Wall clock time and date at job start Tue Mar 31 2020 18:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47030 * 2 1 4 4 N 1.28441 * 125.19365 * 85.18771 * 3 2 1 5 5 C 1.30868 * 110.92683 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86365 * 0.02562 * 5 4 3 7 7 C 1.36604 * 125.18749 * 265.45656 * 3 2 1 8 8 C 1.47167 * 126.88362 * 0.02562 * 7 3 2 9 9 O 1.21622 * 119.99863 * 5.94885 * 8 7 3 10 10 N 1.34775 * 119.99495 * 185.94594 * 8 7 3 11 11 C 1.47015 * 125.65488 * 354.98942 * 10 8 7 12 12 C 1.54328 * 107.27101 * 178.84922 * 11 10 8 13 13 C 1.55159 * 103.01719 * 338.13797 * 12 11 10 14 14 H 1.08998 * 111.00460 * 277.22851 * 13 12 11 15 15 N 1.46905 * 111.00230 * 153.38145 * 13 12 11 16 16 C 1.46900 * 110.99810 * 161.35214 * 15 13 12 17 17 C 1.50703 * 109.47305 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99727 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00183 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00064 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00186 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99961 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47164 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99873 * 24 22 20 27 27 H 1.48498 * 109.47415 * 330.00084 * 24 22 20 28 28 C 1.47433 * 125.64230 * 175.29486 * 10 8 7 29 29 H 1.09003 * 109.47472 * 64.99547 * 1 2 3 30 30 H 1.09005 * 109.47461 * 184.99919 * 1 2 3 31 31 H 1.09000 * 109.47338 * 304.99461 * 1 2 3 32 32 H 1.08998 * 109.46524 * 239.99438 * 2 1 3 33 33 H 1.09000 * 109.46791 * 119.99925 * 2 1 3 34 34 H 1.08003 * 126.06644 * 180.02562 * 5 4 3 35 35 H 1.08000 * 127.31967 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.88184 * 298.39528 * 11 10 8 37 37 H 1.09000 * 109.88684 * 59.55247 * 11 10 8 38 38 H 1.08998 * 110.85433 * 219.67168 * 12 11 10 39 39 H 1.09003 * 110.51752 * 96.44815 * 12 11 10 40 40 H 1.00895 * 111.00374 * 37.39635 * 15 13 12 41 41 H 1.09001 * 109.47300 * 299.99613 * 16 15 13 42 42 H 1.08991 * 109.47494 * 59.99799 * 16 15 13 43 43 H 0.97007 * 120.00218 * 359.97438 * 19 17 16 44 44 H 0.97002 * 120.00113 * 179.97438 * 23 22 20 45 45 H 1.08997 * 110.36495 * 322.92925 * 28 10 8 46 46 H 1.08999 * 110.36772 * 85.25639 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1820 2.1085 1.0459 5 6 2.6308 3.2950 0.7246 6 6 2.7701 3.3388 -0.6645 7 6 2.3641 2.0939 -1.1129 8 6 2.3171 1.6300 -2.5088 9 8 1.8386 0.5434 -2.7727 10 7 2.8044 2.4092 -3.4945 11 6 3.3126 3.7791 -3.3320 12 6 3.7885 4.2590 -4.7194 13 6 4.0369 2.9309 -5.4822 14 1 5.0194 2.5224 -5.2457 15 7 3.8821 3.1189 -6.9310 16 6 4.5282 2.0295 -7.6752 17 6 4.3494 2.2564 -9.1542 18 8 3.7430 3.2297 -9.5495 19 7 4.8633 1.3781 -10.0377 20 6 4.7011 1.5848 -11.3833 21 1 4.1612 2.4514 -11.7352 22 6 5.2314 0.6795 -12.2943 23 7 5.8888 -0.3747 -11.8660 24 14 5.0098 0.9609 -14.1276 25 1 6.1446 1.7666 -14.6454 26 1 4.9717 -0.3479 -14.8283 27 1 3.7370 1.6875 -14.3666 28 6 2.9103 2.0312 -4.9156 29 1 -0.3634 0.4344 -0.9313 30 1 -0.3634 -1.0238 0.0896 31 1 -0.3634 0.5894 0.8419 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8539 4.0980 1.4116 35 1 3.1168 4.1689 -1.2619 36 1 2.5174 4.4285 -2.9656 37 1 4.1492 3.7838 -2.6332 38 1 4.7106 4.8340 -4.6359 39 1 3.0103 4.8449 -5.2086 40 1 4.2411 4.0165 -7.2196 41 1 5.5917 2.0077 -7.4373 42 1 4.0739 1.0791 -7.3956 43 1 5.3486 0.5998 -9.7216 44 1 6.2587 -1.0070 -12.5019 45 1 3.1813 0.9796 -5.0092 46 1 1.9709 2.2292 -5.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714322549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:58 Heat of formation + Delta-G solvation = -0.647207 kcal Electronic energy + Delta-G solvation = -28237.518431 eV Core-core repulsion = 24163.329383 eV Total energy + Delta-G solvation = -4074.189048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57415 -41.02519 -40.12072 -38.79367 -36.32371 -35.76176 -35.28834 -33.28308 -32.58028 -31.53316 -30.76045 -29.59150 -27.96083 -26.21552 -25.18916 -24.54521 -22.88772 -22.62056 -21.48109 -21.10295 -20.43454 -19.90157 -18.54035 -17.95087 -17.53105 -17.36652 -17.06374 -16.69421 -16.36514 -16.24754 -15.92962 -15.65564 -15.44943 -15.16377 -14.98988 -14.62944 -14.56928 -14.27696 -13.92980 -13.82555 -13.71878 -13.54733 -13.47831 -13.18367 -13.05601 -12.84669 -12.50542 -12.41252 -12.30442 -12.13078 -12.02598 -11.80672 -11.67037 -11.50226 -11.23355 -10.35023 -10.32436 -10.03462 -10.01700 -9.78182 -9.41608 -8.46684 -5.95425 0.17718 1.24690 1.38190 1.42167 1.54920 1.64804 1.94354 2.05155 2.06923 2.29291 2.89411 3.20297 3.21374 3.43711 3.54583 3.64974 3.69538 3.97109 4.06895 4.11959 4.19068 4.24728 4.26802 4.31116 4.34287 4.48647 4.50075 4.58679 4.64524 4.66600 4.74496 4.81431 4.85158 4.88815 5.00803 5.05828 5.13250 5.18618 5.41252 5.54984 5.73398 5.87842 6.08121 6.25753 6.41348 6.59538 6.83772 7.07956 7.12488 7.56262 8.10947 8.70664 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.001927 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.126924 B =14530.113983 C =15287.026009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.266 5.266 4 N -0.299 5.299 5 C -0.006 4.006 6 C -0.184 4.184 7 C -0.058 4.058 8 C 0.597 3.403 9 O -0.577 6.577 10 N -0.599 5.599 11 C 0.092 3.908 12 C -0.124 4.124 13 C 0.077 3.923 14 H 0.074 0.926 15 N -0.668 5.668 16 C 0.064 3.936 17 C 0.439 3.561 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.269 1.269 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.118 3.882 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.220 0.780 35 H 0.200 0.800 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.357 0.643 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.063 0.937 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 6.677 26.991 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.055 5.055 4 N -0.131 5.131 5 C -0.181 4.181 6 C -0.213 4.213 7 C -0.186 4.186 8 C 0.386 3.614 9 O -0.458 6.458 10 N -0.332 5.332 11 C -0.030 4.030 12 C -0.162 4.162 13 C -0.034 4.034 14 H 0.092 0.908 15 N -0.303 5.303 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.005 4.005 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.236 0.764 35 H 0.216 0.784 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.178 0.822 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.031 5.448 27.419 28.244 hybrid contribution 1.116 -0.084 -1.610 1.961 sum -2.915 5.365 25.809 26.521 Atomic orbital electron populations 1.22014 0.92853 1.04561 1.01846 1.22279 0.96799 0.76279 1.05901 1.46032 1.44723 1.12815 1.01900 1.73187 1.19555 1.06179 1.14201 1.24263 1.02822 0.95204 0.95827 1.23181 1.05257 0.96801 0.96032 1.21347 1.12536 0.95710 0.88963 1.16783 0.77838 0.83398 0.83366 1.90774 1.47607 1.23204 1.84178 1.48034 1.61100 1.16663 1.07353 1.22724 1.00473 0.80908 0.98862 1.22866 1.04223 0.95770 0.93349 1.22647 0.96744 0.97123 0.86841 0.90790 1.59844 1.62323 1.05347 1.02742 1.21585 0.98920 0.96855 0.89462 1.20834 0.82975 0.84351 0.89224 1.90494 1.46677 1.32403 1.81188 1.41952 1.49588 1.23778 1.05826 1.19671 1.34610 1.09482 0.82449 0.90176 1.26059 0.95857 0.94826 1.04709 1.69674 1.36477 1.12822 1.37216 0.84920 0.78758 0.77856 0.76769 1.19473 1.19737 1.19778 1.22206 0.99761 0.99238 0.79297 0.93768 0.88071 0.91823 0.87934 0.86776 0.76356 0.78365 0.88507 0.87962 0.86726 0.89408 0.82192 0.90970 0.88558 0.77022 0.91335 0.91827 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.24 71.98 0.74 -1.80 16 2 C 0.11 1.95 6.59 86.38 0.57 2.51 16 3 N -0.27 -5.63 3.35 -334.69 -1.12 -6.75 16 4 N -0.30 -5.95 11.90 -57.14 -0.68 -6.63 16 5 C -0.01 -0.08 12.03 85.18 1.02 0.94 16 6 C -0.18 -2.59 9.43 22.66 0.21 -2.38 16 7 C -0.06 -1.21 6.92 40.79 0.28 -0.93 16 8 C 0.60 14.84 7.81 86.59 0.68 15.52 16 9 O -0.58 -18.14 14.97 -4.10 -0.06 -18.20 16 10 N -0.60 -12.25 3.33 -815.95 -2.71 -14.96 16 11 C 0.09 1.05 5.01 86.73 0.43 1.49 16 12 C -0.12 -1.55 6.42 31.78 0.20 -1.34 16 13 C 0.08 1.53 3.32 46.31 0.15 1.68 16 14 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 15 N -0.67 -18.65 6.00 -488.40 -2.93 -21.59 16 16 C 0.06 2.08 6.04 85.56 0.52 2.60 16 17 C 0.44 20.32 7.82 87.66 0.69 21.00 16 18 O -0.62 -33.47 15.78 -3.07 -0.05 -33.51 16 19 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 24 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.12 2.82 6.54 86.85 0.57 3.38 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 2.18 6.19 -2.39 -0.01 2.16 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.20 1.38 4.67 -2.91 -0.01 1.37 16 36 H 0.10 0.81 7.15 -2.38 -0.02 0.80 16 37 H 0.10 0.74 6.75 -2.39 -0.02 0.72 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.36 9.96 8.23 -89.70 -0.74 9.23 16 41 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 42 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.40 19.17 7.90 -92.70 -0.73 18.44 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.25 381.52 0.04 -76.21 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.44 Total: 36.42 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 7.35 Total: 24.39 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -8.78 Total: -130.16 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.11 Total: -51.71 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.25 0.04 -76.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714322549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.561 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds