Wall clock time and date at job start Tue Mar 31 2020 18:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.52998 * 109.47215 * 120.00200 * 2 1 3 5 5 N 1.46499 * 109.47127 * 174.99792 * 4 2 1 6 6 C 1.34777 * 119.99839 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99769 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.56587 * 34.31293 * 8 6 5 10 10 C 1.53000 * 117.50175 * 248.62488 * 8 6 5 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 6 12 12 H 1.08997 * 117.50044 * 107.48590 * 11 10 8 13 13 C 1.50698 * 117.51636 * 252.52170 * 11 10 8 14 14 C 1.34668 * 126.59360 * 33.64860 * 13 11 10 15 15 N 1.34132 * 108.01908 * 179.97438 * 14 13 11 16 16 C 1.30496 * 109.25752 * 359.97438 * 15 14 13 17 17 N 1.35042 * 108.70240 * 359.77418 * 16 15 14 18 18 H 0.96995 * 126.40393 * 180.26129 * 17 16 15 19 19 N 1.46900 * 109.46715 * 240.00117 * 2 1 3 20 20 C 1.46899 * 110.99918 * 85.00232 * 19 2 1 21 21 C 1.50703 * 109.47144 * 179.97438 * 20 19 2 22 22 O 1.21288 * 119.99752 * 359.97438 * 21 20 19 23 23 N 1.34774 * 119.99930 * 179.97438 * 21 20 19 24 24 C 1.37095 * 119.99579 * 179.97438 * 23 21 20 25 25 H 1.07997 * 120.00316 * 0.02562 * 24 23 21 26 26 C 1.38953 * 119.99890 * 179.97438 * 24 23 21 27 27 N 1.31411 * 119.99970 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00087 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46991 * 60.00121 * 28 26 24 30 30 H 1.48497 * 109.46784 * 179.97438 * 28 26 24 31 31 H 1.48494 * 109.47158 * 300.00289 * 28 26 24 32 32 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46872 * 299.99822 * 1 2 3 34 34 H 1.08996 * 109.47176 * 59.99301 * 1 2 3 35 35 H 1.09003 * 109.47068 * 54.99366 * 4 2 1 36 36 H 1.09002 * 109.47121 * 295.00188 * 4 2 1 37 37 H 0.96996 * 119.99814 * 359.97438 * 5 4 2 38 38 H 1.09002 * 117.49696 * 0.02562 * 10 8 6 39 39 H 1.09002 * 117.50343 * 145.02291 * 10 8 6 40 40 H 1.07998 * 125.98796 * 359.96025 * 14 13 11 41 41 H 1.07997 * 125.64706 * 180.02562 * 16 15 14 42 42 H 1.00903 * 110.99878 * 208.95355 * 19 2 1 43 43 H 1.09001 * 109.47091 * 299.99631 * 20 19 2 44 44 H 1.08999 * 109.47391 * 59.99713 * 20 19 2 45 45 H 0.96998 * 120.00172 * 359.97438 * 23 21 20 46 46 H 0.97000 * 120.00555 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4284 2.1911 7 8 3.5701 -1.8834 3.1398 8 6 5.6750 -1.5370 2.1304 9 1 6.1885 -0.6995 1.6581 10 6 6.2753 -2.9315 1.9405 11 6 6.3808 -2.2315 3.2969 12 1 5.7588 -2.6097 4.1081 13 6 7.7323 -1.7047 3.7053 14 6 8.6773 -1.2000 2.8893 15 7 9.7285 -0.8436 3.6424 16 6 9.4706 -1.1078 4.8940 17 7 8.2328 -1.6413 4.9778 18 1 7.7832 -1.9279 5.7881 19 7 2.0197 -0.6925 -1.1995 20 6 2.0824 0.2226 -2.3469 21 6 2.5884 -0.5214 -3.5558 22 8 2.8695 -1.6982 -3.4698 23 7 2.7285 0.1207 -4.7324 24 6 3.1893 -0.5561 -5.8320 25 1 3.4396 -1.6039 -5.7555 26 6 3.3333 0.1057 -7.0453 27 7 3.0273 1.3803 -7.1388 28 14 3.9618 -0.8163 -8.5434 29 1 3.0424 -1.9401 -8.8547 30 1 4.0233 0.1083 -9.7037 31 1 5.3187 -1.3502 -8.2627 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1370 37 1 3.9824 -0.4629 0.4315 38 1 5.5840 -3.7702 1.8590 39 1 7.1837 -3.0114 1.3434 40 1 8.6020 -1.1001 1.8166 41 1 10.1351 -0.9257 5.7256 42 1 2.9173 -1.1205 -1.0288 43 1 1.0871 0.6164 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5034 1.0617 -4.8012 46 1 3.1281 1.8425 -7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713317630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:37 Heat of formation + Delta-G solvation = 12.117656 kcal Electronic energy + Delta-G solvation = -27625.900480 eV Core-core repulsion = 23552.264958 eV Total energy + Delta-G solvation = -4073.635522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42207 -40.24170 -38.54087 -37.43370 -36.50361 -34.17748 -33.75672 -32.83713 -31.35666 -30.89888 -29.62417 -27.15445 -26.36299 -24.26889 -23.79508 -23.48192 -21.95733 -20.87456 -20.71634 -20.14527 -19.31939 -18.47997 -17.96436 -17.47335 -16.45859 -16.16626 -15.67116 -15.37319 -15.28223 -15.14194 -14.78787 -14.53287 -14.38416 -14.21135 -13.90308 -13.80907 -13.47720 -12.95701 -12.81408 -12.65538 -12.55716 -12.30271 -11.93667 -11.79722 -11.69956 -11.45208 -11.37938 -11.08404 -11.00204 -10.89045 -10.46141 -10.32861 -10.32332 -10.23912 -10.11038 -9.52904 -9.29094 -8.60470 -8.51540 -8.17201 -7.99532 -6.44437 -3.85456 1.54557 2.28339 2.62298 2.79134 2.97414 3.18484 3.24667 3.28852 3.63941 3.86119 4.00242 4.15756 4.25324 4.33922 4.42820 4.49610 4.59693 4.72706 4.77232 4.94175 5.00171 5.14219 5.18920 5.21762 5.25025 5.38708 5.47651 5.51321 5.63488 5.65045 5.70241 5.73888 5.91869 5.93646 5.94289 6.12548 6.21531 6.31749 6.36478 6.99109 7.10422 7.22787 7.52401 7.53047 7.71152 7.97946 8.02777 8.57686 9.14782 9.50657 10.01782 10.73059 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.002241 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.524842 B =12491.510527 C =14529.911934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.724 5.724 6 C 0.548 3.452 7 O -0.543 6.543 8 C -0.176 4.176 9 H 0.130 0.870 10 C -0.128 4.128 11 C -0.056 4.056 12 H 0.125 0.875 13 C 0.010 3.990 14 C -0.021 4.021 15 N -0.492 5.492 16 C 0.183 3.817 17 N -0.565 5.565 18 H 0.420 0.580 19 N -0.664 5.664 20 C 0.049 3.951 21 C 0.439 3.561 22 O -0.583 6.583 23 N -0.562 5.562 24 C -0.300 4.300 25 H 0.103 0.897 26 C 0.023 3.977 27 N -0.901 5.901 28 Si 0.931 3.069 29 H -0.273 1.273 30 H -0.284 1.284 31 H -0.273 1.273 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.170 0.830 41 H 0.209 0.791 42 H 0.348 0.652 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -0.987 23.402 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.376 5.376 6 C 0.334 3.666 7 O -0.421 6.421 8 C -0.198 4.198 9 H 0.148 0.852 10 C -0.165 4.165 11 C -0.076 4.076 12 H 0.143 0.857 13 C -0.106 4.106 14 C -0.169 4.169 15 N -0.210 5.210 16 C -0.100 4.100 17 N -0.168 5.168 18 H 0.258 0.742 19 N -0.299 5.299 20 C -0.083 4.083 21 C 0.224 3.776 22 O -0.467 6.467 23 N -0.198 5.198 24 C -0.430 4.430 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.542 5.542 28 Si 0.758 3.242 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.199 1.199 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.187 0.813 41 H 0.225 0.775 42 H 0.169 0.831 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.861 -1.844 23.458 24.028 hybrid contribution 0.181 0.640 -0.353 0.753 sum 5.042 -1.204 23.106 23.680 Atomic orbital electron populations 1.21739 0.93349 1.02983 1.01580 1.21814 0.97176 0.95940 0.88991 0.93303 1.21631 0.79065 1.02107 0.97722 1.45958 1.08159 1.59894 1.23628 1.19515 0.88058 0.77090 0.81952 1.90691 1.70001 1.47945 1.33425 1.22399 0.92499 0.99861 1.05010 0.85169 1.23186 1.02941 0.93360 0.97053 1.20118 0.91542 1.02546 0.93396 0.85745 1.20309 0.96892 1.08619 0.84736 1.22100 0.90392 1.04463 0.99928 1.70312 1.27737 1.21454 1.01544 1.25002 0.86347 1.01353 0.97340 1.43194 1.15689 1.49156 1.08750 0.74190 1.60126 1.34842 1.32264 1.02678 1.21759 1.01512 0.93785 0.91291 1.19777 0.85151 0.88217 0.84452 1.90529 1.55361 1.16084 1.84730 1.41855 1.57579 1.12451 1.07963 1.19650 1.40079 0.96457 0.86810 0.87950 1.25268 0.97590 0.95784 0.99252 1.69599 1.48443 1.08888 1.27317 0.85915 0.79445 0.78851 0.80006 1.19872 1.20973 1.19873 0.91496 0.92508 0.91924 0.90228 0.90803 0.76292 0.87156 0.86792 0.81277 0.77454 0.83113 0.89401 0.93834 0.77464 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.42 37.16 0.35 -1.09 16 2 C 0.07 0.79 2.81 -67.71 -0.19 0.60 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.28 5.31 -4.04 -0.02 1.25 16 5 N -0.72 -7.57 4.99 -60.30 -0.30 -7.87 16 6 C 0.55 6.24 7.61 -10.99 -0.08 6.16 16 7 O -0.54 -7.87 16.26 5.56 0.09 -7.78 16 8 C -0.18 -1.56 5.71 -91.77 -0.52 -2.08 16 9 H 0.13 0.98 7.98 -51.93 -0.41 0.57 16 10 C -0.13 -1.02 9.76 -26.73 -0.26 -1.28 16 11 C -0.06 -0.47 5.84 -91.77 -0.54 -1.01 16 12 H 0.12 1.10 7.67 -51.93 -0.40 0.70 16 13 C 0.01 0.09 6.92 -81.60 -0.56 -0.48 16 14 C -0.02 -0.21 10.94 -17.81 -0.19 -0.40 16 15 N -0.49 -5.43 11.25 -14.67 -0.17 -5.59 16 16 C 0.18 1.37 13.04 -90.38 -1.18 0.19 16 17 N -0.56 -3.75 6.15 -10.30 -0.06 -3.82 16 18 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 19 N -0.66 -9.86 5.93 -107.99 -0.64 -10.50 16 20 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 21 C 0.44 9.96 7.82 -10.99 -0.09 9.88 16 22 O -0.58 -15.34 15.78 5.55 0.09 -15.25 16 23 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 24 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 25 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 26 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 27 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 28 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 31 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.78 7.37 -40.82 -0.30 3.48 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.11 0.79 7.95 -51.93 -0.41 0.38 16 40 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.35 5.27 6.41 -39.29 -0.25 5.02 16 43 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 44 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -35.40 393.16 -9.52 -44.91 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -6.53 Total: 16.85 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -3.56 Total: 4.66 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.50 Total: -65.09 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.40 -9.52 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713317630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.032 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds