Wall clock time and date at job start Tue Mar 31 2020 18:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47371 * 2 1 4 4 C 1.34257 * 125.75557 * 125.26211 * 3 2 1 5 5 C 1.38046 * 107.41854 * 180.14616 * 4 3 2 6 6 C 1.47431 * 126.41556 * 179.87152 * 5 4 3 7 7 O 1.21600 * 119.99846 * 359.71765 * 6 5 4 8 8 N 1.34771 * 119.99762 * 179.71384 * 6 5 4 9 9 C 1.46505 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47242 * 180.02562 * 9 8 6 11 11 C 1.31002 * 120.00008 * 127.00552 * 10 9 8 12 12 C 1.50700 * 120.00038 * 7.56155 * 11 10 9 13 13 N 1.46896 * 109.47145 * 127.15402 * 12 11 10 14 14 C 1.46903 * 110.99769 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46851 * 180.02562 * 14 13 12 16 16 O 1.21293 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99843 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00096 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99606 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00382 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99751 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47450 * 90.00086 * 22 20 18 24 24 H 1.48506 * 109.47192 * 209.99999 * 22 20 18 25 25 H 1.48499 * 109.47186 * 329.99891 * 22 20 18 26 26 C 1.41289 * 107.17030 * 359.61276 * 5 4 3 27 27 N 1.30450 * 108.02289 * 0.23965 * 26 5 4 28 28 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47282 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46823 * 60.00068 * 1 2 3 31 31 H 1.09003 * 109.47143 * 239.99793 * 2 1 3 32 32 H 1.08995 * 109.47068 * 120.00015 * 2 1 3 33 33 H 1.08002 * 126.29132 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00451 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.47067 * 59.99892 * 9 8 6 36 36 H 1.09003 * 109.47203 * 300.00246 * 9 8 6 37 37 H 1.08004 * 119.99899 * 307.00664 * 10 9 8 38 38 H 1.08006 * 120.00163 * 187.56345 * 11 10 9 39 39 H 1.08995 * 109.46738 * 7.15121 * 12 11 10 40 40 H 1.09007 * 109.47084 * 247.15747 * 12 11 10 41 41 H 1.00899 * 110.99732 * 56.04697 * 13 12 11 42 42 H 1.08996 * 109.47311 * 299.99778 * 14 13 12 43 43 H 1.08999 * 109.47119 * 60.00632 * 14 13 12 44 44 H 0.97000 * 119.99995 * 0.02562 * 17 15 14 45 45 H 0.96994 * 120.00118 * 180.02562 * 21 20 18 46 46 H 1.08001 * 125.99078 * 180.20383 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8729 1.9111 0.8896 5 6 3.0708 3.2310 0.5369 6 6 3.9323 4.2034 1.2339 7 8 4.5499 3.8670 2.2259 8 7 4.0353 5.4651 0.7715 9 6 4.8918 6.4313 1.4638 10 6 4.8309 7.7577 0.7511 11 6 4.5382 8.8467 1.4179 12 6 4.4302 8.8042 2.9204 13 7 5.2887 9.8443 3.5026 14 6 5.2083 9.8330 4.9694 15 6 6.0995 10.9114 5.5296 16 8 6.7392 11.6193 4.7807 17 7 6.1867 11.0885 6.8629 18 6 6.9979 12.0692 7.3725 19 1 7.5668 12.7000 6.7057 20 6 7.0873 12.2521 8.7470 21 7 6.3947 11.4848 9.5584 22 14 8.1921 13.5888 9.4415 23 1 7.4196 14.8502 9.5741 24 1 8.6935 13.1728 10.7760 25 1 9.3414 13.8060 8.5265 26 6 2.2978 3.4738 -0.6205 27 7 1.6772 2.3691 -0.9305 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3209 1.3996 1.7288 34 1 3.5424 5.7336 -0.0196 35 1 5.9194 6.0679 1.4685 36 1 4.5453 6.5543 2.4899 37 1 5.0285 7.8105 -0.3094 38 1 4.3743 9.7751 0.8907 39 1 4.7496 7.8261 3.2800 40 1 3.3956 8.9797 3.2154 41 1 5.0543 10.7542 3.1349 42 1 4.1791 10.0160 5.2783 43 1 5.5329 8.8621 5.3436 44 1 5.6760 10.5216 7.4618 45 1 6.4568 11.6127 10.5179 46 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715798246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:12 Heat of formation + Delta-G solvation = 28.202041 kcal Electronic energy + Delta-G solvation = -26465.711044 eV Core-core repulsion = 22392.772994 eV Total energy + Delta-G solvation = -4072.938051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79581 -39.43149 -38.30237 -36.93377 -35.09344 -34.93256 -33.85482 -32.78595 -31.17684 -31.01435 -30.18752 -27.92985 -26.24199 -24.76837 -24.33553 -23.11108 -22.90871 -21.13528 -20.36371 -19.51340 -18.96082 -18.06649 -17.76231 -16.61836 -16.36970 -16.16952 -15.85688 -15.68405 -15.31117 -14.99041 -14.73611 -14.56185 -14.41639 -14.28787 -13.73763 -13.66275 -13.56918 -13.26450 -13.10970 -12.86835 -12.71018 -12.65800 -12.36538 -12.08491 -11.81502 -11.50398 -11.46017 -11.40397 -11.01288 -10.78014 -10.36578 -10.18845 -10.14980 -10.06561 -9.53724 -9.47680 -9.21475 -8.93946 -8.42332 -8.00398 -7.92194 -6.38378 -3.79182 1.15111 1.77428 1.79392 1.93193 3.20472 3.22093 3.24880 3.28972 3.35331 3.87302 3.94561 4.16580 4.28043 4.31244 4.39337 4.47241 4.55988 4.62441 4.76670 4.89461 4.90127 5.01792 5.15737 5.17883 5.22916 5.29108 5.30362 5.39596 5.49642 5.62424 5.68353 5.79491 5.84806 5.96321 6.02477 6.22318 6.29940 6.34737 6.41437 6.64786 7.07243 7.21671 7.36618 7.58421 7.67746 8.09715 8.10600 8.64819 9.21162 9.57858 10.09365 10.79396 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.001449 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.589185 B =19319.767786 C =20133.910318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.129 3.871 5 C -0.294 4.294 6 C 0.593 3.407 7 O -0.548 6.548 8 N -0.722 5.722 9 C 0.142 3.858 10 C -0.182 4.182 11 C -0.111 4.111 12 C 0.069 3.931 13 N -0.663 5.663 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.080 3.920 27 N -0.296 5.296 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.189 0.811 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.892 -22.853 -20.717 33.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.023 4.023 5 C -0.309 4.309 6 C 0.380 3.620 7 O -0.426 6.426 8 N -0.373 5.373 9 C 0.020 3.980 10 C -0.202 4.202 11 C -0.131 4.131 12 C -0.060 4.060 13 N -0.295 5.295 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.108 4.108 27 N -0.115 5.115 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.206 0.794 34 H 0.232 0.768 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.311 -23.721 -21.113 34.433 hybrid contribution -0.327 1.238 1.098 1.687 sum -13.638 -22.483 -20.015 33.047 Atomic orbital electron populations 1.22062 0.93280 1.03237 1.03831 1.21860 0.96539 0.76750 1.04400 1.48666 1.34077 1.10694 1.20566 1.23031 0.91332 0.93614 0.94310 1.20257 1.11721 0.95401 1.03496 1.17226 0.80321 0.81195 0.83226 1.90804 1.46889 1.78747 1.26205 1.45731 1.49017 1.10528 1.32024 1.20496 0.95279 0.86050 0.96185 1.22670 1.03459 0.93737 1.00317 1.22839 0.96283 0.98441 0.95500 1.21294 0.95176 0.97631 0.91857 1.60108 1.55684 1.08804 1.04925 1.21697 0.98145 1.00123 0.88332 1.19797 0.86912 0.87405 0.83227 1.90521 1.48667 1.49351 1.58209 1.41860 1.41152 1.32195 1.04825 1.19711 1.21426 1.10918 0.90861 0.87912 1.25258 0.98121 0.98627 0.95923 1.69612 1.41484 1.39147 1.04070 0.85856 0.80044 0.80250 0.78120 1.20457 1.20934 1.19393 1.24068 0.94181 0.97479 0.95025 1.77140 1.23833 0.97136 1.13417 0.90357 0.91860 0.90920 0.89213 0.88093 0.79449 0.76751 0.90602 0.89948 0.86415 0.86589 0.89576 0.94500 0.83155 0.93810 0.89456 0.77432 0.91892 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.09 37.16 0.37 -0.18 16 2 C 0.12 0.43 7.21 -4.04 -0.03 0.40 16 3 N -0.36 -2.52 3.65 -60.81 -0.22 -2.74 16 4 C 0.13 0.99 11.25 -16.56 -0.19 0.80 16 5 C -0.29 -2.63 6.13 -105.07 -0.64 -3.28 16 6 C 0.59 6.57 7.81 -12.52 -0.10 6.47 16 7 O -0.55 -8.24 16.90 5.28 0.09 -8.15 16 8 N -0.72 -6.33 5.54 -62.56 -0.35 -6.68 16 9 C 0.14 1.45 5.76 -5.19 -0.03 1.42 16 10 C -0.18 -1.64 9.63 -36.03 -0.35 -1.99 16 11 C -0.11 -1.15 9.77 -36.03 -0.35 -1.50 16 12 C 0.07 0.86 5.77 -4.98 -0.03 0.83 16 13 N -0.66 -10.93 6.12 -116.34 -0.71 -11.64 16 14 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 15 C 0.44 10.65 7.82 -10.98 -0.09 10.57 16 16 O -0.58 -16.13 15.78 5.55 0.09 -16.05 16 17 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 18 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 22 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.08 0.60 11.50 -16.98 -0.20 0.40 16 27 N -0.30 -2.52 12.33 30.86 0.38 -2.14 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.11 8.06 -51.93 -0.42 -0.31 16 33 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.40 2.30 7.42 -40.82 -0.30 1.99 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.95 5.29 -51.93 -0.27 0.68 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.09 1.09 5.30 -51.93 -0.28 0.82 16 40 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.35 5.81 8.42 -39.29 -0.33 5.48 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.19 0.76 7.50 -52.49 -0.39 0.36 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -36.73 398.28 -7.45 -44.18 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.48 Total: 13.01 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.89 Total: 6.69 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.23 Total: -61.97 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.73 -7.45 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715798246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.382 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds