Wall clock time and date at job start Tue Mar 31 2020 19:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47471 * 2 1 4 4 C 1.35848 * 126.13628 * 89.97309 * 3 2 1 5 5 N 1.30173 * 109.00382 * 180.02562 * 4 3 2 6 6 C 1.35767 * 108.86408 * 359.97438 * 5 4 3 7 7 C 1.47324 * 126.23326 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99936 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99763 * 0.29609 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72654 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.74830 * 284.23175 * 11 10 9 13 13 C 1.53512 * 113.47803 * 153.37839 * 11 10 9 14 14 C 1.53514 * 83.57720 * 219.21219 * 13 11 10 15 15 N 1.47479 * 87.93300 * 26.02239 * 14 13 11 16 16 C 1.46897 * 111.00314 * 221.29439 * 15 14 13 17 17 C 1.50692 * 109.47561 * 265.97461 * 16 15 14 18 18 O 1.21298 * 120.00063 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00363 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00195 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00166 * 359.97438 * 20 19 17 22 22 C 1.38959 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99884 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99732 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47264 * 90.00113 * 24 22 20 26 26 H 1.48505 * 109.47100 * 209.99756 * 24 22 20 27 27 H 1.48497 * 109.47419 * 329.99623 * 24 22 20 28 28 C 1.35380 * 126.13067 * 270.28826 * 3 2 1 29 29 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47006 * 300.00261 * 1 2 3 31 31 H 1.08999 * 109.46991 * 59.99843 * 1 2 3 32 32 H 1.08997 * 109.47176 * 239.99489 * 2 1 3 33 33 H 1.08999 * 109.46991 * 120.00157 * 2 1 3 34 34 H 1.07996 * 125.49990 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00483 * 359.73087 * 9 7 6 36 36 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 37 37 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 38 38 H 1.08996 * 114.17175 * 332.85733 * 13 11 10 39 39 H 1.08995 * 114.16912 * 105.56114 * 13 11 10 40 40 H 1.08999 * 113.47159 * 271.26054 * 14 13 11 41 41 H 1.08998 * 113.53225 * 140.80062 * 14 13 11 42 42 H 1.09003 * 109.46723 * 25.97478 * 16 15 14 43 43 H 1.09008 * 109.47150 * 145.96975 * 16 15 14 44 44 H 0.97000 * 120.00223 * 359.97438 * 19 17 16 45 45 H 0.97006 * 119.99733 * 179.97438 * 23 22 20 46 46 H 1.07998 * 126.57070 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2850 2.1366 1.0971 5 7 2.6994 3.3095 0.7137 6 6 2.7139 3.3479 -0.6434 7 6 3.1181 4.4928 -1.4779 8 8 3.0866 4.4026 -2.6903 9 7 3.5279 5.6381 -0.8976 10 6 3.9355 6.7746 -1.7275 11 6 4.3528 7.9395 -0.8276 12 1 3.5015 8.4524 -0.3802 13 6 5.3637 8.8890 -1.4858 14 6 5.9897 8.9163 -0.0843 15 7 5.4020 7.5834 0.1458 16 6 4.8481 7.4793 1.5024 17 6 5.8807 6.8805 2.4221 18 8 6.9712 6.5713 1.9902 19 7 5.5928 6.6886 3.7247 20 6 6.5325 6.1443 4.5615 21 1 7.5034 5.8690 4.1769 22 6 6.2357 5.9469 5.9046 23 7 7.1363 5.4247 6.7066 24 14 4.5567 6.4237 6.5699 25 1 3.6310 5.2686 6.4517 26 1 4.6823 6.8132 7.9975 27 1 4.0220 7.5685 5.7898 28 6 2.2794 2.1355 -1.0934 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1715 1.8158 2.1221 35 1 3.5530 5.7101 0.0694 36 1 4.7767 6.4821 -2.3561 37 1 3.1010 7.0824 -2.3573 38 1 5.9889 8.4189 -2.2447 39 1 4.9397 9.8414 -1.8038 40 1 5.5755 9.6907 0.5612 41 1 7.0796 8.9144 -0.0945 42 1 4.5747 8.4719 1.8603 43 1 3.9634 6.8427 1.4858 44 1 4.7209 6.9362 4.0703 45 1 6.9292 5.2872 7.6443 46 1 2.1678 1.8344 -2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699639499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:38 Heat of formation + Delta-G solvation = 38.223154 kcal Electronic energy + Delta-G solvation = -28867.861988 eV Core-core repulsion = 24795.358485 eV Total energy + Delta-G solvation = -4072.503503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28217 -40.43598 -38.89119 -37.84308 -35.27306 -34.36426 -33.85684 -31.65052 -30.89452 -30.60724 -29.92464 -28.17622 -25.89007 -24.54340 -23.54544 -23.51059 -22.33667 -21.03620 -20.15762 -19.59522 -19.30000 -18.29752 -18.05593 -16.48352 -16.14461 -16.04322 -15.72444 -15.52747 -15.06289 -14.90633 -14.77418 -14.65486 -14.22966 -14.06286 -13.94206 -13.59031 -13.43217 -13.21426 -13.00192 -12.67195 -12.57704 -12.52471 -12.15046 -11.89540 -11.86115 -11.54777 -11.35225 -11.11522 -10.87718 -10.56401 -10.52380 -10.33073 -9.93219 -9.91189 -9.89637 -9.48769 -8.96378 -8.82900 -8.61825 -8.24994 -8.09782 -6.24408 -3.74856 1.54624 2.39559 2.41685 3.06659 3.11347 3.18392 3.32924 3.66938 3.81668 3.96718 4.15966 4.18961 4.36878 4.45496 4.46335 4.56750 4.73753 4.74936 4.86013 4.98210 5.06788 5.12832 5.14934 5.21035 5.30570 5.35461 5.43937 5.44319 5.53984 5.57882 5.66771 5.79177 5.91361 5.91956 5.94356 6.03731 6.19551 6.34837 6.43727 6.65155 6.87626 7.14623 7.57705 7.65372 7.87021 8.22089 8.40267 8.68308 9.03285 9.50403 9.93311 10.89079 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007403 B = 0.004110 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.102247 B = 6810.266341 C = 9958.413255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.190 3.810 5 N -0.457 5.457 6 C -0.063 4.063 7 C 0.605 3.395 8 O -0.555 6.555 9 N -0.707 5.707 10 C 0.141 3.859 11 C 0.004 3.996 12 H 0.082 0.918 13 C -0.132 4.132 14 C 0.003 3.997 15 N -0.432 5.432 16 C 0.004 3.996 17 C 0.459 3.541 18 O -0.554 6.554 19 N -0.594 5.594 20 C -0.300 4.300 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.885 5.885 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.270 1.270 28 C 0.031 3.969 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.211 0.789 35 H 0.410 0.590 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.369 0.631 45 H 0.272 0.728 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 -4.283 -14.275 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.141 5.141 4 C -0.094 4.094 5 N -0.175 5.175 6 C -0.192 4.192 7 C 0.391 3.609 8 O -0.434 6.434 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.106 4.106 12 H 0.100 0.900 13 C -0.170 4.170 14 C -0.125 4.125 15 N -0.154 5.154 16 C -0.129 4.129 17 C 0.244 3.756 18 O -0.434 6.434 19 N -0.234 5.234 20 C -0.429 4.429 21 H 0.136 0.864 22 C -0.162 4.162 23 N -0.525 5.525 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.108 4.108 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.202 0.798 45 H 0.082 0.918 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.506 -4.701 -14.734 21.901 hybrid contribution -2.079 0.258 1.226 2.427 sum -17.585 -4.444 -13.508 22.615 Atomic orbital electron populations 1.22181 0.93844 1.03363 1.03471 1.21957 0.95781 0.79447 1.05214 1.45564 1.48628 1.13048 1.06852 1.25237 1.03176 0.87350 0.93655 1.70678 1.17101 1.19573 1.10190 1.20569 1.12256 0.95672 0.90683 1.16878 0.76459 0.81297 0.86244 1.90758 1.56224 1.82993 1.13425 1.45717 1.65791 1.12896 1.11376 1.21327 0.99811 0.84403 0.92761 1.23787 0.95649 0.95582 0.95608 0.89984 1.23153 0.97467 0.98941 0.97476 1.23775 1.02588 0.90767 0.95419 1.68861 1.15904 1.27655 1.02994 1.22613 0.97972 1.00777 0.91499 1.19480 0.89025 0.84685 0.82376 1.90573 1.24025 1.53677 1.75164 1.42190 1.15084 1.57974 1.08148 1.19418 0.97249 1.36729 0.89456 0.86386 1.25007 0.97779 0.97560 0.95829 1.69627 1.33766 1.43733 1.05409 0.86679 0.84304 0.79042 0.79389 1.19618 1.20349 1.19607 1.22514 1.03280 0.91853 0.93138 0.90346 0.91558 0.91726 0.88716 0.88281 0.77207 0.75355 0.90664 0.91235 0.88463 0.90419 0.91423 0.89070 0.92030 0.89711 0.79848 0.91765 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.10 0.50 6.84 -4.04 -0.03 0.47 16 3 N -0.46 -4.35 2.73 -118.37 -0.32 -4.68 16 4 C 0.19 2.20 12.55 -89.91 -1.13 1.07 16 5 N -0.46 -7.05 11.01 -11.03 -0.12 -7.17 16 6 C -0.06 -0.95 6.98 -83.08 -0.58 -1.53 16 7 C 0.60 10.00 7.81 -12.56 -0.10 9.90 16 8 O -0.56 -10.03 16.88 5.26 0.09 -9.94 16 9 N -0.71 -10.92 5.46 -61.41 -0.34 -11.26 16 10 C 0.14 1.87 5.82 -4.04 -0.02 1.85 16 11 C 0.00 0.05 3.23 -71.42 -0.23 -0.18 16 12 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 13 C -0.13 -1.40 8.00 -26.20 -0.21 -1.61 16 14 C 0.00 0.05 7.71 -7.54 -0.06 -0.01 16 15 N -0.43 -7.04 5.39 -237.92 -1.28 -8.32 16 16 C 0.00 0.06 5.05 -4.98 -0.03 0.04 16 17 C 0.46 10.86 7.85 -10.99 -0.09 10.77 16 18 O -0.55 -15.59 16.01 5.54 0.09 -15.50 16 19 N -0.59 -14.56 5.09 -10.96 -0.06 -14.62 16 20 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.21 13.96 55.50 0.77 -25.44 16 24 Si 0.88 19.69 27.74 -169.99 -4.71 14.98 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 28 C 0.03 0.37 11.26 -16.64 -0.19 0.18 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.21 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.41 6.59 5.93 -40.82 -0.24 6.35 16 36 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.04 7.94 -51.93 -0.41 0.62 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.83 7.42 -51.93 -0.39 0.45 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 43 H 0.08 1.34 6.27 -51.92 -0.33 1.01 16 44 H 0.37 7.97 5.76 -40.82 -0.24 7.74 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -38.51 387.33 -9.15 -47.66 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -6.58 Total: 15.65 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -2.52 Total: 12.79 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.34 Total: -71.48 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.18 Total: -25.44 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.51 -9.15 -47.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699639499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.885 kcal (2) G-P(sol) polarization free energy of solvation -38.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds