Wall clock time and date at job start Tue Mar 31 2020 18:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47513 * 2 1 4 4 C 1.34256 * 125.75651 * 125.00005 * 3 2 1 5 5 C 1.38048 * 107.41655 * 179.97438 * 4 3 2 6 6 C 1.47430 * 126.41060 * 179.97438 * 5 4 3 7 7 O 1.21596 * 120.00506 * 354.93747 * 6 5 4 8 8 N 1.34780 * 119.99738 * 174.94208 * 6 5 4 9 9 C 1.46498 * 120.00327 * 184.96940 * 8 6 5 10 10 C 1.52993 * 109.47500 * 184.98759 * 9 8 6 11 11 N 1.46901 * 115.55112 * 276.39017 * 10 9 8 12 12 C 1.46901 * 110.99686 * 294.57933 * 11 10 9 13 13 C 1.50705 * 109.47157 * 185.48737 * 12 11 10 14 14 O 1.21295 * 119.99857 * 4.97465 * 13 12 11 15 15 N 1.34770 * 119.99958 * 184.97157 * 13 12 11 16 16 C 1.37103 * 119.99870 * 184.93239 * 15 13 12 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99958 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99854 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00131 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47063 * 90.00147 * 20 18 16 22 22 H 1.48498 * 109.47506 * 210.00110 * 20 18 16 23 23 H 1.48498 * 109.47371 * 330.00580 * 20 18 16 24 24 C 1.52998 * 117.49909 * 130.71817 * 10 9 8 25 25 C 1.53004 * 117.50006 * 62.05665 * 10 9 8 26 26 C 1.41289 * 107.17091 * 359.97438 * 5 4 3 27 27 N 1.30440 * 108.02133 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.47027 * 300.00200 * 1 2 3 29 29 H 1.08999 * 109.47060 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46916 * 239.99597 * 2 1 3 32 32 H 1.08999 * 109.47060 * 120.00107 * 2 1 3 33 33 H 1.08000 * 126.29394 * 359.97438 * 4 3 2 34 34 H 0.97004 * 120.00061 * 4.96615 * 8 6 5 35 35 H 1.09006 * 109.46898 * 304.99311 * 9 8 6 36 36 H 1.09001 * 109.46972 * 64.98255 * 9 8 6 37 37 H 1.00899 * 111.00235 * 170.63357 * 11 10 9 38 38 H 1.08996 * 109.47397 * 305.48823 * 12 11 10 39 39 H 1.09006 * 109.47300 * 65.48932 * 12 11 10 40 40 H 0.97004 * 120.00441 * 4.93812 * 15 13 12 41 41 H 0.97005 * 119.99902 * 179.97438 * 19 18 16 42 42 H 1.08993 * 117.49937 * 0.02562 * 24 10 9 43 43 H 1.09002 * 117.50189 * 145.02431 * 24 10 9 44 44 H 1.08999 * 117.50064 * 214.98356 * 25 10 9 45 45 H 1.09001 * 117.49279 * 359.97438 * 25 10 9 46 46 H 1.07996 * 125.98899 * 179.73727 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8691 1.9124 0.8925 5 6 3.0715 3.2307 0.5363 6 6 3.9328 4.2032 1.2335 7 8 4.4770 3.8953 2.2763 8 7 4.1168 5.4335 0.7149 9 6 5.0568 6.3621 1.3477 10 6 4.9858 7.7185 0.6434 11 7 5.7962 7.8427 -0.5755 12 6 7.2295 7.7538 -0.2661 13 6 8.0304 8.0191 -1.5148 14 8 7.4676 8.3470 -2.5380 15 7 9.3720 7.8920 -1.4946 16 6 10.1093 8.2304 -2.5998 17 1 9.6152 8.5991 -3.4864 18 6 11.4925 8.0989 -2.5791 19 7 12.1993 8.4237 -3.6383 20 14 12.3473 7.4618 -1.0453 21 1 12.4564 5.9825 -1.1177 22 1 13.7058 8.0544 -0.9534 23 1 11.5593 7.8417 0.1546 24 6 4.8340 8.9628 1.5206 25 6 3.6519 8.4667 0.6841 26 6 2.2988 3.4734 -0.6214 27 7 1.6776 2.3689 -0.9308 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3134 1.4022 1.7343 34 1 3.6269 5.7042 -0.0774 35 1 4.7949 6.4842 2.3987 36 1 6.0686 5.9644 1.2693 37 1 5.5844 8.6993 -1.0648 38 1 7.4839 8.4938 0.4928 39 1 7.4594 6.7561 0.1079 40 1 9.8159 7.5611 -0.6981 41 1 13.1649 8.3322 -3.6238 42 1 4.7851 8.8152 2.5994 43 1 5.3350 9.8737 1.1931 44 1 3.3758 9.0514 -0.1934 45 1 2.8247 7.9924 1.2123 46 1 2.2304 4.4105 -1.1538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699646196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:26 Heat of formation + Delta-G solvation = 38.484400 kcal Electronic energy + Delta-G solvation = -27859.785377 eV Core-core repulsion = 23787.293203 eV Total energy + Delta-G solvation = -4072.492174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63579 -39.67610 -38.68396 -37.84887 -34.93605 -34.22941 -33.98472 -32.68183 -31.64126 -30.86231 -30.16541 -27.24892 -26.70270 -24.32004 -23.89815 -23.00519 -22.41409 -20.99745 -20.13948 -19.71258 -19.39511 -18.36312 -18.08207 -16.62533 -16.32666 -16.02609 -15.94945 -15.42096 -15.33314 -14.94016 -14.83891 -14.55665 -14.30133 -14.13463 -13.85155 -13.70355 -13.11864 -13.04617 -12.97852 -12.70885 -12.62196 -12.58768 -12.28058 -12.18039 -11.96946 -11.69926 -11.67156 -11.26517 -11.19764 -10.87570 -10.58792 -10.35562 -9.98119 -9.90333 -9.89668 -9.58174 -9.17478 -8.83634 -8.57885 -8.21469 -8.16232 -6.31763 -3.83225 1.29908 1.96400 1.98760 3.03563 3.04916 3.08602 3.16180 3.39712 3.63715 3.71765 4.00233 4.07419 4.10931 4.39796 4.43960 4.45110 4.55571 4.63545 4.68524 4.79796 4.82089 4.91916 5.03807 5.13042 5.21858 5.29162 5.39584 5.46467 5.53678 5.57996 5.59949 5.66581 5.73486 5.74985 5.84822 5.93168 5.95881 6.13813 6.41369 6.49924 7.02639 7.24392 7.47906 7.56359 7.57298 8.13047 8.24652 8.58137 8.93565 9.41391 9.79933 10.81142 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.002312 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.464439 B =12105.999718 C =13129.950590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.362 5.362 4 C 0.126 3.874 5 C -0.292 4.292 6 C 0.595 3.405 7 O -0.557 6.557 8 N -0.714 5.714 9 C 0.170 3.830 10 C 0.036 3.964 11 N -0.629 5.629 12 C 0.047 3.953 13 C 0.450 3.550 14 O -0.569 6.569 15 N -0.588 5.588 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.206 4.206 25 C -0.164 4.164 26 C 0.084 3.916 27 N -0.295 5.295 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.187 0.813 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.358 0.642 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.313 -12.534 13.795 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.025 4.025 5 C -0.307 4.307 6 C 0.383 3.617 7 O -0.437 6.437 8 N -0.365 5.365 9 C 0.046 3.954 10 C -0.058 4.058 11 N -0.260 5.260 12 C -0.086 4.086 13 C 0.236 3.764 14 O -0.451 6.451 15 N -0.227 5.227 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.706 3.294 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.246 4.246 25 C -0.202 4.202 26 C -0.104 4.104 27 N -0.115 5.115 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.204 0.796 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.179 0.821 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.204 0.796 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.963 -13.885 12.695 29.685 hybrid contribution 1.481 0.953 1.661 2.421 sum -21.482 -12.932 14.356 28.892 Atomic orbital electron populations 1.22057 0.93386 1.03126 1.03784 1.21833 0.96432 0.76903 1.04352 1.48651 1.34354 1.10643 1.20476 1.22975 0.91575 0.93642 0.94336 1.20246 1.11667 0.95478 1.03299 1.17206 0.79816 0.81031 0.83652 1.90761 1.50972 1.78553 1.23375 1.45623 1.44901 1.13804 1.32139 1.20682 0.93868 0.85621 0.95251 1.21878 0.98658 0.92011 0.93225 1.59944 1.03295 1.44589 1.18219 1.21725 0.88186 1.02054 0.96594 1.19668 0.82570 0.84446 0.89741 1.90561 1.69800 1.51640 1.33111 1.42183 1.05805 1.59535 1.15188 1.19426 0.89101 1.40976 0.93890 0.86282 1.25047 0.96128 0.97613 0.97369 1.69624 1.07006 1.47136 1.28242 0.86672 0.80185 0.79890 0.82675 1.19548 1.20163 1.19432 1.23654 1.03138 0.99083 0.98768 1.23155 0.91496 1.02913 1.02611 1.24115 0.93974 0.97546 0.94771 1.77152 1.24005 0.97072 1.13241 0.91974 0.90873 0.90449 0.89197 0.88231 0.79623 0.76059 0.90683 0.90757 0.82075 0.93058 0.89457 0.79596 0.91591 0.88397 0.88384 0.88087 0.88067 0.79242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.09 37.15 0.37 -0.36 16 2 C 0.13 0.61 7.21 -4.05 -0.03 0.58 16 3 N -0.36 -3.13 3.65 -60.81 -0.22 -3.36 16 4 C 0.13 1.17 11.25 -16.56 -0.19 0.98 16 5 C -0.29 -3.17 6.12 -105.07 -0.64 -3.82 16 6 C 0.60 7.53 7.81 -12.52 -0.10 7.43 16 7 O -0.56 -8.78 16.88 5.28 0.09 -8.69 16 8 N -0.71 -7.87 5.46 -61.39 -0.34 -8.21 16 9 C 0.17 1.95 5.74 -4.05 -0.02 1.93 16 10 C 0.04 0.39 1.81 -131.60 -0.24 0.15 16 11 N -0.63 -9.16 6.43 -101.22 -0.65 -9.81 16 12 C 0.05 0.76 5.94 -4.97 -0.03 0.73 16 13 C 0.45 10.10 7.81 -10.99 -0.09 10.02 16 14 O -0.57 -14.99 15.62 5.54 0.09 -14.90 16 15 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 16 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 17 H 0.12 3.84 7.40 -52.49 -0.39 3.46 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 20 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 24 C -0.21 -1.98 10.01 -26.69 -0.27 -2.25 16 25 C -0.16 -1.47 9.87 -26.69 -0.26 -1.74 16 26 C 0.08 0.83 11.51 -16.98 -0.20 0.63 16 27 N -0.30 -3.14 12.33 30.86 0.38 -2.76 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.23 8.06 -51.93 -0.42 -0.19 16 33 H 0.19 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.40 3.84 7.41 -40.82 -0.30 3.54 16 35 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.07 0.97 6.60 -51.93 -0.34 0.63 16 37 H 0.36 5.51 8.02 -39.29 -0.31 5.20 16 38 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 39 H 0.09 1.33 6.83 -51.93 -0.35 0.97 16 40 H 0.37 7.83 5.77 -40.82 -0.24 7.59 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.10 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.19 1.37 7.52 -52.49 -0.39 0.97 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -36.28 393.68 -7.20 -43.48 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -6.55 Total: 16.01 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.93 Total: 6.55 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.11 Total: -63.19 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.28 -7.20 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699646196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.963 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds