Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.38613 * 120.44925 * 124.72207 * 10 9 8 12 12 C 1.38579 * 118.40011 * 179.80685 * 11 10 9 13 13 N 1.32343 * 119.10462 * 0.47031 * 12 11 10 14 14 C 1.31789 * 120.81876 * 359.74887 * 13 12 11 15 15 N 1.31802 * 121.75254 * 0.02562 * 14 13 12 16 16 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 17 17 C 1.46903 * 110.99854 * 275.00026 * 16 2 1 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 38 38 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 39 39 H 1.07999 * 120.80344 * 0.02567 * 11 10 9 40 40 H 1.08001 * 120.44986 * 180.21770 * 12 11 10 41 41 H 1.07994 * 119.12093 * 179.97438 * 14 13 12 42 42 H 1.00901 * 110.99482 * 151.05012 * 16 2 1 43 43 H 1.09001 * 109.47321 * 299.99877 * 17 16 2 44 44 H 1.08999 * 109.46905 * 60.00434 * 17 16 2 45 45 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 46 46 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.3004 -3.6252 -3.4103 12 6 9.6838 -3.6806 -3.3504 13 7 10.3666 -2.5585 -3.1886 14 6 9.7471 -1.3994 -3.0900 15 7 8.4335 -1.3080 -3.1471 16 7 2.0196 -0.6924 1.1996 17 6 2.0823 0.2229 2.3470 18 6 2.5883 -0.5212 3.5559 19 8 2.8685 -1.6982 3.4702 20 7 2.7283 0.1210 4.7325 21 6 3.1880 -0.5559 5.8324 22 1 3.4384 -1.6037 5.7560 23 6 3.3320 0.1060 7.0456 24 7 3.0279 1.3811 7.1385 25 14 3.9591 -0.8161 8.5442 26 1 4.2286 -2.2300 8.1784 27 1 5.2119 -0.1819 9.0274 28 1 2.9347 -0.7699 9.6183 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 5.7455 -3.2702 -3.4159 38 1 5.8992 -1.7110 -4.2607 39 1 7.7161 -4.5245 -3.5376 40 1 10.1977 -4.6271 -3.4305 41 1 10.3314 -0.5008 -2.9581 42 1 2.9173 -1.1204 1.0290 43 1 2.7588 1.0464 2.1183 44 1 1.0869 0.6165 2.5525 45 1 2.5038 1.0622 4.8011 46 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714238909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = -57.824186 kcal Electronic energy + Delta-G solvation = -27381.460944 eV Core-core repulsion = 23304.792517 eV Total energy + Delta-G solvation = -4076.668428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98990 -40.90863 -40.15636 -38.25574 -36.04454 -35.94098 -34.95120 -33.76142 -33.28154 -32.39601 -31.73781 -28.22839 -27.89855 -26.21162 -25.53937 -25.26295 -23.16315 -21.67291 -21.32797 -21.07446 -19.92382 -18.72536 -18.34874 -17.95429 -17.39613 -17.07108 -16.99380 -16.74708 -16.43860 -16.34955 -16.17741 -15.80876 -15.61068 -15.28624 -14.82023 -14.73748 -14.36417 -14.27401 -13.82716 -13.65910 -13.51251 -13.43963 -13.26919 -13.19128 -12.93118 -12.79344 -12.57224 -12.39767 -12.30987 -12.11777 -11.87310 -11.80702 -11.56098 -11.51428 -10.98311 -10.54048 -10.34498 -10.22751 -10.15142 -10.01396 -9.37444 -8.47104 -5.95443 -0.05369 0.07924 1.36281 1.42141 1.55742 1.58949 2.04901 2.11791 2.28715 2.80019 2.87202 3.04718 3.20628 3.30234 3.46935 3.50377 3.69652 3.76231 4.06586 4.09113 4.15297 4.19394 4.23471 4.26830 4.39712 4.45718 4.58634 4.60433 4.62993 4.64863 4.76087 4.84419 4.93668 4.94842 5.03962 5.05771 5.31087 5.41267 5.44668 5.46953 5.88095 6.03862 6.08934 6.35956 6.40712 6.59943 7.10974 7.12870 7.15145 7.56564 8.11694 8.70369 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008808 B = 0.002277 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.149015 B =12294.360992 C =14864.909592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.123 3.877 5 N -0.727 5.727 6 C 0.518 3.482 7 O -0.576 6.576 8 C -0.126 4.126 9 C -0.049 4.049 10 C 0.164 3.836 11 C -0.221 4.221 12 C 0.144 3.856 13 N -0.547 5.547 14 C 0.285 3.715 15 N -0.537 5.537 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.407 0.593 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.174 0.826 40 H 0.198 0.802 41 H 0.215 0.785 42 H 0.343 0.657 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 -1.689 -21.616 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.379 5.379 6 C 0.306 3.694 7 O -0.456 6.456 8 C -0.167 4.167 9 C -0.087 4.087 10 C 0.019 3.981 11 C -0.242 4.242 12 C -0.021 4.021 13 N -0.262 5.262 14 C -0.003 4.003 15 N -0.252 5.252 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.191 0.809 40 H 0.215 0.785 41 H 0.231 0.769 42 H 0.164 0.836 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.314 -2.073 -21.900 22.886 hybrid contribution 0.621 0.095 1.093 1.261 sum 6.935 -1.978 -20.806 22.020 Atomic orbital electron populations 1.21752 0.92706 1.02516 1.02605 1.21865 0.97536 0.96453 0.87347 0.91400 1.21541 0.79418 1.01269 0.97865 1.46070 1.08195 1.59601 1.24058 1.20931 0.90716 0.76346 0.81437 1.90687 1.71303 1.49181 1.34450 1.21527 0.90151 1.04653 1.00333 1.20279 0.86697 1.03299 0.98458 1.21895 0.97123 0.89269 0.89838 1.23124 0.97468 1.00381 1.03254 1.23819 0.91612 0.97947 0.88756 1.68476 1.42680 1.00287 1.14755 1.25431 0.87935 0.96550 0.90349 1.68240 1.08252 1.33742 1.14927 1.60127 1.34797 1.32893 1.03723 1.21617 1.02568 0.93683 0.88937 1.20897 0.83204 0.87980 0.85463 1.90500 1.56665 1.18204 1.85616 1.41935 1.58240 1.12615 1.08211 1.19672 1.41959 0.95907 0.88570 0.90403 1.26010 0.97292 0.96606 1.01327 1.69672 1.48677 1.09647 1.28066 0.84901 0.78175 0.78071 0.77388 1.19832 1.19582 1.19727 0.92343 0.90022 0.92753 0.89691 0.91944 0.75746 0.86998 0.87941 0.88306 0.89236 0.80857 0.78538 0.76905 0.83627 0.90975 0.87753 0.76931 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.41 71.98 0.68 -1.93 16 2 C 0.08 1.57 2.81 44.91 0.13 1.70 16 3 H 0.07 1.18 7.80 -2.39 -0.02 1.16 16 4 C 0.12 2.49 5.31 86.38 0.46 2.95 16 5 N -0.73 -14.31 4.99 -463.07 -2.31 -16.62 16 6 C 0.52 11.16 7.83 87.66 0.69 11.85 16 7 O -0.58 -16.17 15.98 -3.04 -0.05 -16.22 16 8 C -0.13 -2.09 5.57 29.85 0.17 -1.92 16 9 C -0.05 -0.78 4.94 29.85 0.15 -0.63 16 10 C 0.16 2.72 6.21 42.58 0.26 2.99 16 11 C -0.22 -2.81 9.80 22.44 0.22 -2.60 16 12 C 0.14 1.88 11.30 84.70 0.96 2.84 16 13 N -0.55 -9.65 10.44 -200.06 -2.09 -11.74 16 14 C 0.28 4.87 12.29 180.88 2.22 7.09 16 15 N -0.54 -10.06 10.04 -188.07 -1.89 -11.95 16 16 N -0.68 -19.42 5.93 -495.54 -2.94 -22.36 16 17 C 0.06 2.01 5.97 85.56 0.51 2.52 16 18 C 0.44 19.91 7.82 87.66 0.69 20.60 16 19 O -0.62 -33.51 15.78 -3.06 -0.05 -33.56 16 20 N -0.57 -28.47 5.29 -306.99 -1.62 -30.09 16 21 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 25 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H 0.06 1.16 7.45 -2.39 -0.02 1.14 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 7.10 7.37 -92.71 -0.68 6.42 16 35 H 0.11 1.73 7.98 -2.39 -0.02 1.71 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.09 1.56 8.10 -2.38 -0.02 1.54 16 39 H 0.17 1.23 8.01 -2.91 -0.02 1.21 16 40 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.34 10.19 6.41 -89.69 -0.58 9.61 16 43 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 44 H 0.10 2.98 7.44 -2.39 -0.02 2.97 16 45 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 46 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -74.72 393.50 -1.19 -75.91 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.96 Total: 43.11 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 8.40 Total: 27.60 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -10.56 Total: -141.21 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.10 Total: -49.77 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -74.72 -1.19 -75.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714238909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.085 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds