Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47471 * 2 1 4 4 C 1.35848 * 126.13628 * 89.97309 * 3 2 1 5 5 N 1.30173 * 109.00382 * 180.02562 * 4 3 2 6 6 C 1.35767 * 108.86408 * 359.97438 * 5 4 3 7 7 C 1.47324 * 126.23326 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99936 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99763 * 0.29609 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72654 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.74830 * 284.23175 * 11 10 9 13 13 C 1.53512 * 113.47803 * 153.37839 * 11 10 9 14 14 C 1.53514 * 83.57720 * 219.21219 * 13 11 10 15 15 N 1.47479 * 87.93300 * 26.02239 * 14 13 11 16 16 C 1.46897 * 111.00314 * 221.29439 * 15 14 13 17 17 C 1.50692 * 109.47561 * 265.97461 * 16 15 14 18 18 O 1.21298 * 120.00063 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00363 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00195 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00166 * 359.97438 * 20 19 17 22 22 C 1.38959 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99884 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99732 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47264 * 90.00113 * 24 22 20 26 26 H 1.48505 * 109.47100 * 209.99756 * 24 22 20 27 27 H 1.48497 * 109.47419 * 329.99623 * 24 22 20 28 28 C 1.35380 * 126.13067 * 270.28826 * 3 2 1 29 29 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47006 * 300.00261 * 1 2 3 31 31 H 1.08999 * 109.46991 * 59.99843 * 1 2 3 32 32 H 1.08997 * 109.47176 * 239.99489 * 2 1 3 33 33 H 1.08999 * 109.46991 * 120.00157 * 2 1 3 34 34 H 1.07996 * 125.49990 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00483 * 359.73087 * 9 7 6 36 36 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 37 37 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 38 38 H 1.08996 * 114.17175 * 332.85733 * 13 11 10 39 39 H 1.08995 * 114.16912 * 105.56114 * 13 11 10 40 40 H 1.08999 * 113.47159 * 271.26054 * 14 13 11 41 41 H 1.08998 * 113.53225 * 140.80062 * 14 13 11 42 42 H 1.09003 * 109.46723 * 25.97478 * 16 15 14 43 43 H 1.09008 * 109.47150 * 145.96975 * 16 15 14 44 44 H 0.97000 * 120.00223 * 359.97438 * 19 17 16 45 45 H 0.97006 * 119.99733 * 179.97438 * 23 22 20 46 46 H 1.07998 * 126.57070 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2850 2.1366 1.0971 5 7 2.6994 3.3095 0.7137 6 6 2.7139 3.3479 -0.6434 7 6 3.1181 4.4928 -1.4779 8 8 3.0866 4.4026 -2.6903 9 7 3.5279 5.6381 -0.8976 10 6 3.9355 6.7746 -1.7275 11 6 4.3528 7.9395 -0.8276 12 1 3.5015 8.4524 -0.3802 13 6 5.3637 8.8890 -1.4858 14 6 5.9897 8.9163 -0.0843 15 7 5.4020 7.5834 0.1458 16 6 4.8481 7.4793 1.5024 17 6 5.8807 6.8805 2.4221 18 8 6.9712 6.5713 1.9902 19 7 5.5928 6.6886 3.7247 20 6 6.5325 6.1443 4.5615 21 1 7.5034 5.8690 4.1769 22 6 6.2357 5.9469 5.9046 23 7 7.1363 5.4247 6.7066 24 14 4.5567 6.4237 6.5699 25 1 3.6310 5.2686 6.4517 26 1 4.6823 6.8132 7.9975 27 1 4.0220 7.5685 5.7898 28 6 2.2794 2.1355 -1.0934 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1715 1.8158 2.1221 35 1 3.5530 5.7101 0.0694 36 1 4.7767 6.4821 -2.3561 37 1 3.1010 7.0824 -2.3573 38 1 5.9889 8.4189 -2.2447 39 1 4.9397 9.8414 -1.8038 40 1 5.5755 9.6907 0.5612 41 1 7.0796 8.9144 -0.0945 42 1 4.5747 8.4719 1.8603 43 1 3.9634 6.8427 1.4858 44 1 4.7209 6.9362 4.0703 45 1 6.9292 5.2872 7.6443 46 1 2.1678 1.8344 -2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699639499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = 7.016721 kcal Electronic energy + Delta-G solvation = -28869.215200 eV Core-core repulsion = 24795.358485 eV Total energy + Delta-G solvation = -4073.856715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.16593 -41.59230 -40.16787 -39.63493 -35.98430 -35.95814 -35.48517 -33.75194 -32.19640 -31.30743 -30.90436 -29.18961 -27.61444 -25.30916 -25.17743 -24.33351 -23.36374 -21.82908 -21.33168 -21.20292 -20.57626 -20.27070 -18.94118 -17.72460 -17.40972 -17.24612 -16.92268 -16.72787 -16.55528 -16.32860 -15.79301 -15.61001 -15.26255 -15.22100 -14.99648 -14.81283 -14.65439 -14.54822 -14.36545 -14.14292 -13.97628 -13.52897 -13.06862 -12.98001 -12.92977 -12.61740 -12.40608 -12.33371 -12.22440 -12.01686 -11.93202 -11.65700 -11.48868 -11.34548 -11.02123 -10.77641 -10.45088 -10.22084 -10.11772 -9.71511 -9.58956 -8.39431 -5.99839 0.56514 1.30578 1.36626 1.42605 1.44885 1.69453 1.97785 2.24278 2.25836 2.54880 2.68516 3.15594 3.24394 3.44302 3.54042 3.74827 3.80422 3.87948 3.99012 4.09663 4.11559 4.17920 4.24141 4.32115 4.37489 4.40894 4.41613 4.45438 4.64568 4.71105 4.83885 4.84674 4.88753 5.02382 5.11455 5.22538 5.23345 5.33673 5.44492 5.52554 5.55821 5.93875 6.08190 6.09364 6.46413 6.62009 6.85807 6.90770 7.22167 7.41900 8.00577 8.78619 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007403 B = 0.004110 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.102247 B = 6810.266341 C = 9958.413255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.448 5.448 4 C 0.190 3.810 5 N -0.502 5.502 6 C -0.105 4.105 7 C 0.597 3.403 8 O -0.582 6.582 9 N -0.708 5.708 10 C 0.138 3.862 11 C 0.015 3.985 12 H 0.112 0.888 13 C -0.111 4.111 14 C -0.004 4.004 15 N -0.476 5.476 16 C 0.019 3.981 17 C 0.455 3.545 18 O -0.609 6.609 19 N -0.591 5.591 20 C -0.327 4.327 21 H 0.051 0.949 22 C -0.013 4.013 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.233 1.233 28 C 0.045 3.955 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.240 0.760 35 H 0.406 0.594 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 -3.648 -14.367 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.128 5.128 4 C -0.095 4.095 5 N -0.221 5.221 6 C -0.233 4.233 7 C 0.384 3.616 8 O -0.463 6.463 9 N -0.357 5.357 10 C 0.015 3.985 11 C -0.094 4.094 12 H 0.130 0.870 13 C -0.149 4.149 14 C -0.133 4.133 15 N -0.199 5.199 16 C -0.113 4.113 17 C 0.243 3.757 18 O -0.493 6.493 19 N -0.233 5.233 20 C -0.456 4.456 21 H 0.069 0.931 22 C -0.212 4.212 23 N -0.577 5.577 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.156 1.156 28 C -0.096 4.096 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.256 0.744 35 H 0.242 0.758 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.599 -4.063 -14.840 24.917 hybrid contribution -0.686 -0.077 1.219 1.401 sum -20.285 -4.140 -13.621 24.782 Atomic orbital electron populations 1.22150 0.93015 1.04518 1.02625 1.22364 0.96375 0.77082 1.07092 1.45820 1.47200 1.14235 1.05581 1.25788 1.01811 0.86727 0.95159 1.70577 1.19046 1.21907 1.10530 1.20617 1.15105 0.96636 0.90993 1.17210 0.76166 0.81962 0.86212 1.90718 1.57706 1.83564 1.14344 1.45801 1.65366 1.13297 1.11277 1.21464 0.99807 0.84311 0.92933 1.23868 0.95971 0.95268 0.94298 0.87001 1.23092 0.96155 1.00134 0.95509 1.23883 1.01219 0.90165 0.98030 1.68807 1.18359 1.29822 1.02918 1.22505 0.95718 1.02234 0.90843 1.20785 0.89564 0.82840 0.82524 1.90544 1.27004 1.55565 1.76196 1.42011 1.15024 1.58087 1.08225 1.18978 0.96293 1.39246 0.91070 0.93067 1.26085 1.03449 0.96425 0.95210 1.69811 1.37028 1.44650 1.06162 0.85374 0.77180 0.80329 0.78701 1.17967 1.19892 1.15647 1.22801 1.01368 0.91054 0.94425 0.88169 0.92237 0.92711 0.87056 0.86295 0.74432 0.75795 0.92485 0.89403 0.89078 0.86618 0.89335 0.91866 0.88419 0.87905 0.77641 0.91172 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 71.98 0.74 -0.26 16 2 C 0.09 0.67 6.84 86.38 0.59 1.26 16 3 N -0.45 -7.74 2.73 -528.40 -1.44 -9.18 16 4 C 0.19 4.16 12.55 180.10 2.26 6.42 16 5 N -0.50 -15.40 11.01 -188.81 -2.08 -17.48 16 6 C -0.11 -3.22 6.98 40.50 0.28 -2.94 16 7 C 0.60 20.03 7.81 86.63 0.68 20.71 16 8 O -0.58 -21.36 16.88 -4.10 -0.07 -21.43 16 9 N -0.71 -21.77 5.46 -466.46 -2.55 -24.31 16 10 C 0.14 3.53 5.82 86.38 0.50 4.03 16 11 C 0.02 0.33 3.23 42.19 0.14 0.47 16 12 H 0.11 1.85 7.91 -2.39 -0.02 1.83 16 13 C -0.11 -2.06 8.00 30.94 0.25 -1.81 16 14 C 0.00 -0.11 7.71 83.58 0.64 0.53 16 15 N -0.48 -15.06 5.39 -906.65 -4.88 -19.94 16 16 C 0.02 0.62 5.05 85.56 0.43 1.05 16 17 C 0.46 21.89 7.85 87.66 0.69 22.58 16 18 O -0.61 -36.23 16.01 -3.09 -0.05 -36.28 16 19 N -0.59 -29.15 5.09 -306.99 -1.56 -30.72 16 20 C -0.33 -19.78 10.16 84.04 0.85 -18.92 16 21 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.94 -57.30 13.96 21.67 0.30 -57.00 16 24 Si 0.96 39.47 27.74 68.60 1.90 41.37 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 28 C 0.04 1.02 11.26 83.72 0.94 1.96 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.24 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.41 12.94 5.93 -92.71 -0.55 12.39 16 36 H 0.06 1.65 7.87 -2.39 -0.02 1.63 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.91 7.42 -2.39 -0.02 1.89 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 2.51 7.30 -2.39 -0.02 2.49 16 43 H 0.10 3.01 6.27 -2.38 -0.01 3.00 16 44 H 0.39 15.91 5.76 -92.71 -0.53 15.37 16 45 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 46 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -92.89 387.33 -1.09 -93.97 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -0.12 Total: 46.20 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 9.46 Total: 34.79 kcal Atomic # 7 Polarization: -146.42 SS G_CDS: -12.21 Total: -158.63 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.12 Total: -57.71 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.90 Total: 41.37 kcal Total: -92.89 -1.09 -93.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699639499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.992 kcal (2) G-P(sol) polarization free energy of solvation -92.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds