 1.8902 -4.2378 26 6 2.9383 2.6185 -5.5011 27 9 2.9729 3.9960 -5.2589 28 9 4.2175 2.1745 -5.8526 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9823 -0.4629 0.4316 35 1 7.1885 -1.1135 1.0832 36 1 2.5397 -2.6932 -0.8539 37 1 0.7912 -2.3738 -0.9508 38 1 1.7801 -2.3693 -2.4308 39 1 3.7822 1.1834 0.0807 40 1 5.0091 0.9958 -1.1961 41 1 5.1878 4.6011 -1.7580 42 1 5.8490 3.0373 -2.2938 43 1 2.9793 4.0104 -2.6706 44 1 4.2162 3.8611 -3.9424 45 1 2.3326 0.8326 -4.4597 46 1 1.5332 2.3195 -3.8956 47 1 2.2447 2.4102 -6.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698839015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:48 Heat of formation + Delta-G solvation = -156.148956 kcal Electronic energy + Delta-G solvation = -32384.682124 eV Core-core repulsion = 27853.060828 eV Total energy + Delta-G solvation = -4531.621296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.02759 -47.92376 -41.92674 -39.87731 -38.32194 -36.78311 -35.75832 -33.22489 -32.90158 -31.63894 -31.38919 -28.47513 -27.41229 -27.09333 -25.56748 -24.55440 -23.47031 -22.84639 -21.88216 -20.25174 -19.14955 -18.84032 -18.51671 -18.23427 -17.84785 -17.23637 -17.13159 -16.68486 -16.54903 -16.19983 -15.92022 -15.75276 -15.42579 -15.40202 -15.24739 -15.00591 -14.80785 -14.37333 -14.21423 -14.19422 -13.73911 -13.70346 -13.32683 -13.23105 -13.13755 -13.04262 -12.97671 -12.81425 -12.73656 -12.58855 -12.47564 -12.19572 -12.08547 -11.79531 -11.74220 -11.46941 -10.96352 -10.92640 -10.59024 -9.71649 -9.49208 -8.97965 -7.92116 -5.21104 1.39917 1.47476 1.49828 1.56022 1.83273 2.44512 2.56546 2.76212 2.87119 3.27799 3.36035 3.43024 3.55894 3.64837 3.69712 3.77925 3.88951 3.98271 4.01440 4.18751 4.19051 4.20295 4.42952 4.44072 4.45382 4.53060 4.63561 4.68413 4.70247 4.78599 4.85219 4.85767 4.89591 4.96673 4.99049 5.10533 5.31057 5.46206 5.52858 5.60180 5.77204 5.98773 6.28333 6.31826 7.06494 7.36412 8.11745 8.33195 9.29938 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.004179 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.905807 B = 6698.245524 C = 7570.577908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 H 0.089 0.911 4 C 0.134 3.866 5 N -0.747 5.747 6 C -0.244 4.244 7 H 0.079 0.921 8 C -0.071 4.071 9 N -0.964 5.964 10 Si 0.969 3.031 11 H -0.279 1.279 12 H -0.301 1.301 13 H -0.276 1.276 14 N -0.593 5.593 15 C 0.091 3.909 16 C 0.518 3.482 17 O -0.555 6.555 18 C 0.047 3.953 19 H 0.094 0.906 20 C 0.083 3.917 21 O -0.387 6.387 22 C 0.050 3.950 23 C 0.007 3.993 24 N -0.533 5.533 25 C -0.007 4.007 26 C 0.266 3.734 27 F -0.208 7.208 28 F -0.213 7.213 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.032 0.968 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.031 0.969 41 H 0.130 0.870 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 9.454 -10.572 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.107 0.893 4 C 0.007 3.993 5 N -0.393 5.393 6 C -0.376 4.376 7 H 0.097 0.903 8 C -0.264 4.264 9 N -0.615 5.615 10 Si 0.799 3.201 11 H -0.206 1.206 12 H -0.228 1.228 13 H -0.202 1.202 14 N -0.325 5.325 15 C -0.052 4.052 16 C 0.305 3.695 17 O -0.434 6.434 18 C -0.064 4.064 19 H 0.111 0.889 20 C 0.005 3.995 21 O -0.306 6.306 22 C -0.026 4.026 23 C -0.119 4.119 24 N -0.259 5.259 25 C -0.135 4.135 26 C 0.213 3.787 27 F -0.189 7.189 28 F -0.195 7.195 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.213 0.787 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.049 0.951 41 H 0.147 0.853 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.135 0.865 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.882 8.929 -10.915 20.503 hybrid contribution 0.903 -0.337 0.663 1.170 sum -13.979 8.592 -10.252 19.348 Atomic orbital electron populations 1.22045 0.90815 1.03876 1.03899 1.21785 0.97026 0.96416 0.83536 0.89274 1.21296 0.84138 0.98283 0.95603 1.42747 1.02054 1.70100 1.24360 1.19560 0.89744 1.28715 0.99602 0.90319 1.25509 0.97622 1.03016 1.00269 1.69810 1.06888 1.52610 1.32150 0.85280 0.77043 0.78561 0.79258 1.20559 1.22792 1.20240 1.47843 1.54137 1.10247 1.20264 1.21580 1.01778 0.79518 1.02286 1.20376 0.77232 0.88661 0.83205 1.90605 1.53389 1.70805 1.28604 1.22181 0.99144 0.93103 0.92014 0.88892 1.22579 0.95310 0.83335 0.98270 1.88010 1.85313 1.23650 1.33596 1.22992 0.95868 0.99840 0.83915 1.23420 0.99274 0.87190 1.02058 1.61886 1.41644 1.17192 1.05193 1.23572 0.94409 1.04333 0.91147 1.22325 0.82768 0.74742 0.98906 1.92872 1.96446 1.34057 1.95525 1.92987 1.44145 1.89154 1.93173 0.89174 0.91021 0.90996 0.93758 0.94867 0.78708 0.94334 0.94917 0.88222 0.90933 0.87506 0.95096 0.85250 0.93777 0.92140 0.86472 0.87086 0.89871 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.26 71.98 0.67 -1.98 16 2 C 0.12 3.21 2.13 44.99 0.10 3.31 16 3 H 0.09 2.53 4.50 -2.38 -0.01 2.52 16 4 C 0.13 4.73 5.45 86.38 0.47 5.20 16 5 N -0.75 -36.09 4.94 -343.44 -1.70 -37.79 16 6 C -0.24 -13.28 9.99 84.04 0.84 -12.44 16 7 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 9 N -0.96 -59.68 13.06 21.65 0.28 -59.40 16 10 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 N -0.59 -18.77 2.20 -822.57 -1.81 -20.59 16 15 C 0.09 2.74 9.50 127.77 1.21 3.95 16 16 C 0.52 18.34 6.41 87.66 0.56 18.90 16 17 O -0.56 -22.65 13.80 -3.04 -0.04 -22.69 16 18 C 0.05 1.52 1.52 44.18 0.07 1.59 16 19 H 0.09 2.50 6.99 -2.39 -0.02 2.48 16 20 C 0.08 3.30 5.15 72.01 0.37 3.67 16 21 O -0.39 -14.24 10.83 -148.98 -1.61 -15.85 16 22 C 0.05 1.47 7.01 72.01 0.50 1.98 16 23 C 0.01 0.19 4.59 86.31 0.40 0.59 16 24 N -0.53 -15.93 4.21 -874.38 -3.68 -19.62 16 25 C -0.01 -0.15 4.98 86.30 0.43 0.28 16 26 C 0.27 5.04 5.15 71.98 0.37 5.41 16 27 F -0.21 -4.03 14.02 44.97 0.63 -3.40 16 28 F -0.21 -5.76 17.00 44.97 0.76 -5.00 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.19 6.89 -2.39 -0.02 1.17 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.15 7.73 -2.39 -0.02 1.13 16 34 H 0.38 19.42 4.58 -92.71 -0.42 18.99 16 35 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 2.24 6.74 -2.39 -0.02 2.23 16 38 H 0.07 2.19 7.23 -2.38 -0.02 2.17 16 39 H 0.11 4.60 4.05 -2.39 -0.01 4.59 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.13 2.89 8.14 -2.39 -0.02 2.88 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.12 2.83 5.17 -2.38 -0.01 2.82 16 45 H 0.11 2.97 5.76 -2.39 -0.01 2.96 16 46 H 0.08 1.46 8.13 -2.38 -0.02 1.44 16 47 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.50 364.76 1.89 -72.61 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.58 Total: 36.43 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.45 Total: 26.83 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -6.91 Total: -137.39 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.65 Total: -38.54 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 1.40 Total: -8.40 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.50 1.89 -72.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698839015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.535 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds