Wall clock time and date at job start Tue Mar 31 2020 19:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47182 * 2 1 4 4 C 1.35846 * 126.13379 * 89.97510 * 3 2 1 5 5 N 1.30178 * 109.00316 * 179.97438 * 4 3 2 6 6 C 1.35756 * 108.86241 * 0.02562 * 5 4 3 7 7 C 1.47331 * 126.23143 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99583 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00077 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 C 1.35374 * 126.13408 * 270.25605 * 3 2 1 29 29 H 1.08999 * 109.47305 * 300.00824 * 1 2 3 30 30 H 1.09009 * 109.46651 * 60.00303 * 1 2 3 31 31 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47067 * 239.99579 * 2 1 3 33 33 H 1.08999 * 109.46691 * 119.99806 * 2 1 3 34 34 H 1.07999 * 125.50344 * 359.96501 * 4 3 2 35 35 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 37 37 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 38 38 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 39 39 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 40 40 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 41 41 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 42 42 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 43 43 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 44 44 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 46 46 H 1.08000 * 126.57067 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1366 1.0971 5 7 2.7003 3.3092 0.7137 6 6 2.7143 3.3478 -0.6432 7 6 3.1193 4.4924 -1.4777 8 8 3.0874 4.4024 -2.6902 9 7 3.5252 5.6392 -0.8975 10 6 3.9274 6.7775 -1.7273 11 6 4.3410 7.9437 -0.8274 12 1 5.3254 7.8037 -0.3807 13 6 4.1579 9.3186 -1.4852 14 6 3.6908 9.7352 -0.0834 15 7 3.3035 8.3309 0.1465 16 6 3.6676 7.8997 1.5029 17 6 2.5100 8.1457 2.4359 18 8 1.4825 8.6318 2.0125 19 7 2.6163 7.8255 3.7407 20 6 1.5629 8.0487 4.5894 21 1 0.6481 8.4816 4.2124 22 6 1.6725 7.7181 5.9345 23 7 0.6630 7.9325 6.7481 24 14 3.2545 6.9688 6.5864 25 1 4.1673 8.0514 7.0339 26 1 2.9444 6.0774 7.7329 27 1 3.9096 6.1821 5.5107 28 6 2.2798 2.1354 -1.0933 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.1706 1.8161 2.1221 35 1 3.5510 5.7108 0.0695 36 1 3.0908 7.0823 -2.3562 37 1 4.7689 6.4887 -2.3571 38 1 3.3759 9.3498 -2.2438 39 1 5.0867 9.7910 -1.8049 40 1 2.8450 10.4227 -0.0941 41 1 4.5009 10.0737 0.5625 42 1 3.9076 6.8366 1.4941 43 1 4.5351 8.4653 1.8433 44 1 3.4379 7.4364 4.0792 45 1 0.7395 7.7021 7.6872 46 1 2.1681 1.8344 -2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699639492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:34 Heat of formation + Delta-G solvation = 38.041004 kcal Electronic energy + Delta-G solvation = -28864.499830 eV Core-core repulsion = 24791.988429 eV Total energy + Delta-G solvation = -4072.511401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29548 -40.43656 -38.90049 -37.84529 -35.27297 -34.37170 -33.86185 -31.65438 -30.89222 -30.60009 -29.93327 -28.17536 -25.89141 -24.53543 -23.54401 -23.51233 -22.34092 -21.04730 -20.16410 -19.59545 -19.30455 -18.29971 -18.06569 -16.47068 -16.17418 -16.04005 -15.76912 -15.48835 -15.06363 -14.90799 -14.77898 -14.66151 -14.17763 -14.07799 -13.93468 -13.61228 -13.47393 -13.22025 -12.91703 -12.69290 -12.56599 -12.51765 -12.15830 -11.89067 -11.83637 -11.54243 -11.35488 -11.13331 -10.86910 -10.54557 -10.53615 -10.34261 -9.94148 -9.91531 -9.90668 -9.49194 -8.97194 -8.82456 -8.62985 -8.26109 -8.10215 -6.24746 -3.75323 1.53439 2.36576 2.42496 3.07623 3.10560 3.18184 3.32292 3.65753 3.81373 3.96786 4.15774 4.18425 4.35861 4.46022 4.47723 4.56904 4.72221 4.74545 4.85863 4.98086 5.08207 5.15099 5.17498 5.20878 5.31243 5.35397 5.43688 5.45145 5.57821 5.61472 5.67496 5.79509 5.90375 5.91717 5.94623 6.04055 6.19992 6.33620 6.43831 6.64694 6.86361 7.14835 7.56609 7.64997 7.85877 8.21509 8.39359 8.67812 9.02749 9.49907 9.92611 10.88722 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007336 B = 0.004120 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.717340 B = 6794.708590 C = 9893.895057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 N -0.458 5.458 4 C 0.189 3.811 5 N -0.458 5.458 6 C -0.063 4.063 7 C 0.605 3.395 8 O -0.555 6.555 9 N -0.707 5.707 10 C 0.141 3.859 11 C 0.004 3.996 12 H 0.082 0.918 13 C -0.133 4.133 14 C 0.004 3.996 15 N -0.432 5.432 16 C 0.004 3.996 17 C 0.459 3.541 18 O -0.554 6.554 19 N -0.594 5.594 20 C -0.300 4.300 21 H 0.118 0.882 22 C 0.041 3.959 23 N -0.885 5.885 24 Si 0.878 3.122 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.268 1.268 28 C 0.031 3.969 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.211 0.789 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.369 0.631 45 H 0.272 0.728 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -14.309 -14.406 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.141 5.141 4 C -0.095 4.095 5 N -0.176 5.176 6 C -0.192 4.192 7 C 0.391 3.609 8 O -0.434 6.434 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.106 4.106 12 H 0.100 0.900 13 C -0.171 4.171 14 C -0.125 4.125 15 N -0.154 5.154 16 C -0.128 4.128 17 C 0.244 3.756 18 O -0.435 6.435 19 N -0.234 5.234 20 C -0.429 4.429 21 H 0.136 0.864 22 C -0.162 4.162 23 N -0.525 5.525 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.203 1.203 27 H -0.193 1.193 28 C -0.108 4.108 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.202 0.798 45 H 0.082 0.918 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.095 -13.722 -14.858 21.785 hybrid contribution 1.725 -1.177 1.214 2.416 sum 9.819 -14.899 -13.644 22.462 Atomic orbital electron populations 1.22197 0.93704 1.03388 1.03790 1.21952 0.95983 0.79353 1.04978 1.45572 1.48574 1.13100 1.06851 1.25234 1.03264 0.87308 0.93657 1.70675 1.17729 1.18965 1.10208 1.20572 1.12450 0.95492 0.90675 1.16879 0.76386 0.81382 0.86247 1.90759 1.55896 1.83307 1.13423 1.45720 1.66358 1.12331 1.11376 1.21328 1.00165 0.84044 0.92759 1.23781 0.95749 0.95479 0.95600 0.89979 1.23153 1.02058 0.94369 0.97491 1.23757 1.00390 0.92985 0.95349 1.68865 1.37988 1.05627 1.02964 1.22610 0.97349 1.01416 0.91464 1.19482 0.89221 0.84519 0.82370 1.90572 1.30525 1.46683 1.75718 1.42195 1.15597 1.57771 1.07806 1.19417 0.95378 1.39196 0.88873 0.86389 1.25008 0.97440 0.97914 0.95800 1.69626 1.30348 1.47681 1.04871 0.86694 0.83548 0.79814 0.79519 1.19775 1.20277 1.19340 1.22516 1.03210 0.91895 0.93148 0.91345 0.91624 0.90340 0.88788 0.88391 0.77211 0.75362 0.90661 0.91233 0.88495 0.90421 0.89050 0.91417 0.89655 0.92105 0.79832 0.91757 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.10 0.49 6.84 -4.04 -0.03 0.46 16 3 N -0.46 -4.29 2.72 -118.36 -0.32 -4.61 16 4 C 0.19 2.16 12.55 -89.90 -1.13 1.03 16 5 N -0.46 -6.99 11.01 -11.03 -0.12 -7.11 16 6 C -0.06 -0.94 6.98 -83.09 -0.58 -1.52 16 7 C 0.60 9.93 7.81 -12.56 -0.10 9.83 16 8 O -0.56 -9.98 16.88 5.26 0.09 -9.89 16 9 N -0.71 -10.86 5.46 -61.41 -0.34 -11.20 16 10 C 0.14 1.87 5.81 -4.04 -0.02 1.84 16 11 C 0.00 0.05 3.25 -71.44 -0.23 -0.18 16 12 H 0.08 0.87 7.91 -51.92 -0.41 0.46 16 13 C -0.13 -1.41 8.00 -26.20 -0.21 -1.62 16 14 C 0.00 0.06 7.69 -7.55 -0.06 0.00 16 15 N -0.43 -7.04 5.39 -237.96 -1.28 -8.32 16 16 C 0.00 0.07 5.04 -4.97 -0.03 0.04 16 17 C 0.46 10.83 7.83 -10.98 -0.09 10.74 16 18 O -0.55 -15.56 16.01 5.54 0.09 -15.47 16 19 N -0.59 -14.53 5.09 -10.96 -0.06 -14.59 16 20 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.20 13.96 55.50 0.77 -25.43 16 24 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 C 0.03 0.36 11.26 -16.64 -0.19 0.18 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.21 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.41 6.55 5.91 -40.82 -0.24 6.31 16 36 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.04 7.94 -51.93 -0.41 0.62 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.07 0.84 7.44 -51.93 -0.39 0.46 16 42 H 0.09 1.36 6.25 -51.93 -0.32 1.03 16 43 H 0.06 0.89 7.35 -51.93 -0.38 0.51 16 44 H 0.37 7.96 5.76 -40.82 -0.24 7.73 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -38.46 387.33 -9.15 -47.61 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.58 Total: 15.71 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -2.52 Total: 12.52 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.34 Total: -71.25 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.18 Total: -25.36 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.46 -9.15 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699639492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.647 kcal (2) G-P(sol) polarization free energy of solvation -38.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds