Wall clock time and date at job start Tue Mar 31 2020 18:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47030 * 2 1 4 4 N 1.28441 * 125.19365 * 85.18771 * 3 2 1 5 5 C 1.30868 * 110.92683 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86365 * 0.02562 * 5 4 3 7 7 C 1.36604 * 125.18749 * 265.45656 * 3 2 1 8 8 C 1.47167 * 126.88362 * 0.02562 * 7 3 2 9 9 O 1.21622 * 119.99863 * 5.94885 * 8 7 3 10 10 N 1.34775 * 119.99495 * 185.94594 * 8 7 3 11 11 C 1.47015 * 125.65488 * 354.98942 * 10 8 7 12 12 C 1.54328 * 107.27101 * 178.84922 * 11 10 8 13 13 C 1.55159 * 103.01719 * 338.13797 * 12 11 10 14 14 H 1.08998 * 111.00460 * 277.22851 * 13 12 11 15 15 N 1.46905 * 111.00230 * 153.38145 * 13 12 11 16 16 C 1.46900 * 110.99810 * 161.35214 * 15 13 12 17 17 C 1.50703 * 109.47305 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99727 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00183 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00064 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00186 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99961 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47164 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99873 * 24 22 20 27 27 H 1.48498 * 109.47415 * 330.00084 * 24 22 20 28 28 C 1.47433 * 125.64230 * 175.29486 * 10 8 7 29 29 H 1.09003 * 109.47472 * 64.99547 * 1 2 3 30 30 H 1.09005 * 109.47461 * 184.99919 * 1 2 3 31 31 H 1.09000 * 109.47338 * 304.99461 * 1 2 3 32 32 H 1.08998 * 109.46524 * 239.99438 * 2 1 3 33 33 H 1.09000 * 109.46791 * 119.99925 * 2 1 3 34 34 H 1.08003 * 126.06644 * 180.02562 * 5 4 3 35 35 H 1.08000 * 127.31967 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.88184 * 298.39528 * 11 10 8 37 37 H 1.09000 * 109.88684 * 59.55247 * 11 10 8 38 38 H 1.08998 * 110.85433 * 219.67168 * 12 11 10 39 39 H 1.09003 * 110.51752 * 96.44815 * 12 11 10 40 40 H 1.00895 * 111.00374 * 37.39635 * 15 13 12 41 41 H 1.09001 * 109.47300 * 299.99613 * 16 15 13 42 42 H 1.08991 * 109.47494 * 59.99799 * 16 15 13 43 43 H 0.97007 * 120.00218 * 359.97438 * 19 17 16 44 44 H 0.97002 * 120.00113 * 179.97438 * 23 22 20 45 45 H 1.08997 * 110.36495 * 322.92925 * 28 10 8 46 46 H 1.08999 * 110.36772 * 85.25639 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1820 2.1085 1.0459 5 6 2.6308 3.2950 0.7246 6 6 2.7701 3.3388 -0.6645 7 6 2.3641 2.0939 -1.1129 8 6 2.3171 1.6300 -2.5088 9 8 1.8386 0.5434 -2.7727 10 7 2.8044 2.4092 -3.4945 11 6 3.3126 3.7791 -3.3320 12 6 3.7885 4.2590 -4.7194 13 6 4.0369 2.9309 -5.4822 14 1 5.0194 2.5224 -5.2457 15 7 3.8821 3.1189 -6.9310 16 6 4.5282 2.0295 -7.6752 17 6 4.3494 2.2564 -9.1542 18 8 3.7430 3.2297 -9.5495 19 7 4.8633 1.3781 -10.0377 20 6 4.7011 1.5848 -11.3833 21 1 4.1612 2.4514 -11.7352 22 6 5.2314 0.6795 -12.2943 23 7 5.8888 -0.3747 -11.8660 24 14 5.0098 0.9609 -14.1276 25 1 6.1446 1.7666 -14.6454 26 1 4.9717 -0.3479 -14.8283 27 1 3.7370 1.6875 -14.3666 28 6 2.9103 2.0312 -4.9156 29 1 -0.3634 0.4344 -0.9313 30 1 -0.3634 -1.0238 0.0896 31 1 -0.3634 0.5894 0.8419 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8539 4.0980 1.4116 35 1 3.1168 4.1689 -1.2619 36 1 2.5174 4.4285 -2.9656 37 1 4.1492 3.7838 -2.6332 38 1 4.7106 4.8340 -4.6359 39 1 3.0103 4.8449 -5.2086 40 1 4.2411 4.0165 -7.2196 41 1 5.5917 2.0077 -7.4373 42 1 4.0739 1.0791 -7.3956 43 1 5.3486 0.5998 -9.7216 44 1 6.2587 -1.0070 -12.5019 45 1 3.1813 0.9796 -5.0092 46 1 1.9709 2.2292 -5.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714322549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:59 Heat of formation + Delta-G solvation = 25.196043 kcal Electronic energy + Delta-G solvation = -28236.397784 eV Core-core repulsion = 24163.329383 eV Total energy + Delta-G solvation = -4073.068401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86153 -40.14043 -38.44135 -37.70485 -35.16992 -34.56631 -33.82556 -31.73833 -31.23580 -30.72914 -30.07906 -28.62391 -26.50839 -24.90538 -24.17799 -23.57484 -22.14386 -21.87142 -20.59316 -19.73489 -19.25873 -17.95066 -17.64117 -16.95428 -16.66420 -16.28082 -15.82277 -15.52099 -15.20670 -14.96967 -14.80123 -14.45159 -14.33254 -14.09244 -13.79667 -13.67567 -13.43801 -13.35503 -12.98706 -12.90725 -12.76123 -12.43011 -12.26274 -11.82498 -11.71666 -11.60941 -11.48460 -11.26253 -11.08292 -11.00207 -10.91697 -10.40765 -10.30589 -10.23662 -9.54680 -9.53221 -9.35109 -8.94185 -8.53967 -8.20401 -7.98934 -6.43727 -3.84741 0.96265 1.98814 2.31453 2.73155 2.90260 3.16511 3.25576 3.31483 3.86847 3.93581 4.01421 4.19618 4.20723 4.36086 4.49456 4.63099 4.68321 4.75813 4.85688 4.92924 5.02584 5.03759 5.16723 5.20344 5.24849 5.27898 5.30581 5.39489 5.50249 5.54186 5.67266 5.70300 5.73316 5.79454 5.84758 5.93441 5.98515 6.17218 6.23516 6.42032 7.08565 7.10403 7.52076 7.53404 7.68276 7.82590 8.03669 8.58278 9.15485 9.51515 10.02407 10.73888 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.001927 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.126924 B =14530.113983 C =15287.026009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.254 5.254 4 N -0.278 5.278 5 C -0.006 4.006 6 C -0.200 4.200 7 C -0.032 4.032 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.601 5.601 11 C 0.096 3.904 12 C -0.135 4.135 13 C 0.073 3.927 14 H 0.061 0.939 15 N -0.656 5.656 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.118 3.882 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.186 0.814 35 H 0.170 0.830 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.357 0.643 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.079 0.921 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 5.227 25.499 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.182 4.182 6 C -0.229 4.229 7 C -0.161 4.161 8 C 0.391 3.609 9 O -0.416 6.416 10 N -0.335 5.335 11 C -0.027 4.027 12 C -0.173 4.173 13 C -0.038 4.038 14 H 0.079 0.921 15 N -0.289 5.289 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.004 4.004 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.203 0.797 35 H 0.187 0.813 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.178 0.822 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.090 3.983 25.901 26.695 hybrid contribution 1.466 0.317 -1.219 1.933 sum -3.624 4.300 24.682 25.314 Atomic orbital electron populations 1.22081 0.93317 1.03542 1.03212 1.22226 0.96413 0.76425 1.05855 1.45876 1.44142 1.12356 1.01849 1.73196 1.18796 1.05126 1.13913 1.23608 1.04197 0.95247 0.95141 1.22785 1.07059 0.97294 0.95769 1.21316 1.10675 0.94392 0.89667 1.16470 0.78238 0.83699 0.82447 1.90802 1.45787 1.21475 1.83507 1.47997 1.61687 1.15459 1.08342 1.22435 0.99073 0.82724 0.98496 1.22859 1.02975 0.97428 0.94027 1.22640 0.96876 0.95299 0.89014 0.92123 1.59935 1.62157 1.06092 1.00759 1.21757 0.96986 0.95664 0.93971 1.19748 0.85043 0.85811 0.86847 1.90527 1.45481 1.31004 1.79781 1.41865 1.48789 1.23068 1.06170 1.19702 1.33233 1.09315 0.80681 0.87877 1.25276 0.96593 0.95343 1.00760 1.69611 1.36365 1.12462 1.35778 0.85847 0.78943 0.77569 0.81873 1.20422 1.20915 1.19377 1.22348 1.00159 0.99671 0.78255 0.91493 0.90018 0.91844 0.86425 0.88491 0.79683 0.81290 0.90356 0.90428 0.89552 0.88917 0.82247 0.93590 0.89489 0.77435 0.91836 0.90215 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.11 0.99 6.59 -4.04 -0.03 0.96 16 3 N -0.25 -2.76 3.35 -57.14 -0.19 -2.95 16 4 N -0.28 -2.99 11.90 30.59 0.36 -2.62 16 5 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.20 -1.71 9.43 -38.98 -0.37 -2.08 16 7 C -0.03 -0.35 6.92 -82.05 -0.57 -0.92 16 8 C 0.60 7.51 7.81 -12.64 -0.10 7.42 16 9 O -0.54 -8.06 14.97 5.26 0.08 -7.98 16 10 N -0.60 -6.48 3.33 -171.88 -0.57 -7.05 16 11 C 0.10 0.71 5.01 -3.07 -0.02 0.69 16 12 C -0.13 -1.05 6.42 -24.89 -0.16 -1.21 16 13 C 0.07 0.79 3.32 -65.56 -0.22 0.57 16 14 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 15 N -0.66 -9.50 6.00 -105.72 -0.63 -10.13 16 16 C 0.05 0.81 6.04 -4.97 -0.03 0.78 16 17 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 18 O -0.58 -15.40 15.78 5.55 0.09 -15.32 16 19 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.12 1.42 6.54 -2.52 -0.02 1.40 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 1.17 6.19 -51.93 -0.32 0.85 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.19 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.17 0.98 4.67 -52.49 -0.24 0.73 16 36 H 0.08 0.48 7.15 -51.92 -0.37 0.11 16 37 H 0.08 0.46 6.75 -51.93 -0.35 0.11 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.36 5.20 8.23 -39.29 -0.32 4.87 16 41 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -33.93 381.52 -7.63 -41.56 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.50 Total: 12.10 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.66 Total: 8.48 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.37 Total: -60.47 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.93 -7.63 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714322549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.754 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds