Wall clock time and date at job start Tue Mar 31 2020 19:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47228 * 2 1 4 4 C 1.35029 * 124.88113 * 125.02706 * 3 2 1 5 5 C 1.35371 * 107.22571 * 179.72662 * 4 3 2 6 6 C 1.41501 * 105.49961 * 0.41043 * 5 4 3 7 7 C 1.47716 * 126.51412 * 179.84261 * 6 5 4 8 8 O 1.21568 * 120.00091 * 359.71725 * 7 6 5 9 9 N 1.34781 * 119.99781 * 179.71866 * 7 6 5 10 10 C 1.46498 * 119.99730 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.85175 * 23.80521 * 10 9 7 12 12 C 1.53780 * 113.60979 * 154.99970 * 10 9 7 13 13 C 1.53776 * 87.08204 * 89.20011 * 12 10 9 14 14 H 1.08998 * 113.61509 * 270.80045 * 13 12 10 15 15 N 1.46902 * 113.61346 * 139.97509 * 13 12 10 16 16 C 1.46904 * 110.99709 * 155.00073 * 15 13 12 17 17 C 1.50700 * 109.47124 * 180.02562 * 16 15 13 18 18 O 1.21292 * 119.99931 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99956 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99857 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00058 * 0.27796 * 20 19 17 22 22 C 1.38955 * 119.99721 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99445 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99993 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47326 * 89.99949 * 24 22 20 26 26 H 1.48506 * 109.46545 * 209.99699 * 24 22 20 27 27 H 1.48498 * 109.47210 * 329.99410 * 24 22 20 28 28 C 1.53772 * 113.69048 * 252.53297 * 10 9 7 29 29 N 1.28469 * 124.88184 * 305.02809 * 3 2 1 30 30 H 1.09002 * 109.46767 * 299.99778 * 1 2 3 31 31 H 1.08996 * 109.47576 * 59.99668 * 1 2 3 32 32 H 1.09003 * 109.47566 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46847 * 239.99686 * 2 1 3 34 34 H 1.09002 * 109.46947 * 120.00557 * 2 1 3 35 35 H 1.07998 * 126.39009 * 359.97438 * 4 3 2 36 36 H 1.08002 * 127.24875 * 180.26152 * 5 4 3 37 37 H 0.97004 * 119.99753 * 359.97438 * 9 7 6 38 38 H 1.08998 * 113.61671 * 334.65090 * 12 10 9 39 39 H 1.09007 * 113.68874 * 203.76298 * 12 10 9 40 40 H 1.00898 * 111.00101 * 31.05582 * 15 13 12 41 41 H 1.08997 * 109.47232 * 59.99940 * 16 15 13 42 42 H 1.09002 * 109.47005 * 300.00439 * 16 15 13 43 43 H 0.96999 * 120.00050 * 0.02562 * 19 17 16 44 44 H 0.97000 * 119.99412 * 180.02562 * 23 22 20 45 45 H 1.09003 * 113.61505 * 156.32412 * 28 10 9 46 46 H 1.09004 * 113.61579 * 25.42719 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8752 1.8973 0.9071 5 6 3.0878 3.1903 0.5673 6 6 2.3002 3.4124 -0.5871 7 6 2.1852 4.6763 -1.3428 8 8 2.8023 5.6592 -0.9810 9 7 1.3960 4.7398 -2.4336 10 6 1.2815 5.9935 -3.1828 11 1 2.1413 6.6492 -3.0447 12 6 0.8873 5.7968 -4.6561 13 6 -0.5770 5.8798 -4.1937 14 1 -1.0017 4.9159 -3.9136 15 7 -1.4404 6.6399 -5.1074 16 6 -2.8418 6.2180 -4.9804 17 6 -3.6952 7.0174 -5.9311 18 8 -3.1861 7.8564 -6.6439 19 7 -5.0241 6.8007 -5.9885 20 6 -5.8006 7.5283 -6.8530 21 1 -5.3467 8.2719 -7.4912 22 6 -7.1707 7.3045 -6.9126 23 7 -7.9149 8.0023 -7.7409 24 14 -7.9547 6.0129 -5.8143 25 1 -8.3635 6.6369 -4.5303 26 1 -9.1487 5.4461 -6.4914 27 1 -6.9754 4.9288 -5.5482 28 6 -0.0702 6.7028 -2.9975 29 7 1.6930 2.2755 -0.8630 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3128 1.3748 1.7448 36 1 3.7228 3.9030 1.0726 37 1 0.9039 3.9554 -2.7225 38 1 1.1643 4.8213 -5.0558 39 1 1.1881 6.6204 -5.3038 40 1 -1.1220 6.5542 -6.0609 41 1 -3.1807 6.3862 -3.9582 42 1 -2.9253 5.1582 -5.2210 43 1 -5.4314 6.1305 -5.4176 44 1 -8.8714 7.8463 -7.7822 45 1 -0.0308 7.7749 -3.1904 46 1 -0.5663 6.4588 -2.0581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713169634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:54 Heat of formation + Delta-G solvation = 9.448901 kcal Electronic energy + Delta-G solvation = -27549.457837 eV Core-core repulsion = 23475.706589 eV Total energy + Delta-G solvation = -4073.751248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61218 -41.19607 -40.26909 -39.27282 -36.17563 -35.50800 -35.41525 -33.80172 -33.51897 -31.63200 -30.85824 -28.66682 -26.69962 -26.45323 -25.59884 -23.98149 -23.13587 -22.36903 -21.34330 -21.07911 -20.47442 -20.10807 -18.84540 -17.95188 -17.60250 -17.20033 -16.99850 -16.86405 -16.55440 -16.02618 -15.91956 -15.66988 -15.42453 -15.23470 -14.97271 -14.80447 -14.51123 -14.39792 -14.10476 -14.01690 -13.44548 -13.33318 -13.28836 -13.10273 -12.97143 -12.92123 -12.57448 -12.41562 -12.30904 -11.98307 -11.85116 -11.55391 -11.50817 -11.48450 -11.29621 -10.42979 -10.31670 -10.25289 -10.11933 -9.94849 -9.31928 -8.41623 -6.02542 0.51703 1.21217 1.29403 1.35580 1.44107 1.54925 1.95050 2.11501 2.22741 2.34188 2.74281 3.14543 3.32420 3.41352 3.54042 3.61451 3.89138 3.95727 3.98495 4.06537 4.11883 4.15879 4.26538 4.38224 4.42447 4.54384 4.56010 4.73370 4.77283 4.81255 4.85319 4.87516 4.89663 4.98404 5.07253 5.13539 5.24191 5.37161 5.50195 5.55981 5.90890 5.92181 6.11772 6.40909 6.41700 6.59505 6.87627 6.91060 7.14516 7.39250 7.95878 8.76063 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.002054 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.934355 B =13631.049084 C =15275.803467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 N -0.276 5.276 4 C 0.000 4.000 5 C -0.206 4.206 6 C -0.050 4.050 7 C 0.604 3.396 8 O -0.572 6.572 9 N -0.688 5.688 10 C 0.122 3.878 11 H 0.095 0.905 12 C -0.133 4.133 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.673 5.673 16 C 0.061 3.939 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.230 1.230 28 C -0.136 4.136 29 N -0.270 5.270 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.226 0.774 36 H 0.161 0.839 37 H 0.414 0.586 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.348 0.652 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.089 0.911 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.201 -25.479 21.973 39.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.066 5.066 4 C -0.143 4.143 5 C -0.234 4.234 6 C -0.208 4.208 7 C 0.390 3.610 8 O -0.449 6.449 9 N -0.339 5.339 10 C 0.016 3.984 11 H 0.113 0.887 12 C -0.171 4.171 13 C -0.047 4.047 14 H 0.107 0.893 15 N -0.306 5.306 16 C -0.071 4.071 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.154 1.154 28 C -0.176 4.176 29 N -0.108 5.108 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.243 0.757 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.168 0.832 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.922 -24.265 21.299 38.473 hybrid contribution -0.644 -0.621 0.004 0.895 sum 20.277 -24.886 21.303 38.527 Atomic orbital electron populations 1.22069 0.93350 1.04499 1.02516 1.22469 0.96507 0.74808 1.07245 1.46116 1.31504 1.11142 1.17821 1.23490 0.97547 0.94546 0.98677 1.22010 1.05149 0.97777 0.98491 1.21834 1.04838 0.93090 1.01036 1.17186 0.78329 0.85671 0.79787 1.90768 1.47797 1.37258 1.69092 1.45450 1.46865 1.14119 1.27454 1.21676 0.98572 0.85909 0.92208 0.88658 1.23517 0.94191 1.04312 0.95107 1.23198 0.91958 0.95557 0.94034 0.89261 1.60184 1.00342 1.58233 1.11842 1.21694 0.89077 0.97121 0.99203 1.21009 0.82584 0.86309 0.86498 1.90544 1.73414 1.38376 1.47486 1.42039 1.07024 1.36466 1.37761 1.19012 0.90429 1.18348 1.18028 0.92703 1.26144 0.95913 1.00546 0.98936 1.69808 1.06986 1.42361 1.38322 0.85348 0.79107 0.78564 0.78390 1.18300 1.19919 1.15358 1.23518 0.95446 1.00623 0.98015 1.73377 1.22340 0.98112 1.16966 0.92696 0.92799 0.87966 0.87727 0.84103 0.75749 0.82155 0.74891 0.89097 0.87725 0.83165 0.87385 0.90283 0.77482 0.91139 0.89261 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.02 71.98 0.72 0.01 16 2 C 0.11 0.25 7.12 86.38 0.61 0.87 16 3 N -0.28 -2.99 3.41 -347.95 -1.19 -4.17 16 4 C 0.00 0.00 11.40 83.54 0.95 0.95 16 5 C -0.21 -3.49 10.81 22.41 0.24 -3.24 16 6 C -0.05 -1.05 7.13 42.46 0.30 -0.75 16 7 C 0.60 15.08 7.83 86.75 0.68 15.76 16 8 O -0.57 -18.16 16.52 -3.93 -0.06 -18.23 16 9 N -0.69 -13.84 5.26 -443.04 -2.33 -16.17 16 10 C 0.12 2.54 4.32 45.51 0.20 2.74 16 11 H 0.10 2.26 7.46 -2.39 -0.02 2.24 16 12 C -0.13 -2.39 7.40 31.12 0.23 -2.16 16 13 C 0.06 1.31 4.02 45.44 0.18 1.50 16 14 H 0.09 1.59 7.87 -2.39 -0.02 1.57 16 15 N -0.67 -19.68 6.18 -492.85 -3.05 -22.73 16 16 C 0.06 1.89 6.01 85.56 0.51 2.40 16 17 C 0.45 20.45 7.82 87.66 0.69 21.13 16 18 O -0.61 -34.44 15.78 -3.07 -0.05 -34.49 16 19 N -0.59 -28.16 5.09 -306.98 -1.56 -29.72 16 20 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 21 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 23 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 24 Si 0.97 38.95 27.74 68.60 1.90 40.85 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 28 C -0.14 -3.11 7.68 31.12 0.24 -2.87 16 29 N -0.27 -4.70 11.36 -48.17 -0.55 -5.25 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.47 8.08 -2.39 -0.02 0.46 16 32 H 0.10 -0.01 8.14 -2.39 -0.02 -0.02 16 33 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.14 -0.68 8.04 -2.39 -0.02 -0.70 16 35 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.41 6.84 8.43 -92.71 -0.78 6.06 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.35 10.65 8.24 -89.70 -0.74 9.91 16 41 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 43 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.69 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -87.40 392.21 -0.78 -88.18 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.08 Total: 40.93 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.88 Total: 17.24 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -8.37 Total: -134.48 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.11 Total: -52.72 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.90 Total: 40.85 kcal Total: -87.40 -0.78 -88.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713169634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.633 kcal (2) G-P(sol) polarization free energy of solvation -87.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds