Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47513 * 2 1 4 4 C 1.34256 * 125.75651 * 125.00005 * 3 2 1 5 5 C 1.38048 * 107.41655 * 179.97438 * 4 3 2 6 6 C 1.47430 * 126.41060 * 179.97438 * 5 4 3 7 7 O 1.21596 * 120.00506 * 354.93747 * 6 5 4 8 8 N 1.34780 * 119.99738 * 174.94208 * 6 5 4 9 9 C 1.46498 * 120.00327 * 184.96940 * 8 6 5 10 10 C 1.52993 * 109.47500 * 184.98759 * 9 8 6 11 11 N 1.46901 * 115.55112 * 276.39017 * 10 9 8 12 12 C 1.46901 * 110.99686 * 294.57933 * 11 10 9 13 13 C 1.50705 * 109.47157 * 185.48737 * 12 11 10 14 14 O 1.21295 * 119.99857 * 4.97465 * 13 12 11 15 15 N 1.34770 * 119.99958 * 184.97157 * 13 12 11 16 16 C 1.37103 * 119.99870 * 184.93239 * 15 13 12 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99958 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99854 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00131 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47063 * 90.00147 * 20 18 16 22 22 H 1.48498 * 109.47506 * 210.00110 * 20 18 16 23 23 H 1.48498 * 109.47371 * 330.00580 * 20 18 16 24 24 C 1.52998 * 117.49909 * 130.71817 * 10 9 8 25 25 C 1.53004 * 117.50006 * 62.05665 * 10 9 8 26 26 C 1.41289 * 107.17091 * 359.97438 * 5 4 3 27 27 N 1.30440 * 108.02133 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.47027 * 300.00200 * 1 2 3 29 29 H 1.08999 * 109.47060 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46916 * 239.99597 * 2 1 3 32 32 H 1.08999 * 109.47060 * 120.00107 * 2 1 3 33 33 H 1.08000 * 126.29394 * 359.97438 * 4 3 2 34 34 H 0.97004 * 120.00061 * 4.96615 * 8 6 5 35 35 H 1.09006 * 109.46898 * 304.99311 * 9 8 6 36 36 H 1.09001 * 109.46972 * 64.98255 * 9 8 6 37 37 H 1.00899 * 111.00235 * 170.63357 * 11 10 9 38 38 H 1.08996 * 109.47397 * 305.48823 * 12 11 10 39 39 H 1.09006 * 109.47300 * 65.48932 * 12 11 10 40 40 H 0.97004 * 120.00441 * 4.93812 * 15 13 12 41 41 H 0.97005 * 119.99902 * 179.97438 * 19 18 16 42 42 H 1.08993 * 117.49937 * 0.02562 * 24 10 9 43 43 H 1.09002 * 117.50189 * 145.02431 * 24 10 9 44 44 H 1.08999 * 117.50064 * 214.98356 * 25 10 9 45 45 H 1.09001 * 117.49279 * 359.97438 * 25 10 9 46 46 H 1.07996 * 125.98899 * 179.73727 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8691 1.9124 0.8925 5 6 3.0715 3.2307 0.5363 6 6 3.9328 4.2032 1.2335 7 8 4.4770 3.8953 2.2763 8 7 4.1168 5.4335 0.7149 9 6 5.0568 6.3621 1.3477 10 6 4.9858 7.7185 0.6434 11 7 5.7962 7.8427 -0.5755 12 6 7.2295 7.7538 -0.2661 13 6 8.0304 8.0191 -1.5148 14 8 7.4676 8.3470 -2.5380 15 7 9.3720 7.8920 -1.4946 16 6 10.1093 8.2304 -2.5998 17 1 9.6152 8.5991 -3.4864 18 6 11.4925 8.0989 -2.5791 19 7 12.1993 8.4237 -3.6383 20 14 12.3473 7.4618 -1.0453 21 1 12.4564 5.9825 -1.1177 22 1 13.7058 8.0544 -0.9534 23 1 11.5593 7.8417 0.1546 24 6 4.8340 8.9628 1.5206 25 6 3.6519 8.4667 0.6841 26 6 2.2988 3.4734 -0.6214 27 7 1.6776 2.3689 -0.9308 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3134 1.4022 1.7343 34 1 3.6269 5.7042 -0.0774 35 1 4.7949 6.4842 2.3987 36 1 6.0686 5.9644 1.2693 37 1 5.5844 8.6993 -1.0648 38 1 7.4839 8.4938 0.4928 39 1 7.4594 6.7561 0.1079 40 1 9.8159 7.5611 -0.6981 41 1 13.1649 8.3322 -3.6238 42 1 4.7851 8.8152 2.5994 43 1 5.3350 9.8737 1.1931 44 1 3.3758 9.0514 -0.1934 45 1 2.8247 7.9924 1.2123 46 1 2.2304 4.4105 -1.1538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699646196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = 8.822421 kcal Electronic energy + Delta-G solvation = -27861.071617 eV Core-core repulsion = 23787.293203 eV Total energy + Delta-G solvation = -4073.778414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34507 -40.73201 -40.13122 -39.06520 -36.07981 -35.50641 -35.02200 -33.97634 -33.63913 -31.55191 -30.81656 -28.44123 -27.97241 -25.66650 -24.82593 -23.79600 -23.18518 -21.64679 -21.31812 -20.98861 -20.58298 -20.27951 -18.83783 -17.95621 -17.22163 -16.97128 -16.89043 -16.66590 -16.48788 -16.34793 -15.70472 -15.69187 -15.36865 -15.23941 -14.82090 -14.72084 -14.52759 -14.21037 -14.13660 -13.82032 -13.79337 -13.51302 -13.31190 -12.98136 -12.96839 -12.87527 -12.46127 -12.42550 -12.37510 -11.98328 -11.95381 -11.76749 -11.52786 -11.20628 -10.86703 -10.57913 -10.44327 -10.25955 -10.08820 -9.59537 -9.27163 -8.42427 -6.03045 0.56800 1.18946 1.29824 1.34862 1.41991 1.43354 1.91952 2.21041 2.22032 2.52093 2.58991 3.00532 3.13387 3.33440 3.49152 3.63640 3.79151 3.81751 4.00757 4.03528 4.08247 4.13199 4.16700 4.35901 4.43759 4.45254 4.50368 4.62742 4.65756 4.78363 4.79883 4.81190 4.87774 4.89713 5.02983 5.21641 5.24716 5.43502 5.51153 5.53650 5.88290 5.90930 6.00485 6.33011 6.52377 6.57442 6.70471 6.86138 7.33824 7.37635 7.92306 8.74901 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.002312 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.464439 B =12105.999718 C =13129.950590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.358 5.358 4 C 0.131 3.869 5 C -0.317 4.317 6 C 0.595 3.405 7 O -0.594 6.594 8 N -0.707 5.707 9 C 0.173 3.827 10 C 0.024 3.976 11 N -0.641 5.641 12 C 0.062 3.938 13 C 0.450 3.550 14 O -0.613 6.613 15 N -0.590 5.590 16 C -0.327 4.327 17 H 0.057 0.943 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.231 1.231 24 C -0.197 4.197 25 C -0.148 4.148 26 C 0.083 3.917 27 N -0.322 5.322 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.208 0.792 34 H 0.412 0.588 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.352 0.648 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.119 -13.910 17.078 31.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.022 4.022 5 C -0.332 4.332 6 C 0.384 3.616 7 O -0.476 6.476 8 N -0.357 5.357 9 C 0.048 3.952 10 C -0.068 4.068 11 N -0.272 5.272 12 C -0.070 4.070 13 C 0.238 3.762 14 O -0.498 6.498 15 N -0.232 5.232 16 C -0.457 4.457 17 H 0.076 0.924 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.782 3.218 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.154 1.154 24 C -0.237 4.237 25 C -0.186 4.186 26 C -0.104 4.104 27 N -0.142 5.142 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.224 0.776 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.172 0.828 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.135 0.865 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.821 -15.261 15.972 32.488 hybrid contribution 1.590 1.371 0.529 2.165 sum -22.232 -13.889 16.501 30.975 Atomic orbital electron populations 1.22015 0.93116 1.04254 1.02395 1.22240 0.96694 0.75292 1.06215 1.48985 1.33674 1.11442 1.19596 1.23351 0.90966 0.93374 0.94541 1.20265 1.12690 0.96048 1.04173 1.17439 0.79506 0.81449 0.83217 1.90731 1.52648 1.79259 1.24965 1.45593 1.44536 1.13422 1.32135 1.20640 0.93155 0.85647 0.95720 1.21788 0.99887 0.92504 0.92644 1.59917 1.02528 1.44457 1.20339 1.21600 0.88414 1.03735 0.93207 1.20878 0.82326 0.81811 0.91158 1.90540 1.70695 1.52897 1.35650 1.42026 1.06261 1.60280 1.14590 1.19008 0.90057 1.42680 0.93925 0.92444 1.26092 0.96335 0.97132 1.01756 1.69799 1.07702 1.48441 1.31333 0.85408 0.78765 0.79328 0.78337 1.18488 1.19810 1.15397 1.23692 1.02874 0.97639 0.99479 1.23236 0.91099 1.01697 1.02532 1.24419 0.93345 0.98141 0.94501 1.77108 1.24894 0.97797 1.14451 0.92640 0.92881 0.88061 0.88551 0.85177 0.77579 0.75219 0.89929 0.92271 0.82786 0.90388 0.87661 0.77546 0.91124 0.86856 0.88753 0.87933 0.86461 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.09 71.98 0.73 -0.46 16 2 C 0.11 0.89 7.21 86.38 0.62 1.51 16 3 N -0.36 -5.71 3.65 -346.32 -1.26 -6.97 16 4 C 0.13 2.23 11.25 84.28 0.95 3.18 16 5 C -0.32 -6.58 6.12 -20.15 -0.12 -6.71 16 6 C 0.59 14.46 7.81 86.66 0.68 15.13 16 7 O -0.59 -18.19 16.88 -4.02 -0.07 -18.25 16 8 N -0.71 -14.57 5.46 -466.38 -2.55 -17.11 16 9 C 0.17 3.62 5.74 86.38 0.50 4.12 16 10 C 0.02 0.48 1.81 3.53 0.01 0.49 16 11 N -0.64 -17.79 6.43 -474.14 -3.05 -20.84 16 12 C 0.06 1.92 5.94 85.56 0.51 2.42 16 13 C 0.45 20.25 7.81 87.66 0.68 20.94 16 14 O -0.61 -33.42 15.62 -3.08 -0.05 -33.47 16 15 N -0.59 -28.05 5.09 -306.98 -1.56 -29.61 16 16 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 17 H 0.06 4.00 7.40 -2.91 -0.02 3.98 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 19 N -0.93 -56.41 13.96 21.66 0.30 -56.10 16 20 Si 0.96 39.32 27.74 68.60 1.90 41.23 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 24 C -0.20 -3.20 10.01 30.62 0.31 -2.89 16 25 C -0.15 -2.26 9.87 30.62 0.30 -1.96 16 26 C 0.08 1.58 11.51 85.65 0.99 2.57 16 27 N -0.32 -6.62 12.33 -56.28 -0.69 -7.32 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.13 0.21 8.06 -2.39 -0.02 0.19 16 33 H 0.21 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.41 7.22 7.41 -92.70 -0.69 6.53 16 35 H 0.08 1.63 7.87 -2.38 -0.02 1.62 16 36 H 0.06 1.43 6.60 -2.39 -0.02 1.42 16 37 H 0.35 10.58 8.02 -89.70 -0.72 9.86 16 38 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 39 H 0.11 2.93 6.83 -2.38 -0.02 2.91 16 40 H 0.39 15.51 5.77 -92.71 -0.53 14.97 16 41 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 42 H 0.11 1.53 8.06 -2.39 -0.02 1.51 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.21 2.80 7.52 -2.91 -0.02 2.77 16 Total: -1.00 -84.01 393.68 -0.53 -84.54 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: -0.96 Total: 44.32 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 7.46 Total: 19.60 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -8.81 Total: -137.96 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -0.12 Total: -51.72 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.23 kcal Total: -84.01 -0.53 -84.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699646196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.363 kcal (2) G-P(sol) polarization free energy of solvation -84.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds