Wall clock time and date at job start Tue Mar 31 2020 18:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47371 * 2 1 4 4 C 1.34257 * 125.75557 * 125.26211 * 3 2 1 5 5 C 1.38046 * 107.41854 * 180.14616 * 4 3 2 6 6 C 1.47431 * 126.41556 * 179.87152 * 5 4 3 7 7 O 1.21600 * 119.99846 * 359.71765 * 6 5 4 8 8 N 1.34771 * 119.99762 * 179.71384 * 6 5 4 9 9 C 1.46505 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47242 * 180.02562 * 9 8 6 11 11 C 1.31002 * 120.00008 * 127.00552 * 10 9 8 12 12 C 1.50700 * 120.00038 * 7.56155 * 11 10 9 13 13 N 1.46896 * 109.47145 * 127.15402 * 12 11 10 14 14 C 1.46903 * 110.99769 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46851 * 180.02562 * 14 13 12 16 16 O 1.21293 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99843 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00096 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99606 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00382 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99751 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47450 * 90.00086 * 22 20 18 24 24 H 1.48506 * 109.47192 * 209.99999 * 22 20 18 25 25 H 1.48499 * 109.47186 * 329.99891 * 22 20 18 26 26 C 1.41289 * 107.17030 * 359.61276 * 5 4 3 27 27 N 1.30450 * 108.02289 * 0.23965 * 26 5 4 28 28 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47282 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46823 * 60.00068 * 1 2 3 31 31 H 1.09003 * 109.47143 * 239.99793 * 2 1 3 32 32 H 1.08995 * 109.47068 * 120.00015 * 2 1 3 33 33 H 1.08002 * 126.29132 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00451 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.47067 * 59.99892 * 9 8 6 36 36 H 1.09003 * 109.47203 * 300.00246 * 9 8 6 37 37 H 1.08004 * 119.99899 * 307.00664 * 10 9 8 38 38 H 1.08006 * 120.00163 * 187.56345 * 11 10 9 39 39 H 1.08995 * 109.46738 * 7.15121 * 12 11 10 40 40 H 1.09007 * 109.47084 * 247.15747 * 12 11 10 41 41 H 1.00899 * 110.99732 * 56.04697 * 13 12 11 42 42 H 1.08996 * 109.47311 * 299.99778 * 14 13 12 43 43 H 1.08999 * 109.47119 * 60.00632 * 14 13 12 44 44 H 0.97000 * 119.99995 * 0.02562 * 17 15 14 45 45 H 0.96994 * 120.00118 * 180.02562 * 21 20 18 46 46 H 1.08001 * 125.99078 * 180.20383 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8729 1.9111 0.8896 5 6 3.0708 3.2310 0.5369 6 6 3.9323 4.2034 1.2339 7 8 4.5499 3.8670 2.2259 8 7 4.0353 5.4651 0.7715 9 6 4.8918 6.4313 1.4638 10 6 4.8309 7.7577 0.7511 11 6 4.5382 8.8467 1.4179 12 6 4.4302 8.8042 2.9204 13 7 5.2887 9.8443 3.5026 14 6 5.2083 9.8330 4.9694 15 6 6.0995 10.9114 5.5296 16 8 6.7392 11.6193 4.7807 17 7 6.1867 11.0885 6.8629 18 6 6.9979 12.0692 7.3725 19 1 7.5668 12.7000 6.7057 20 6 7.0873 12.2521 8.7470 21 7 6.3947 11.4848 9.5584 22 14 8.1921 13.5888 9.4415 23 1 7.4196 14.8502 9.5741 24 1 8.6935 13.1728 10.7760 25 1 9.3414 13.8060 8.5265 26 6 2.2978 3.4738 -0.6205 27 7 1.6772 2.3691 -0.9305 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3209 1.3996 1.7288 34 1 3.5424 5.7336 -0.0196 35 1 5.9194 6.0679 1.4685 36 1 4.5453 6.5543 2.4899 37 1 5.0285 7.8105 -0.3094 38 1 4.3743 9.7751 0.8907 39 1 4.7496 7.8261 3.2800 40 1 3.3956 8.9797 3.2154 41 1 5.0543 10.7542 3.1349 42 1 4.1791 10.0160 5.2783 43 1 5.5329 8.8621 5.3436 44 1 5.6760 10.5216 7.4618 45 1 6.4568 11.6127 10.5179 46 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715798246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:11 Heat of formation + Delta-G solvation = -0.876812 kcal Electronic energy + Delta-G solvation = -26466.971998 eV Core-core repulsion = 22392.772994 eV Total energy + Delta-G solvation = -4074.199004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36373 -40.29869 -40.12641 -38.00097 -36.23182 -35.73768 -35.43545 -33.80873 -33.23070 -31.56160 -30.75780 -29.21358 -27.37199 -26.30341 -24.77980 -24.45182 -23.59404 -21.64779 -21.18668 -21.08879 -20.06940 -19.75782 -18.70327 -17.81324 -17.29100 -16.99591 -16.80930 -16.68715 -16.43521 -16.35346 -15.94992 -15.56224 -15.44061 -15.27194 -15.13500 -14.82280 -14.43875 -14.29253 -14.04179 -13.77872 -13.51481 -13.49366 -13.29055 -13.17375 -12.98507 -12.94564 -12.71545 -12.46946 -12.41504 -12.11545 -11.93032 -11.63960 -11.50443 -11.00918 -10.59682 -10.38140 -10.34813 -10.02767 -10.00109 -9.61513 -9.25060 -8.46323 -5.95468 0.53640 1.06221 1.18066 1.38673 1.42114 1.42607 1.55624 2.04618 2.30014 2.47620 2.49460 3.02792 3.20794 3.47811 3.62226 3.76677 3.80365 4.01578 4.06813 4.10767 4.13509 4.26720 4.34177 4.35187 4.41774 4.46430 4.49996 4.55918 4.67342 4.75587 4.79590 4.85439 4.88423 5.02852 5.20840 5.40509 5.41184 5.47462 5.61451 5.83205 5.87718 5.90377 6.08964 6.41083 6.50442 6.59909 6.68041 7.12355 7.32823 7.55723 8.10800 8.71102 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.001449 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.589185 B =19319.767786 C =20133.910318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.129 3.871 5 C -0.317 4.317 6 C 0.591 3.409 7 O -0.596 6.596 8 N -0.707 5.707 9 C 0.142 3.858 10 C -0.161 4.161 11 C -0.126 4.126 12 C 0.071 3.929 13 N -0.678 5.678 14 C 0.063 3.937 15 C 0.437 3.563 16 O -0.622 6.622 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.087 3.913 27 N -0.321 5.321 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.203 0.797 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.347 0.653 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 -23.663 -21.584 35.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.024 4.024 5 C -0.332 4.332 6 C 0.380 3.620 7 O -0.478 6.478 8 N -0.359 5.359 9 C 0.019 3.981 10 C -0.180 4.180 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.311 5.311 14 C -0.069 4.069 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.101 4.101 27 N -0.141 5.141 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.220 0.780 34 H 0.252 0.748 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.166 0.834 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.223 -24.554 -22.023 35.919 hybrid contribution -0.103 1.379 1.308 1.904 sum -14.326 -23.175 -20.715 34.226 Atomic orbital electron populations 1.22020 0.93234 1.04242 1.02374 1.22235 0.96582 0.75325 1.06257 1.48974 1.33407 1.11504 1.19765 1.23348 0.90984 0.93565 0.94531 1.20214 1.12720 0.95662 1.04584 1.17551 0.79903 0.81862 0.82653 1.90772 1.49018 1.79656 1.28395 1.45570 1.48449 1.09671 1.32187 1.20398 0.94713 0.87017 0.96005 1.22767 1.01533 0.92381 1.01360 1.22821 0.97973 0.99533 0.94210 1.21323 0.95065 0.96006 0.93302 1.60101 1.57530 1.09625 1.03795 1.21547 0.97784 0.98048 0.89514 1.20844 0.86514 0.87738 0.82416 1.90485 1.50325 1.51110 1.58969 1.41934 1.41264 1.32101 1.05683 1.19696 1.23065 1.12342 0.91456 0.90238 1.26059 0.99061 1.00507 0.95604 1.69674 1.41955 1.39960 1.04542 0.84909 0.78052 0.77720 0.77532 1.19484 1.19558 1.19776 1.24503 0.92952 0.98283 0.94339 1.77108 1.24717 0.97840 1.14460 0.88134 0.92935 0.92637 0.88157 0.85484 0.78021 0.74785 0.91979 0.91385 0.83749 0.85299 0.89920 0.93301 0.83445 0.91388 0.88175 0.76983 0.91283 0.76598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.09 71.98 0.73 -0.15 16 2 C 0.11 0.59 7.21 86.38 0.62 1.21 16 3 N -0.36 -4.56 3.65 -346.31 -1.26 -5.82 16 4 C 0.13 1.87 11.25 84.28 0.95 2.82 16 5 C -0.32 -5.43 6.13 -20.15 -0.12 -5.55 16 6 C 0.59 12.92 7.81 86.67 0.68 13.60 16 7 O -0.60 -18.29 16.90 -4.03 -0.07 -18.36 16 8 N -0.71 -11.59 5.54 -470.11 -2.60 -14.19 16 9 C 0.14 2.78 5.76 85.63 0.49 3.27 16 10 C -0.16 -2.56 9.63 25.64 0.25 -2.31 16 11 C -0.13 -2.37 9.77 25.64 0.25 -2.12 16 12 C 0.07 1.68 5.77 85.56 0.49 2.17 16 13 N -0.68 -21.88 6.12 -521.99 -3.19 -25.07 16 14 C 0.06 2.26 6.17 85.56 0.53 2.79 16 15 C 0.44 21.41 7.82 87.66 0.69 22.09 16 16 O -0.62 -35.23 15.78 -3.07 -0.05 -35.28 16 17 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 18 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 22 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 C 0.09 1.16 11.50 85.65 0.99 2.15 16 27 N -0.32 -5.12 12.33 -56.27 -0.69 -5.82 16 28 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.13 -0.02 8.06 -2.39 -0.02 -0.04 16 33 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.42 3.90 7.42 -92.71 -0.69 3.21 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.56 5.29 -2.39 -0.01 1.54 16 37 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.08 2.03 5.30 -2.39 -0.01 2.02 16 40 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.35 11.39 8.42 -89.69 -0.76 10.63 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 45 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.22 1.24 7.50 -2.91 -0.02 1.22 16 Total: -1.00 -80.94 398.28 -0.51 -81.45 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -1.14 Total: 38.38 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.81 Total: 21.11 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -9.09 Total: -132.83 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.12 Total: -53.64 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -80.94 -0.51 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715798246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.573 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds