Wall clock time and date at job start Tue Mar 31 2020 18:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.52998 * 109.47215 * 120.00200 * 2 1 3 5 5 N 1.46499 * 109.47127 * 174.99792 * 4 2 1 6 6 C 1.34777 * 119.99839 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99769 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.56587 * 34.31293 * 8 6 5 10 10 C 1.53000 * 117.50175 * 248.62488 * 8 6 5 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 6 12 12 H 1.08997 * 117.50044 * 107.48590 * 11 10 8 13 13 C 1.50698 * 117.51636 * 252.52170 * 11 10 8 14 14 C 1.34668 * 126.59360 * 33.64860 * 13 11 10 15 15 N 1.34132 * 108.01908 * 179.97438 * 14 13 11 16 16 C 1.30496 * 109.25752 * 359.97438 * 15 14 13 17 17 N 1.35042 * 108.70240 * 359.77418 * 16 15 14 18 18 H 0.96995 * 126.40393 * 180.26129 * 17 16 15 19 19 N 1.46900 * 109.46715 * 240.00117 * 2 1 3 20 20 C 1.46899 * 110.99918 * 85.00232 * 19 2 1 21 21 C 1.50703 * 109.47144 * 179.97438 * 20 19 2 22 22 O 1.21288 * 119.99752 * 359.97438 * 21 20 19 23 23 N 1.34774 * 119.99930 * 179.97438 * 21 20 19 24 24 C 1.37095 * 119.99579 * 179.97438 * 23 21 20 25 25 H 1.07997 * 120.00316 * 0.02562 * 24 23 21 26 26 C 1.38953 * 119.99890 * 179.97438 * 24 23 21 27 27 N 1.31411 * 119.99970 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00087 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46991 * 60.00121 * 28 26 24 30 30 H 1.48497 * 109.46784 * 179.97438 * 28 26 24 31 31 H 1.48494 * 109.47158 * 300.00289 * 28 26 24 32 32 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46872 * 299.99822 * 1 2 3 34 34 H 1.08996 * 109.47176 * 59.99301 * 1 2 3 35 35 H 1.09003 * 109.47068 * 54.99366 * 4 2 1 36 36 H 1.09002 * 109.47121 * 295.00188 * 4 2 1 37 37 H 0.96996 * 119.99814 * 359.97438 * 5 4 2 38 38 H 1.09002 * 117.49696 * 0.02562 * 10 8 6 39 39 H 1.09002 * 117.50343 * 145.02291 * 10 8 6 40 40 H 1.07998 * 125.98796 * 359.96025 * 14 13 11 41 41 H 1.07997 * 125.64706 * 180.02562 * 16 15 14 42 42 H 1.00903 * 110.99878 * 208.95355 * 19 2 1 43 43 H 1.09001 * 109.47091 * 299.99631 * 20 19 2 44 44 H 1.08999 * 109.47391 * 59.99713 * 20 19 2 45 45 H 0.96998 * 120.00172 * 359.97438 * 23 21 20 46 46 H 0.97000 * 120.00555 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4284 2.1911 7 8 3.5701 -1.8834 3.1398 8 6 5.6750 -1.5370 2.1304 9 1 6.1885 -0.6995 1.6581 10 6 6.2753 -2.9315 1.9405 11 6 6.3808 -2.2315 3.2969 12 1 5.7588 -2.6097 4.1081 13 6 7.7323 -1.7047 3.7053 14 6 8.6773 -1.2000 2.8893 15 7 9.7285 -0.8436 3.6424 16 6 9.4706 -1.1078 4.8940 17 7 8.2328 -1.6413 4.9778 18 1 7.7832 -1.9279 5.7881 19 7 2.0197 -0.6925 -1.1995 20 6 2.0824 0.2226 -2.3469 21 6 2.5884 -0.5214 -3.5558 22 8 2.8695 -1.6982 -3.4698 23 7 2.7285 0.1207 -4.7324 24 6 3.1893 -0.5561 -5.8320 25 1 3.4396 -1.6039 -5.7555 26 6 3.3333 0.1057 -7.0453 27 7 3.0273 1.3803 -7.1388 28 14 3.9618 -0.8163 -8.5434 29 1 3.0424 -1.9401 -8.8547 30 1 4.0233 0.1083 -9.7037 31 1 5.3187 -1.3502 -8.2627 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1370 37 1 3.9824 -0.4629 0.4315 38 1 5.5840 -3.7702 1.8590 39 1 7.1837 -3.0114 1.3434 40 1 8.6020 -1.1001 1.8166 41 1 10.1351 -0.9257 5.7256 42 1 2.9173 -1.1205 -1.0288 43 1 1.0871 0.6164 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5034 1.0617 -4.8012 46 1 3.1281 1.8425 -7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713317630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:36 Heat of formation + Delta-G solvation = -14.610873 kcal Electronic energy + Delta-G solvation = -27627.059516 eV Core-core repulsion = 23552.264958 eV Total energy + Delta-G solvation = -4074.794558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.04198 -41.13049 -40.17814 -38.51182 -37.40768 -35.96134 -34.96670 -33.46529 -33.26146 -32.08379 -30.28060 -28.19795 -27.76555 -25.80190 -24.69686 -24.21200 -22.56701 -21.70244 -21.53605 -21.15098 -20.85917 -19.90178 -19.12602 -18.41064 -17.70567 -17.15171 -16.94035 -16.71408 -16.33318 -16.04303 -15.90673 -15.69862 -15.58870 -15.26692 -15.02957 -14.87291 -14.43660 -14.28161 -13.78295 -13.64460 -13.56618 -13.46834 -13.27032 -12.97182 -12.92704 -12.80166 -12.57701 -12.41023 -12.11692 -12.07120 -11.87281 -11.70772 -11.48354 -11.03617 -11.00092 -10.95257 -10.32550 -10.19372 -9.99800 -9.36702 -9.25856 -8.45115 -5.93461 0.91615 1.40924 1.43197 1.43367 1.53643 1.94524 2.07254 2.14683 2.28123 2.30575 2.87554 2.94125 3.22550 3.48015 3.52299 3.66243 3.70104 3.80423 3.88791 4.07514 4.08121 4.17759 4.26843 4.39516 4.44041 4.47001 4.57690 4.60937 4.62877 4.74297 4.81952 4.86937 4.93276 5.00487 5.05321 5.26366 5.30808 5.42524 5.45471 5.71631 5.89004 6.09943 6.36590 6.38133 6.52980 6.61803 7.09435 7.10716 7.14457 7.58433 8.13602 8.71839 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.002241 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.524842 B =12491.510527 C =14529.911934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 H 0.068 0.932 4 C 0.123 3.877 5 N -0.719 5.719 6 C 0.545 3.455 7 O -0.578 6.578 8 C -0.178 4.178 9 H 0.144 0.856 10 C -0.123 4.123 11 C -0.049 4.049 12 H 0.120 0.880 13 C 0.006 3.994 14 C -0.041 4.041 15 N -0.539 5.539 16 C 0.193 3.807 17 N -0.556 5.556 18 H 0.435 0.565 19 N -0.680 5.680 20 C 0.064 3.936 21 C 0.437 3.563 22 O -0.623 6.623 23 N -0.572 5.572 24 C -0.333 4.333 25 H 0.079 0.921 26 C -0.013 4.013 27 N -0.920 5.920 28 Si 0.990 3.010 29 H -0.273 1.273 30 H -0.272 1.272 31 H -0.271 1.271 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.408 0.592 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.172 0.828 41 H 0.246 0.754 42 H 0.344 0.656 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -0.108 24.307 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.371 5.371 6 C 0.333 3.667 7 O -0.458 6.458 8 C -0.199 4.199 9 H 0.162 0.838 10 C -0.160 4.160 11 C -0.069 4.069 12 H 0.138 0.862 13 C -0.110 4.110 14 C -0.188 4.188 15 N -0.258 5.258 16 C -0.091 4.091 17 N -0.161 5.161 18 H 0.276 0.724 19 N -0.315 5.315 20 C -0.068 4.068 21 C 0.225 3.775 22 O -0.509 6.509 23 N -0.210 5.210 24 C -0.462 4.462 25 H 0.097 0.903 26 C -0.212 4.212 27 N -0.560 5.560 28 Si 0.814 3.186 29 H -0.199 1.199 30 H -0.196 1.196 31 H -0.196 1.196 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.244 0.756 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.189 0.811 41 H 0.262 0.738 42 H 0.165 0.835 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.119 -0.938 24.375 24.925 hybrid contribution 0.076 0.350 -0.538 0.647 sum 5.196 -0.588 23.837 24.404 Atomic orbital electron populations 1.21754 0.92675 1.02534 1.02623 1.21857 0.97549 0.96447 0.87301 0.91366 1.21567 0.79165 1.01349 0.97986 1.45948 1.08144 1.59428 1.23574 1.19906 0.89006 0.76361 0.81446 1.90671 1.70893 1.49473 1.34751 1.22400 0.90916 1.00821 1.05811 0.83808 1.23232 1.03077 0.92677 0.97053 1.20026 0.91300 1.02303 0.93265 0.86192 1.20268 0.96650 1.08657 0.85438 1.22270 0.90825 1.05273 1.00468 1.70286 1.28825 1.23464 1.03226 1.25735 0.86614 0.99377 0.97356 1.43197 1.15542 1.48539 1.08779 0.72437 1.60121 1.34866 1.32867 1.03673 1.21614 1.02555 0.93687 0.88952 1.20881 0.83234 0.87988 0.85440 1.90501 1.56619 1.18185 1.85594 1.41921 1.58213 1.12615 1.08213 1.19610 1.42057 0.95966 0.88589 0.90322 1.26008 0.97301 0.96610 1.01319 1.69657 1.48559 1.09668 1.28159 0.85022 0.78762 0.77824 0.76960 1.19876 1.19614 1.19612 0.92736 0.90053 0.92281 0.91874 0.89691 0.75558 0.87607 0.85667 0.81052 0.73783 0.83540 0.87790 0.90967 0.76955 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.42 71.99 0.68 -1.91 16 2 C 0.08 1.57 2.81 44.92 0.13 1.70 16 3 H 0.07 1.17 7.80 -2.39 -0.02 1.16 16 4 C 0.12 2.49 5.31 86.38 0.46 2.95 16 5 N -0.72 -14.31 4.99 -463.07 -2.31 -16.63 16 6 C 0.55 12.14 7.61 87.66 0.67 12.81 16 7 O -0.58 -16.66 16.26 -3.03 -0.05 -16.71 16 8 C -0.18 -3.02 5.71 -11.54 -0.07 -3.09 16 9 H 0.14 2.03 7.98 -2.38 -0.02 2.01 16 10 C -0.12 -1.90 9.76 30.59 0.30 -1.60 16 11 C -0.05 -0.79 5.84 -11.54 -0.07 -0.86 16 12 H 0.12 2.07 7.67 -2.39 -0.02 2.05 16 13 C 0.01 0.10 6.92 40.95 0.28 0.39 16 14 C -0.04 -0.81 10.94 83.52 0.91 0.11 16 15 N -0.54 -11.47 11.25 -200.32 -2.25 -13.73 16 16 C 0.19 2.55 13.04 180.26 2.35 4.90 16 17 N -0.56 -6.52 6.15 -186.49 -1.15 -7.67 16 18 H 0.43 2.30 8.96 -92.71 -0.83 1.47 16 19 N -0.68 -19.31 5.93 -495.57 -2.94 -22.24 16 20 C 0.06 2.00 5.97 85.56 0.51 2.51 16 21 C 0.44 19.84 7.82 87.66 0.69 20.52 16 22 O -0.62 -33.31 15.78 -3.05 -0.05 -33.36 16 23 N -0.57 -28.39 5.29 -306.99 -1.62 -30.01 16 24 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 25 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 26 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 27 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 28 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 30 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 31 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.16 7.45 -2.39 -0.02 1.14 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 7.16 7.37 -92.71 -0.68 6.48 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.13 1.66 7.95 -2.39 -0.02 1.64 16 40 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.25 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.34 10.16 6.41 -89.69 -0.57 9.58 16 43 H 0.10 2.96 7.44 -2.39 -0.02 2.94 16 44 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 45 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 46 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -77.21 393.16 -1.70 -78.91 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -1.77 Total: 44.97 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 8.12 Total: 20.55 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -9.99 Total: -138.77 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.10 Total: -50.06 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -77.21 -1.70 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713317630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.303 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds