Wall clock time and date at job start Tue Mar 31 2020 19:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47496 * 2 1 4 4 C 1.35406 * 126.43775 * 265.14825 * 3 2 1 5 5 C 1.35567 * 107.15962 * 180.23811 * 4 3 2 6 6 N 1.33103 * 108.34886 * 359.76970 * 5 4 3 7 7 C 1.31618 * 109.09495 * 359.97438 * 6 5 4 8 8 C 1.47407 * 125.86361 * 179.97438 * 7 6 5 9 9 O 1.21600 * 120.00109 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99988 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00000 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46948 * 175.57450 * 11 10 8 13 13 N 1.46895 * 115.54923 * 279.61218 * 12 11 10 14 14 C 1.46893 * 111.00492 * 294.62910 * 13 12 11 15 15 C 1.50696 * 109.47424 * 179.58952 * 14 13 12 16 16 O 1.21288 * 120.00138 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00251 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00459 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99988 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00268 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99905 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99937 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47432 * 89.99943 * 22 20 18 24 24 H 1.48502 * 109.46967 * 209.99893 * 22 20 18 25 25 H 1.48503 * 109.47004 * 329.99647 * 22 20 18 26 26 C 1.52993 * 117.49542 * 133.94643 * 12 11 10 27 27 C 1.52996 * 117.49657 * 65.28777 * 12 11 10 28 28 H 1.08994 * 109.47166 * 59.99673 * 1 2 3 29 29 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46552 * 299.99946 * 1 2 3 31 31 H 1.09007 * 109.47105 * 239.99867 * 2 1 3 32 32 H 1.09003 * 109.47315 * 120.00573 * 2 1 3 33 33 H 1.07997 * 126.42031 * 359.96801 * 4 3 2 34 34 H 1.08000 * 125.82359 * 179.75194 * 5 4 3 35 35 H 0.97005 * 120.00092 * 0.27845 * 10 8 7 36 36 H 1.09005 * 109.46974 * 295.57393 * 11 10 8 37 37 H 1.08993 * 109.46942 * 55.57711 * 11 10 8 38 38 H 1.00903 * 110.99820 * 170.67214 * 13 12 11 39 39 H 1.09003 * 109.46999 * 299.59512 * 14 13 12 40 40 H 1.09007 * 109.46928 * 59.59046 * 14 13 12 41 41 H 0.97007 * 119.99967 * 0.02562 * 17 15 14 42 42 H 0.97006 * 119.99634 * 179.97438 * 21 20 18 43 43 H 1.09003 * 117.50382 * 359.97438 * 26 12 11 44 44 H 1.09000 * 117.49932 * 145.01957 * 26 12 11 45 45 H 1.09008 * 117.49543 * 214.97577 * 27 12 11 46 46 H 1.08998 * 117.50454 * 359.97052 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1087 -1.0854 5 6 2.7694 3.3260 -0.6390 6 7 2.6543 3.3438 0.6869 7 6 2.1982 2.1786 1.0952 8 6 1.9334 1.7970 2.4942 9 8 1.5110 0.6862 2.7518 10 7 2.1595 2.6792 3.4877 11 6 1.8969 2.2996 4.8781 12 6 2.3373 3.4323 5.8078 13 7 3.7761 3.4904 6.0980 14 6 4.2082 2.3094 6.8572 15 6 5.6881 2.3994 7.1270 16 8 6.3206 3.3537 6.7266 17 7 6.3087 1.4200 7.8140 18 6 7.6549 1.5020 8.0599 19 1 8.2183 2.3514 7.7026 20 6 8.2948 0.4920 8.7678 21 7 9.5853 0.5705 9.0029 22 14 7.3208 -0.9781 9.3838 23 1 7.3233 -2.0427 8.3485 24 1 7.9422 -1.4970 10.6288 25 1 5.9227 -0.5633 9.6641 26 6 1.3745 3.8459 6.9225 27 6 1.5817 4.7592 5.7117 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3500 1.7793 -2.1137 34 1 3.1189 4.1419 -1.2543 35 1 2.4926 3.5666 3.2818 36 1 0.8305 2.1157 5.0093 37 1 2.4541 1.3944 5.1190 38 1 4.0123 4.3409 6.5869 39 1 3.6683 2.2681 7.8032 40 1 3.9983 1.4092 6.2795 41 1 5.8028 0.6569 8.1346 42 1 10.0319 -0.1345 9.4975 43 1 0.4271 3.3115 6.9934 44 1 1.8087 4.1616 7.8711 45 1 2.1523 5.6754 5.8643 46 1 0.7713 4.8255 4.9859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699649945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:01 Heat of formation + Delta-G solvation = -0.501469 kcal Electronic energy + Delta-G solvation = -28499.481969 eV Core-core repulsion = 24425.299241 eV Total energy + Delta-G solvation = -4074.182728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.26899 -40.83250 -40.23398 -39.17293 -36.24816 -36.06416 -35.07961 -34.02079 -33.66014 -31.47733 -30.78397 -28.47423 -28.12576 -25.68968 -25.07169 -23.89656 -23.25918 -22.29860 -21.34105 -21.16176 -20.52518 -20.28867 -18.82077 -17.93284 -17.40375 -17.22184 -17.01712 -16.87992 -16.57619 -16.23098 -15.77540 -15.58930 -15.48303 -15.26794 -14.89563 -14.72750 -14.70997 -14.44308 -14.25281 -14.14258 -13.84623 -13.64417 -13.50458 -13.02025 -12.99434 -12.90688 -12.43413 -12.40462 -12.32940 -11.99434 -11.90656 -11.54082 -11.40671 -11.18567 -11.12430 -10.83511 -10.44213 -10.27276 -10.21770 -9.49538 -9.27363 -8.43385 -6.04323 0.33714 1.28319 1.33922 1.42189 1.42524 1.63350 1.91855 2.19507 2.21084 2.38855 2.54667 2.93126 3.12526 3.28814 3.34836 3.58464 3.72327 3.75142 3.86490 4.00289 4.05559 4.12348 4.34842 4.38602 4.41553 4.45246 4.48505 4.55819 4.64059 4.73359 4.75669 4.78346 4.80202 5.01058 5.13223 5.21889 5.25070 5.31361 5.50296 5.67216 5.86632 5.94054 5.99058 6.29216 6.35420 6.56918 6.83162 6.85328 7.06536 7.36639 7.92730 8.74267 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.002663 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.857692 B =10513.819323 C =11362.672314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 N -0.414 5.414 4 C -0.009 4.009 5 C -0.051 4.051 6 N -0.468 5.468 7 C 0.103 3.897 8 C 0.601 3.399 9 O -0.566 6.566 10 N -0.688 5.688 11 C 0.171 3.829 12 C 0.020 3.980 13 N -0.644 5.644 14 C 0.064 3.936 15 C 0.449 3.551 16 O -0.613 6.613 17 N -0.590 5.590 18 C -0.329 4.329 19 H 0.056 0.944 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.231 1.231 26 C -0.186 4.186 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.039 0.961 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.200 0.800 35 H 0.416 0.584 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.352 0.648 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.389 0.611 42 H 0.280 0.720 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.480 -1.054 -17.255 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.095 5.095 4 C -0.148 4.148 5 C -0.204 4.204 6 N -0.190 5.190 7 C -0.155 4.155 8 C 0.386 3.614 9 O -0.446 6.446 10 N -0.338 5.338 11 C 0.047 3.953 12 C -0.073 4.073 13 N -0.275 5.275 14 C -0.068 4.068 15 C 0.237 3.763 16 O -0.497 6.497 17 N -0.232 5.232 18 C -0.458 4.458 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.574 5.574 22 Si 0.783 3.217 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.154 1.154 26 C -0.226 4.226 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.217 0.783 35 H 0.253 0.747 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.172 0.828 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.225 0.775 42 H 0.089 0.911 43 H 0.136 0.864 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.837 -1.095 -17.225 31.072 hybrid contribution 0.265 -0.618 0.806 1.050 sum -25.572 -1.713 -16.419 30.438 Atomic orbital electron populations 1.22001 0.92823 1.04266 1.02074 1.22309 0.96873 0.77822 1.06033 1.45524 1.44567 1.13421 1.05943 1.23657 1.03870 0.92992 0.94264 1.23014 1.07710 0.99358 0.90309 1.70156 1.15143 1.19313 1.14429 1.22493 1.12860 0.89578 0.90571 1.16640 0.77768 0.84244 0.82769 1.90761 1.48286 1.21355 1.84172 1.45568 1.65146 1.17360 1.05738 1.20823 1.00870 0.95567 0.77999 1.21770 0.85500 0.98410 1.01596 1.59760 1.12610 1.04377 1.50772 1.21576 0.90113 0.96267 0.98873 1.20907 0.90818 0.83386 0.81198 1.90547 1.68663 1.35100 1.55386 1.42027 1.08101 1.21794 1.51277 1.19008 0.83906 1.08027 1.34884 0.92629 1.26106 0.96821 1.01595 0.96757 1.69803 1.10767 1.35847 1.40974 0.85387 0.79762 0.77689 0.78849 1.18391 1.19749 1.15378 1.23704 1.01776 1.03550 0.93611 1.23244 1.01804 0.92923 1.01053 0.91082 0.88619 0.94146 0.85525 0.89402 0.75694 0.78299 0.74719 0.88938 0.91630 0.82805 0.90043 0.87835 0.77527 0.91090 0.86392 0.88297 0.88074 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.23 71.98 0.74 -1.19 16 2 C 0.09 1.30 6.17 86.38 0.53 1.84 16 3 N -0.41 -7.97 2.76 -516.43 -1.42 -9.39 16 4 C -0.01 -0.12 11.53 83.52 0.96 0.84 16 5 C -0.05 -0.95 11.85 83.88 0.99 0.05 16 6 N -0.47 -12.14 10.89 -189.53 -2.06 -14.20 16 7 C 0.10 2.65 7.78 136.28 1.06 3.71 16 8 C 0.60 16.57 7.81 86.66 0.68 17.25 16 9 O -0.57 -17.00 14.49 -4.03 -0.06 -17.05 16 10 N -0.69 -17.10 5.51 -466.39 -2.57 -19.67 16 11 C 0.17 3.77 5.68 86.38 0.49 4.26 16 12 C 0.02 0.42 1.81 3.53 0.01 0.42 16 13 N -0.64 -19.06 6.29 -474.18 -2.98 -22.04 16 14 C 0.06 2.02 6.01 85.56 0.51 2.54 16 15 C 0.45 20.82 7.82 87.66 0.69 21.50 16 16 O -0.61 -34.67 15.79 -3.06 -0.05 -34.71 16 17 N -0.59 -28.60 5.09 -306.99 -1.56 -30.16 16 18 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 19 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 21 N -0.93 -57.06 13.96 21.66 0.30 -56.75 16 22 Si 0.96 39.57 27.74 68.60 1.90 41.47 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 26 C -0.19 -2.94 10.07 30.62 0.31 -2.63 16 27 C -0.15 -2.53 9.89 30.62 0.30 -2.23 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.74 7.84 -2.39 -0.02 0.72 16 31 H 0.13 0.92 8.13 -2.38 -0.02 0.90 16 32 H 0.09 1.71 6.65 -2.39 -0.02 1.69 16 33 H 0.23 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.42 10.47 8.09 -92.70 -0.75 9.73 16 36 H 0.09 1.71 7.95 -2.38 -0.02 1.69 16 37 H 0.07 1.65 6.52 -2.39 -0.02 1.64 16 38 H 0.35 10.89 8.32 -89.69 -0.75 10.15 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 3.03 6.62 -2.38 -0.02 3.01 16 41 H 0.39 15.71 5.76 -92.70 -0.53 15.18 16 42 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 43 H 0.12 1.44 8.08 -2.39 -0.02 1.42 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -84.71 390.17 -0.96 -85.67 By element: Atomic # 1 Polarization: 50.67 SS G_CDS: -1.05 Total: 49.62 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 8.59 Total: 27.21 kcal Atomic # 7 Polarization: -141.91 SS G_CDS: -10.30 Total: -152.21 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.11 Total: -51.77 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -84.71 -0.96 -85.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.170 kcal (2) G-P(sol) polarization free energy of solvation -84.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds