Wall clock time and date at job start Tue Mar 31 2020 19:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47182 * 2 1 4 4 C 1.35846 * 126.13379 * 89.97510 * 3 2 1 5 5 N 1.30178 * 109.00316 * 179.97438 * 4 3 2 6 6 C 1.35756 * 108.86241 * 0.02562 * 5 4 3 7 7 C 1.47331 * 126.23143 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99583 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00077 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 C 1.35374 * 126.13408 * 270.25605 * 3 2 1 29 29 H 1.08999 * 109.47305 * 300.00824 * 1 2 3 30 30 H 1.09009 * 109.46651 * 60.00303 * 1 2 3 31 31 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47067 * 239.99579 * 2 1 3 33 33 H 1.08999 * 109.46691 * 119.99806 * 2 1 3 34 34 H 1.07999 * 125.50344 * 359.96501 * 4 3 2 35 35 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 37 37 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 38 38 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 39 39 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 40 40 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 41 41 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 42 42 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 43 43 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 44 44 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 46 46 H 1.08000 * 126.57067 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1366 1.0971 5 7 2.7003 3.3092 0.7137 6 6 2.7143 3.3478 -0.6432 7 6 3.1193 4.4924 -1.4777 8 8 3.0874 4.4024 -2.6902 9 7 3.5252 5.6392 -0.8975 10 6 3.9274 6.7775 -1.7273 11 6 4.3410 7.9437 -0.8274 12 1 5.3254 7.8037 -0.3807 13 6 4.1579 9.3186 -1.4852 14 6 3.6908 9.7352 -0.0834 15 7 3.3035 8.3309 0.1465 16 6 3.6676 7.8997 1.5029 17 6 2.5100 8.1457 2.4359 18 8 1.4825 8.6318 2.0125 19 7 2.6163 7.8255 3.7407 20 6 1.5629 8.0487 4.5894 21 1 0.6481 8.4816 4.2124 22 6 1.6725 7.7181 5.9345 23 7 0.6630 7.9325 6.7481 24 14 3.2545 6.9688 6.5864 25 1 4.1673 8.0514 7.0339 26 1 2.9444 6.0774 7.7329 27 1 3.9096 6.1821 5.5107 28 6 2.2798 2.1354 -1.0933 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.1706 1.8161 2.1221 35 1 3.5510 5.7108 0.0695 36 1 3.0908 7.0823 -2.3562 37 1 4.7689 6.4887 -2.3571 38 1 3.3759 9.3498 -2.2438 39 1 5.0867 9.7910 -1.8049 40 1 2.8450 10.4227 -0.0941 41 1 4.5009 10.0737 0.5625 42 1 3.9076 6.8366 1.4941 43 1 4.5351 8.4653 1.8433 44 1 3.4379 7.4364 4.0792 45 1 0.7395 7.7021 7.6872 46 1 2.1681 1.8344 -2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699639492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:33 Heat of formation + Delta-G solvation = 6.843818 kcal Electronic energy + Delta-G solvation = -28865.852642 eV Core-core repulsion = 24791.988429 eV Total energy + Delta-G solvation = -4073.864213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.16419 -41.59651 -40.17114 -39.63343 -35.98860 -35.95949 -35.48487 -33.75537 -32.19781 -31.31345 -30.90323 -29.18891 -27.61801 -25.31272 -25.17943 -24.33585 -23.36252 -21.82748 -21.33408 -21.20292 -20.57722 -20.27273 -18.94151 -17.73634 -17.37536 -17.25353 -16.97276 -16.71871 -16.53526 -16.31946 -15.82836 -15.59442 -15.26274 -15.21590 -14.95821 -14.83471 -14.65212 -14.56912 -14.38516 -14.13279 -13.96586 -13.51811 -13.09256 -12.99192 -12.92774 -12.63066 -12.42683 -12.32421 -12.23459 -12.02323 -11.92280 -11.65962 -11.48991 -11.34338 -11.01909 -10.77837 -10.44906 -10.22606 -10.11784 -9.72167 -9.58833 -8.39709 -6.00236 0.56563 1.31213 1.35862 1.42391 1.45130 1.70458 1.97313 2.24165 2.26072 2.54935 2.68113 3.15763 3.23213 3.44374 3.54110 3.75501 3.80209 3.88229 3.99063 4.08792 4.12058 4.17982 4.24196 4.32246 4.37595 4.40334 4.41490 4.45419 4.64267 4.69779 4.81865 4.84875 4.88761 5.02490 5.11409 5.21618 5.23030 5.33505 5.44651 5.52440 5.55583 5.93455 6.07946 6.09735 6.46570 6.61623 6.85995 6.90299 7.22253 7.41427 7.99937 8.78351 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007336 B = 0.004120 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.717340 B = 6794.708590 C = 9893.895057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.448 5.448 4 C 0.190 3.810 5 N -0.502 5.502 6 C -0.105 4.105 7 C 0.597 3.403 8 O -0.582 6.582 9 N -0.708 5.708 10 C 0.139 3.861 11 C 0.016 3.984 12 H 0.112 0.888 13 C -0.111 4.111 14 C -0.004 4.004 15 N -0.476 5.476 16 C 0.019 3.981 17 C 0.455 3.545 18 O -0.609 6.609 19 N -0.591 5.591 20 C -0.327 4.327 21 H 0.051 0.949 22 C -0.013 4.013 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.233 1.233 28 C 0.045 3.955 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.241 0.759 35 H 0.406 0.594 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 -16.712 -14.521 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.129 5.129 4 C -0.094 4.094 5 N -0.221 5.221 6 C -0.233 4.233 7 C 0.384 3.616 8 O -0.463 6.463 9 N -0.357 5.357 10 C 0.015 3.985 11 C -0.094 4.094 12 H 0.130 0.870 13 C -0.149 4.149 14 C -0.133 4.133 15 N -0.199 5.199 16 C -0.113 4.113 17 C 0.243 3.757 18 O -0.493 6.493 19 N -0.233 5.233 20 C -0.456 4.456 21 H 0.069 0.931 22 C -0.212 4.212 23 N -0.577 5.577 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.156 1.156 28 C -0.097 4.097 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.256 0.744 35 H 0.242 0.758 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 11.852 -16.137 -14.987 25.009 hybrid contribution 0.367 -0.441 1.216 1.345 sum 12.219 -16.577 -13.771 24.774 Atomic orbital electron populations 1.22188 0.93880 1.04484 1.02286 1.22356 0.95706 0.77072 1.07438 1.45825 1.47148 1.14310 1.05572 1.25804 1.01816 0.86649 0.95181 1.70575 1.19769 1.21250 1.10521 1.20611 1.15324 0.96413 0.91000 1.17217 0.76058 0.82073 0.86218 1.90719 1.57345 1.83919 1.14358 1.45801 1.66047 1.12622 1.11277 1.21460 1.00122 0.83992 0.92920 1.23858 0.95697 0.95534 0.94274 0.86995 1.23091 1.03402 0.92938 0.95479 1.23861 1.00027 0.91361 0.98014 1.68816 1.40741 1.07416 1.02901 1.22503 0.94957 1.03101 0.90720 1.20782 0.90285 0.82094 0.82579 1.90544 1.33411 1.48613 1.76744 1.42015 1.15161 1.58301 1.07852 1.18974 0.95022 1.41052 0.90525 0.93078 1.26089 1.02399 0.97545 0.95141 1.69810 1.33605 1.48621 1.05627 0.85377 0.77492 0.79332 0.79417 1.18036 1.19787 1.15612 1.22802 1.01294 0.91113 0.94444 0.92818 0.93133 0.87950 0.86601 0.85749 0.74350 0.75788 0.92472 0.89397 0.89089 0.86629 0.91955 0.89409 0.87958 0.88396 0.77620 0.91166 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 71.98 0.74 -0.66 16 2 C 0.09 0.64 6.84 86.38 0.59 1.23 16 3 N -0.45 -7.52 2.72 -528.39 -1.44 -8.96 16 4 C 0.19 4.06 12.55 180.10 2.26 6.32 16 5 N -0.50 -15.17 11.01 -188.81 -2.08 -17.25 16 6 C -0.11 -3.18 6.98 40.51 0.28 -2.90 16 7 C 0.60 19.86 7.81 86.64 0.68 20.54 16 8 O -0.58 -21.23 16.88 -4.10 -0.07 -21.30 16 9 N -0.71 -21.59 5.46 -466.46 -2.55 -24.14 16 10 C 0.14 3.52 5.81 86.38 0.50 4.02 16 11 C 0.02 0.34 3.25 42.18 0.14 0.48 16 12 H 0.11 1.85 7.91 -2.38 -0.02 1.83 16 13 C -0.11 -2.08 8.00 30.94 0.25 -1.83 16 14 C 0.00 -0.10 7.69 83.57 0.64 0.54 16 15 N -0.48 -15.07 5.39 -906.76 -4.89 -19.95 16 16 C 0.02 0.62 5.04 85.56 0.43 1.06 16 17 C 0.46 21.85 7.83 87.66 0.69 22.54 16 18 O -0.61 -36.15 16.01 -3.08 -0.05 -36.20 16 19 N -0.59 -29.13 5.09 -306.98 -1.56 -30.69 16 20 C -0.33 -19.76 10.16 84.04 0.85 -18.91 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.94 -57.32 13.96 21.66 0.30 -57.02 16 24 Si 0.96 39.43 27.74 68.60 1.90 41.34 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 28 C 0.04 1.00 11.26 83.72 0.94 1.95 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.24 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.41 12.82 5.91 -92.71 -0.55 12.27 16 36 H 0.06 1.65 7.88 -2.38 -0.02 1.63 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.83 7.94 -2.39 -0.02 1.81 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 1.93 7.44 -2.39 -0.02 1.92 16 42 H 0.10 3.02 6.25 -2.39 -0.01 3.01 16 43 H 0.10 2.50 7.35 -2.38 -0.02 2.48 16 44 H 0.39 15.90 5.76 -92.71 -0.53 15.37 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -93.03 387.33 -1.09 -94.12 By element: Atomic # 1 Polarization: 46.10 SS G_CDS: -0.12 Total: 45.98 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 9.46 Total: 34.08 kcal Atomic # 7 Polarization: -145.80 SS G_CDS: -12.21 Total: -158.01 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -0.12 Total: -57.51 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.34 kcal Total: -93.03 -1.09 -94.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699639492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.961 kcal (2) G-P(sol) polarization free energy of solvation -93.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds