Wall clock time and date at job start Tue Mar 31 2020 19:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47496 * 2 1 4 4 C 1.35406 * 126.43775 * 265.14825 * 3 2 1 5 5 C 1.35567 * 107.15962 * 180.23811 * 4 3 2 6 6 N 1.33103 * 108.34886 * 359.76970 * 5 4 3 7 7 C 1.31618 * 109.09495 * 359.97438 * 6 5 4 8 8 C 1.47407 * 125.86361 * 179.97438 * 7 6 5 9 9 O 1.21600 * 120.00109 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99988 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00000 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46948 * 175.57450 * 11 10 8 13 13 N 1.46895 * 115.54923 * 279.61218 * 12 11 10 14 14 C 1.46893 * 111.00492 * 294.62910 * 13 12 11 15 15 C 1.50696 * 109.47424 * 179.58952 * 14 13 12 16 16 O 1.21288 * 120.00138 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00251 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00459 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99988 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00268 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99905 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99937 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47432 * 89.99943 * 22 20 18 24 24 H 1.48502 * 109.46967 * 209.99893 * 22 20 18 25 25 H 1.48503 * 109.47004 * 329.99647 * 22 20 18 26 26 C 1.52993 * 117.49542 * 133.94643 * 12 11 10 27 27 C 1.52996 * 117.49657 * 65.28777 * 12 11 10 28 28 H 1.08994 * 109.47166 * 59.99673 * 1 2 3 29 29 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46552 * 299.99946 * 1 2 3 31 31 H 1.09007 * 109.47105 * 239.99867 * 2 1 3 32 32 H 1.09003 * 109.47315 * 120.00573 * 2 1 3 33 33 H 1.07997 * 126.42031 * 359.96801 * 4 3 2 34 34 H 1.08000 * 125.82359 * 179.75194 * 5 4 3 35 35 H 0.97005 * 120.00092 * 0.27845 * 10 8 7 36 36 H 1.09005 * 109.46974 * 295.57393 * 11 10 8 37 37 H 1.08993 * 109.46942 * 55.57711 * 11 10 8 38 38 H 1.00903 * 110.99820 * 170.67214 * 13 12 11 39 39 H 1.09003 * 109.46999 * 299.59512 * 14 13 12 40 40 H 1.09007 * 109.46928 * 59.59046 * 14 13 12 41 41 H 0.97007 * 119.99967 * 0.02562 * 17 15 14 42 42 H 0.97006 * 119.99634 * 179.97438 * 21 20 18 43 43 H 1.09003 * 117.50382 * 359.97438 * 26 12 11 44 44 H 1.09000 * 117.49932 * 145.01957 * 26 12 11 45 45 H 1.09008 * 117.49543 * 214.97577 * 27 12 11 46 46 H 1.08998 * 117.50454 * 359.97052 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1087 -1.0854 5 6 2.7694 3.3260 -0.6390 6 7 2.6543 3.3438 0.6869 7 6 2.1982 2.1786 1.0952 8 6 1.9334 1.7970 2.4942 9 8 1.5110 0.6862 2.7518 10 7 2.1595 2.6792 3.4877 11 6 1.8969 2.2996 4.8781 12 6 2.3373 3.4323 5.8078 13 7 3.7761 3.4904 6.0980 14 6 4.2082 2.3094 6.8572 15 6 5.6881 2.3994 7.1270 16 8 6.3206 3.3537 6.7266 17 7 6.3087 1.4200 7.8140 18 6 7.6549 1.5020 8.0599 19 1 8.2183 2.3514 7.7026 20 6 8.2948 0.4920 8.7678 21 7 9.5853 0.5705 9.0029 22 14 7.3208 -0.9781 9.3838 23 1 7.3233 -2.0427 8.3485 24 1 7.9422 -1.4970 10.6288 25 1 5.9227 -0.5633 9.6641 26 6 1.3745 3.8459 6.9225 27 6 1.5817 4.7592 5.7117 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3500 1.7793 -2.1137 34 1 3.1189 4.1419 -1.2543 35 1 2.4926 3.5666 3.2818 36 1 0.8305 2.1157 5.0093 37 1 2.4541 1.3944 5.1190 38 1 4.0123 4.3409 6.5869 39 1 3.6683 2.2681 7.8032 40 1 3.9983 1.4092 6.2795 41 1 5.8028 0.6569 8.1346 42 1 10.0319 -0.1345 9.4975 43 1 0.4271 3.3115 6.9934 44 1 1.8087 4.1616 7.8711 45 1 2.1523 5.6754 5.8643 46 1 0.7713 4.8255 4.9859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699649945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:02 Heat of formation + Delta-G solvation = 28.069263 kcal Electronic energy + Delta-G solvation = -28498.243049 eV Core-core repulsion = 24425.299241 eV Total energy + Delta-G solvation = -4072.943808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.50049 -39.79532 -38.75723 -37.88599 -35.49445 -34.21907 -33.98816 -32.70727 -31.62196 -30.75637 -30.04479 -27.35173 -26.72169 -24.37997 -23.89449 -23.09313 -22.47552 -21.58268 -20.24618 -19.62530 -19.37128 -18.34576 -17.99569 -16.64678 -16.49845 -16.16593 -15.98860 -15.48397 -15.26831 -14.89323 -14.83922 -14.62748 -14.18325 -14.08197 -13.98651 -13.86046 -13.65170 -13.06992 -13.02669 -12.77130 -12.62084 -12.43139 -12.35959 -12.15532 -11.73975 -11.70126 -11.68511 -11.20938 -10.94302 -10.58363 -10.50807 -10.36670 -10.21899 -10.05032 -9.96343 -9.56437 -9.26020 -8.74143 -8.56015 -8.19020 -8.13773 -6.30200 -3.81562 1.17682 2.17297 2.41490 3.00755 3.03511 3.08485 3.16104 3.28786 3.59156 3.73866 4.00357 4.11416 4.18707 4.32187 4.40483 4.49658 4.59347 4.62986 4.79117 4.83685 4.90421 5.02669 5.14427 5.22535 5.27864 5.37651 5.39635 5.45995 5.49992 5.58427 5.68889 5.70707 5.72436 5.81485 5.92559 5.94522 5.96171 6.23490 6.37420 6.66521 7.01916 7.26641 7.48109 7.58710 7.66835 8.00512 8.15211 8.60354 8.95760 9.43218 9.83083 10.82904 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.002663 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.857692 B =10513.819323 C =11362.672314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.414 5.414 4 C -0.031 4.031 5 C -0.027 4.027 6 N -0.442 5.442 7 C 0.142 3.858 8 C 0.607 3.393 9 O -0.546 6.546 10 N -0.689 5.689 11 C 0.169 3.831 12 C 0.035 3.965 13 N -0.625 5.625 14 C 0.047 3.953 15 C 0.450 3.550 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.205 4.205 27 C -0.163 4.163 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.357 0.643 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.371 0.629 42 H 0.273 0.727 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.042 0.658 -16.360 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.170 4.170 5 C -0.181 4.181 6 N -0.164 5.164 7 C -0.118 4.118 8 C 0.391 3.609 9 O -0.423 6.423 10 N -0.340 5.340 11 C 0.045 3.955 12 C -0.058 4.058 13 N -0.257 5.257 14 C -0.085 4.085 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.246 4.246 27 C -0.201 4.201 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.199 0.801 34 H 0.195 0.805 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.178 0.822 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.357 0.610 -16.343 27.700 hybrid contribution -0.865 -1.294 0.682 1.699 sum -23.221 -0.684 -15.660 28.017 Atomic orbital electron populations 1.22057 0.93572 1.03397 1.02920 1.22135 0.96278 0.78816 1.05477 1.45271 1.45228 1.12813 1.06120 1.22922 1.06939 0.94052 0.93065 1.22443 1.07008 0.97628 0.90991 1.70228 1.14722 1.18767 1.12640 1.22607 1.10296 0.88627 0.90227 1.16416 0.78041 0.84393 0.82080 1.90792 1.47139 1.20687 1.83702 1.45514 1.65473 1.17614 1.05433 1.20785 1.00150 0.96164 0.78407 1.21827 0.87253 0.96908 0.99833 1.59824 1.09629 1.05284 1.50920 1.21724 0.95214 0.94837 0.96751 1.19656 0.88240 0.84985 0.83534 1.90572 1.66670 1.33264 1.54078 1.42194 1.09678 1.20557 1.50500 1.19431 0.81790 1.08922 1.33185 0.86268 1.25038 0.95660 0.98001 0.97451 1.69625 1.08272 1.34127 1.40103 0.86676 0.79863 0.83321 0.79565 1.19577 1.20183 1.19484 1.23657 1.02064 1.04603 0.94227 1.23170 1.02268 0.93950 1.00691 0.92332 0.90334 0.91359 0.88974 0.87116 0.80113 0.80511 0.74531 0.90688 0.90057 0.82238 0.93296 0.89377 0.79680 0.91618 0.88382 0.88308 0.87935 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.23 37.16 0.38 -0.76 16 2 C 0.09 0.76 6.17 -4.04 -0.02 0.73 16 3 N -0.41 -4.26 2.76 -114.58 -0.32 -4.57 16 4 C -0.03 -0.26 11.53 -16.93 -0.20 -0.46 16 5 C -0.03 -0.27 11.85 -17.96 -0.21 -0.49 16 6 N -0.44 -5.75 10.89 -11.26 -0.12 -5.87 16 7 C 0.14 1.83 7.78 -154.52 -1.20 0.62 16 8 C 0.61 8.24 7.81 -12.53 -0.10 8.14 16 9 O -0.55 -8.07 14.49 5.28 0.08 -7.99 16 10 N -0.69 -8.56 5.51 -61.39 -0.34 -8.90 16 11 C 0.17 1.96 5.68 -4.04 -0.02 1.94 16 12 C 0.04 0.40 1.81 -131.61 -0.24 0.16 16 13 N -0.63 -9.44 6.29 -101.23 -0.64 -10.08 16 14 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 15 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 16 O -0.56 -15.24 15.79 5.55 0.09 -15.15 16 17 N -0.59 -14.22 5.09 -10.97 -0.06 -14.28 16 18 C -0.30 -8.71 10.16 -14.93 -0.15 -8.87 16 19 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 22 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 26 C -0.20 -1.92 10.07 -26.70 -0.27 -2.19 16 27 C -0.16 -1.51 9.89 -26.70 -0.26 -1.78 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 7.84 -51.93 -0.41 0.23 16 31 H 0.09 0.48 8.13 -51.92 -0.42 0.06 16 32 H 0.11 1.09 6.65 -51.93 -0.35 0.74 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.42 5.18 8.09 -40.82 -0.33 4.85 16 36 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 37 H 0.08 1.06 6.52 -51.93 -0.34 0.73 16 38 H 0.36 5.53 8.32 -39.29 -0.33 5.21 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.37 6.62 -51.92 -0.34 1.03 16 41 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -35.49 390.17 -8.40 -43.89 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -6.52 Total: 18.33 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -2.51 Total: 9.07 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.69 Total: -68.91 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.16 Total: -23.14 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.49 -8.40 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.956 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds