Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.38613 * 120.44925 * 124.72207 * 10 9 8 12 12 C 1.38579 * 118.40011 * 179.80685 * 11 10 9 13 13 N 1.32343 * 119.10462 * 0.47031 * 12 11 10 14 14 C 1.31789 * 120.81876 * 359.74887 * 13 12 11 15 15 N 1.31802 * 121.75254 * 0.02562 * 14 13 12 16 16 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 17 17 C 1.46903 * 110.99854 * 275.00026 * 16 2 1 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 38 38 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 39 39 H 1.07999 * 120.80344 * 0.02567 * 11 10 9 40 40 H 1.08001 * 120.44986 * 180.21770 * 12 11 10 41 41 H 1.07994 * 119.12093 * 179.97438 * 14 13 12 42 42 H 1.00901 * 110.99482 * 151.05012 * 16 2 1 43 43 H 1.09001 * 109.47321 * 299.99877 * 17 16 2 44 44 H 1.08999 * 109.46905 * 60.00434 * 17 16 2 45 45 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 46 46 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.3004 -3.6252 -3.4103 12 6 9.6838 -3.6806 -3.3504 13 7 10.3666 -2.5585 -3.1886 14 6 9.7471 -1.3994 -3.0900 15 7 8.4335 -1.3080 -3.1471 16 7 2.0196 -0.6924 1.1996 17 6 2.0823 0.2229 2.3470 18 6 2.5883 -0.5212 3.5559 19 8 2.8685 -1.6982 3.4702 20 7 2.7283 0.1210 4.7325 21 6 3.1880 -0.5559 5.8324 22 1 3.4384 -1.6037 5.7560 23 6 3.3320 0.1060 7.0456 24 7 3.0279 1.3811 7.1385 25 14 3.9591 -0.8161 8.5442 26 1 4.2286 -2.2300 8.1784 27 1 5.2119 -0.1819 9.0274 28 1 2.9347 -0.7699 9.6183 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 5.7455 -3.2702 -3.4159 38 1 5.8992 -1.7110 -4.2607 39 1 7.7161 -4.5245 -3.5376 40 1 10.1977 -4.6271 -3.4305 41 1 10.3314 -0.5008 -2.9581 42 1 2.9173 -1.1204 1.0290 43 1 2.7588 1.0464 2.1183 44 1 1.0869 0.6165 2.5525 45 1 2.5038 1.0622 4.8011 46 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714238909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = -31.997972 kcal Electronic energy + Delta-G solvation = -27380.341036 eV Core-core repulsion = 23304.792517 eV Total energy + Delta-G solvation = -4075.548519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38591 -39.98721 -38.47998 -37.07851 -35.33265 -34.17581 -33.76223 -33.14087 -31.62604 -31.28475 -30.75241 -27.29670 -26.47831 -25.26837 -24.69129 -23.95712 -22.50261 -20.72833 -20.42524 -19.34617 -18.07030 -17.92825 -17.56935 -16.96589 -16.33870 -16.15171 -15.90147 -15.82920 -15.41774 -15.11643 -15.08783 -14.51998 -14.15664 -14.12321 -13.92678 -13.62422 -13.44533 -13.14006 -12.79111 -12.60563 -12.54994 -12.42732 -11.93871 -11.78540 -11.70541 -11.61593 -11.45281 -11.21876 -11.12857 -10.90984 -10.89482 -10.37620 -10.26561 -10.10261 -9.92200 -9.59618 -9.56504 -9.25517 -8.52618 -8.17819 -8.00985 -6.46123 -3.87080 0.53710 0.67051 2.47116 2.93821 3.13243 3.24324 3.31309 3.41235 3.64884 3.82445 3.84704 3.99602 4.06800 4.24506 4.43013 4.61023 4.66669 4.71489 4.78640 4.82760 4.94406 5.12849 5.14900 5.20848 5.25591 5.25826 5.36322 5.49387 5.60423 5.64670 5.68179 5.71739 5.74058 5.91626 5.95110 6.01137 6.14364 6.21694 6.32907 6.62585 7.10426 7.25054 7.51303 7.52517 7.71585 8.01526 8.01721 8.56112 9.13457 9.49250 10.00251 10.71538 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008808 B = 0.002277 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.149015 B =12294.360992 C =14864.909592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.731 5.731 6 C 0.518 3.482 7 O -0.543 6.543 8 C -0.135 4.135 9 C -0.055 4.055 10 C 0.179 3.821 11 C -0.223 4.223 12 C 0.149 3.851 13 N -0.527 5.527 14 C 0.297 3.703 15 N -0.518 5.518 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.197 0.803 42 H 0.347 0.653 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 -2.119 -21.337 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.305 3.695 7 O -0.421 6.421 8 C -0.175 4.175 9 C -0.093 4.093 10 C 0.033 3.967 11 C -0.245 4.245 12 C -0.016 4.016 13 N -0.241 5.241 14 C 0.009 3.991 15 N -0.232 5.232 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.167 0.833 40 H 0.186 0.814 41 H 0.213 0.787 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.093 -2.541 -21.620 22.606 hybrid contribution 0.714 0.258 1.069 1.311 sum 6.808 -2.283 -20.551 21.769 Atomic orbital electron populations 1.21738 0.93372 1.02972 1.01567 1.21818 0.97165 0.95944 0.89017 0.93318 1.21609 0.79278 1.02040 0.97630 1.46074 1.08234 1.60002 1.24060 1.20549 0.89854 0.77107 0.81992 1.90703 1.70488 1.47718 1.33176 1.21571 0.92013 1.04124 0.99833 1.20348 0.86679 1.03234 0.99071 1.21757 0.97088 0.88632 0.89215 1.22845 0.97232 1.00083 1.04356 1.23266 0.91265 0.97333 0.89754 1.68433 1.42024 0.99608 1.14047 1.25019 0.87902 0.95773 0.90375 1.68247 1.07780 1.33074 1.14146 1.60131 1.34777 1.32284 1.02723 1.21762 1.01526 0.93785 0.91280 1.19792 0.85098 0.88212 0.84467 1.90530 1.55368 1.16084 1.84748 1.41871 1.57635 1.12451 1.07966 1.19747 1.39888 0.96474 0.86766 0.87867 1.25270 0.97619 0.95785 0.99264 1.69621 1.48616 1.08869 1.27122 0.85803 0.78251 0.79633 0.80688 1.19201 1.20744 1.20705 0.91973 0.92475 0.91510 0.90800 0.90296 0.76455 0.87588 0.88539 0.88801 0.88440 0.83289 0.81430 0.78692 0.83197 0.93834 0.89368 0.77456 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.41 37.16 0.35 -1.10 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.28 5.31 -4.04 -0.02 1.26 16 5 N -0.73 -7.60 4.99 -60.30 -0.30 -7.90 16 6 C 0.52 5.76 7.83 -10.98 -0.09 5.67 16 7 O -0.54 -7.71 15.98 5.55 0.09 -7.62 16 8 C -0.13 -1.16 5.57 -27.89 -0.16 -1.32 16 9 C -0.06 -0.45 4.94 -27.89 -0.14 -0.59 16 10 C 0.18 1.55 6.21 -82.24 -0.51 1.04 16 11 C -0.22 -1.58 9.80 -39.32 -0.39 -1.97 16 12 C 0.15 1.09 11.30 -17.21 -0.19 0.89 16 13 N -0.53 -4.87 10.44 -14.58 -0.15 -5.02 16 14 C 0.30 2.61 12.29 -92.15 -1.13 1.48 16 15 N -0.52 -4.97 10.04 -10.80 -0.11 -5.08 16 16 N -0.66 -9.93 5.93 -107.98 -0.64 -10.57 16 17 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 18 C 0.44 10.01 7.82 -10.98 -0.09 9.92 16 19 O -0.58 -15.42 15.78 5.55 0.09 -15.33 16 20 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 21 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.77 7.37 -40.82 -0.30 3.47 16 35 H 0.11 0.86 7.98 -51.93 -0.41 0.45 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 38 H 0.10 0.85 8.10 -51.92 -0.42 0.43 16 39 H 0.15 0.69 8.01 -52.49 -0.42 0.27 16 40 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.35 5.30 6.41 -39.29 -0.25 5.05 16 43 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 44 H 0.09 1.36 7.44 -51.93 -0.39 0.98 16 45 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -34.44 393.50 -8.88 -43.32 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.61 Total: 15.09 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -2.82 Total: 8.81 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.53 Total: -65.95 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.18 Total: -22.95 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.44 -8.88 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714238909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.322 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds